View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11665_low_15 (Length: 238)
Name: NF11665_low_15
Description: NF11665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11665_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9242350 - 9242572
Alignment:
| Q |
1 |
ttagagagtatattttctctaatttggtgaaaacttaggtaagtattacttgttacaacatcttccttaaatcaaatgaaaatatagtatacacaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9242350 |
ttagagagtatattttctctaatttggtgaaaacttaggtaagtattacttgttgcaacatcttccttaaatcaaatgaaaatatagtatccacaaaatg |
9242449 |
T |
|
| Q |
101 |
aaaaagaaatgaatgaacacatggatctatcataccaaaagtagcaaagcaaagttgaaggtatcgactataacgaacaccttgcttggattcgtgaaga |
200 |
Q |
| |
|
||||||||||||||||| || ||| | ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
9242450 |
aaaaagaaatgaatgaatacgtggttgcatcataccaaaagtaacaaagcagagttgaaggtatcgactataacgaacaccatccttggattcgtgaaga |
9242549 |
T |
|
| Q |
201 |
tggacgagcaaccataaggtata |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9242550 |
tggacgagcaaccataaggtata |
9242572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 220
Target Start/End: Original strand, 9256928 - 9257019
Alignment:
| Q |
132 |
ataccaaaagtagcaaagcaaagttgaaggtatcgactataacgaacaccttgcttg---gattcgtgaagatggacgagcaaccataaggt |
220 |
Q |
| |
|
||||| ||||| || |||||||| |||||||||||||| || |||| ||| | || | |||||||||||||||||||||||||||||||| |
|
|
| T |
9256928 |
ataccgaaagtggcgaagcaaagctgaaggtatcgactgtagcgaataccgttctcgacggattcgtgaagatggacgagcaaccataaggt |
9257019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University