View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11665_low_3 (Length: 401)

Name: NF11665_low_3
Description: NF11665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11665_low_3
NF11665_low_3
[»] chr4 (14 HSPs)
chr4 (16-382)||(26056474-26056852)
chr4 (205-382)||(26113325-26113502)
chr4 (16-122)||(26085711-26085817)
chr4 (39-150)||(26112067-26112178)
chr4 (250-317)||(26090294-26090363)
chr4 (250-317)||(26080475-26080544)
chr4 (150-193)||(26111765-26111808)
chr4 (156-193)||(26085428-26085465)
chr4 (156-193)||(26121292-26121329)
chr4 (117-154)||(26086292-26086329)
chr4 (150-193)||(26128719-26128762)
chr4 (150-192)||(26038287-26038329)
chr4 (150-192)||(26056192-26056234)
chr4 (150-192)||(26067854-26067896)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 26056474 - 26056852
Alignment:
Q  16 gagcacagatattcagtacttcgactttgatactgaatttgattgaactactagcctctcaaacat--tcttgatgggaatatgagaattcatctatacc 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  26056474 gagcacagatattcagtacttcgactttgaaactgaatttgattgaactactagcctctcaaacatattcttgatgggaatatgagaattcatctatacc 26056573  T
Q  114 tatatatagaaaaaggaatgtgtgattttggagtgatttttacctaatgacttctttgtttctcaatctattacctcaatgaaannnnnnnacttgagtc 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||       |||||||||    
T  26056574 tatatatagaaaaaggaatgtgtgattttggagtgattttttcctaatgacatctttgtttctcaatctattacctcaatgaaaaaatttcacttgagtc 26056673  T
Q  214 cattatacgataattgaacatgtgc-----atatctcaacgtg---acaccatt--aattgattgggcaaacaattttttaattattaaaagtatacatg 303  Q
    |||||||||||||  ||||||||||     |||  | ||| ||   | |  |||  | ||||||||||||||||||||||||||||||||||||||||||    
T  26056674 cattatacgataaaggaacatgtgcatacgataattgaacatgtgcataaaatttcacttgattgggcaaacaattttttaattattaaaagtatacatg 26056773  T
Q  304 gtgcaattatacatgaaggtctttaattttaatcatcatattttcaactgctatggagattcacagtgggggctttacg 382  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  26056774 gtgcaattatacttgaaggtctttaattttaatcaccatattttcaactgttatggagattcacagtgggggctttacg 26056852  T

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Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 205 - 382
Target Start/End: Original strand, 26113325 - 26113502
Alignment:
Q  205 acttgagtccattatacgataattgaacatgtgcatatctcaacgtgacaccattaattgattgggcaaacaattttttaattattaaaagtatacatgg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  26113325 acttgagtccattatacgataattgaacatgtgcatatctcaacgtgacaccattaattgattgggtaaacaattttttaattattaaaagtatgcatgg 26113424  T
Q  305 tgcaattatacatgaaggtctttaattttaatcatcatattttcaactgctatggagattcacagtgggggctttacg 382  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  26113425 tgcaattatacatgaaggtctttaattttaatcaccatattttcaactgttatggagattcacagtgggggctttacg 26113502  T

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Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 26085711 - 26085817
Alignment:
Q  16 gagcacagatattcagtacttcgactttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctataccta 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26085711 gagcgcagatattcagtacttcgactttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctataccta 26085810  T
Q  116 tatatag 122  Q
    |||||||    
T  26085811 tatatag 26085817  T

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Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 26112067 - 26112178
Alignment:
Q  39 actttgatactgaatttgattgaactactagcctctcaaacattcttgatgggaatatgagaattcatctatacctatatatagaaaaaggaatgtgtga 138  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  26112067 actttgaaactgaatttgattgaactactagcctctcaaatattcttgatgggaatatgagaatacatctatacctatatatagataaaggaatatgtga 26112166  T
Q  139 ttttggagtgat 150  Q
    ||||||| ||||    
T  26112167 ttttggattgat 26112178  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 26090294 - 26090363
Alignment:
Q  250 tgacaccattaattgattgggcaaacaattttttaattatt--aaaagtatacatggtgcaattatacat 317  Q
    |||||||||||||||||||| ||||||||||||||||||||  ||||||||||| | |||||||||||||    
T  26090294 tgacaccattaattgattggccaaacaattttttaattatttaaaaagtatacaagttgcaattatacat 26090363  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 26080475 - 26080544
Alignment:
Q  250 tgacaccattaattgattgggcaaacaattttttaattatt--aaaagtatacatggtgcaattatacat 317  Q
    |||||||||||||||||||| ||||||||||||||||||||  |||| |||||| | |||||||||||||    
T  26080475 tgacaccattaattgattggccaaacaattttttaattattaaaaaaatatacaagctgcaattatacat 26080544  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 26111808 - 26111765
Alignment:
Q  150 tttttacctaatgacttctttgtttctcaatctattacctcaat 193  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  26111808 ttttttcctaatgacttctttgtttctcaatctattacctcaat 26111765  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 26085465 - 26085428
Alignment:
Q  156 cctaatgacttctttgtttctcaatctattacctcaat 193  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26085465 cctaatgacttctttgtttctcaatctattacctcaat 26085428  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 26121329 - 26121292
Alignment:
Q  156 cctaatgacttctttgtttctcaatctattacctcaat 193  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26121329 cctaatgacttctttgtttctcaatctattacctcaat 26121292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 26086292 - 26086329
Alignment:
Q  117 atatagaaaaaggaatgtgtgattttggagtgattttt 154  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  26086292 atatagaaaaaggaatgtgcgattttggagtgattttt 26086329  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 26128762 - 26128719
Alignment:
Q  150 tttttacctaatgacttctttgtttctcaatctattacctcaat 193  Q
    ||||| |||||||||||||||| ||||||||| |||||||||||    
T  26128762 ttttttcctaatgacttctttgcttctcaatccattacctcaat 26128719  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 26038329 - 26038287
Alignment:
Q  150 tttttacctaatgacttctttgtttctcaatctattacctcaa 192  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||    
T  26038329 ttttttcctaatggcttctttgtttctcaatctattacatcaa 26038287  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 26056234 - 26056192
Alignment:
Q  150 tttttacctaatgacttctttgtttctcaatctattacctcaa 192  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||    
T  26056234 ttttttcctaaagacttctttgtttctcagtctattacctcaa 26056192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 26067896 - 26067854
Alignment:
Q  150 tttttacctaatgacttctttgtttctcaatctattacctcaa 192  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||    
T  26067896 ttttttcctaaagacttctttgtttctcagtctattacctcaa 26067854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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