View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11665_low_4 (Length: 394)
Name: NF11665_low_4
Description: NF11665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11665_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 378
Target Start/End: Original strand, 11694367 - 11694739
Alignment:
| Q |
7 |
cattttataattgttattattttaggaagttgtttacatatctataagtgctaaaaactatttaatgtacttaaggagtggatgaaactttataaattat |
106 |
Q |
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| T |
11694367 |
cattttatgattattattattttaggaagttgtttacatatctataagtgctaaaaactatttaatgtacttaaggagtgcatgaaactttataaattat |
11694466 |
T |
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| Q |
107 |
aaaatgctaaaacaatattctatttcttacatgtatacg-aaaaaatatggttaaaatagtcaaatttatctatggtttgattatcattcttttcatata |
205 |
Q |
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| T |
11694467 |
aaagtgctaaaatcatattctatttcttacatgtatacggaaaaaatatggttgaaatagtcaaatttatttatggtttgattatcattcttttcatata |
11694566 |
T |
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| Q |
206 |
tcttattgcaatgaatgttgatggtaagtcattttttctcattctcaaatttcgtgagttactttctgcataatgtttgatcccattttagtaacatcct |
305 |
Q |
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| T |
11694567 |
tcttattggaatgaatgttgatggtaagtcattttttctcattctcaaatttcgtgagttactttctgcataatgtttgatcccattttagtaacatcct |
11694666 |
T |
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| Q |
306 |
tttattatctcttatttttccttacagcggttacatattgtattcaaaattatgattgtccggatgatatgtg |
378 |
Q |
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| T |
11694667 |
tttattatctcttatttttccttacagcggttacatactgtactcaaaattatgattgtccggatgacatgtg |
11694739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 28551595 - 28551523
Alignment:
| Q |
66 |
atttaatgtacttaaggagtggatgaaactttataaattataaaatgctaaaacaatattctatttcttacatg |
139 |
Q |
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| T |
28551595 |
atttaatgtatataaggagtggacgag-ctttataaattataaagtgataaaaccatattctatttcatacatg |
28551523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 28555913 - 28555868
Alignment:
| Q |
94 |
ctttataaattataaaatgctaaaacaatattctatttcttacatg |
139 |
Q |
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| T |
28555913 |
ctttataaattataaattgataaaaccatattctatttcttacatg |
28555868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 28701830 - 28701743
Alignment:
| Q |
50 |
ataagtgctaaaaactatttaatgtacttaaggagtggatgaaactttataaattataaaatgctaaaacaatattctatttcttacat |
138 |
Q |
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| T |
28701830 |
ataagcgctaaaacctattcaatgtatgtaacaagaggatgaa-ctttataaattataaagtgataaaaatatattctatttcatacat |
28701743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 242
Target Start/End: Complemental strand, 27259774 - 27259743
Alignment:
| Q |
211 |
ttgcaatgaatgttgatggtaagtcatttttt |
242 |
Q |
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| T |
27259774 |
ttgcaatgaatgttgatggtaagtcatttttt |
27259743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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