View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11665_low_6 (Length: 322)
Name: NF11665_low_6
Description: NF11665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11665_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 21612675 - 21612981
Alignment:
| Q |
1 |
agagaatatcaaaaatcatttcgaaattgatatatttatcatttctcactttcactcgataatttcttttaacaagcaaaatgatttattgaaatagaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
21612675 |
agagaatatcaaaaatcatttcgaaattgatatatttatcatttctcattttcactcgataatttcttttaacaagcaaaatgaattattgaaatacatg |
21612774 |
T |
|
| Q |
101 |
gagtactctaacccatatataacaagaagagtacacatgaagtgaaaggcaaacaacatattacaatttaaaccgaaaaaacagtagcctacttctatcc |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
21612775 |
gattactctaacccatatataacaagaagagtacacatgaagtgaaaggcaaacaacatattacaattcaaatcgaaaaaacagtagcctacttctatcc |
21612874 |
T |
|
| Q |
201 |
ctccctcaatacaaactgaaccctcttttcctgnnnnnnntgcatcacgcagcacga-----acgcataaagatcatatgagattttagatttcttctct |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
21612875 |
ctccctcaatacaaactgaaccctcttttccttaaaaaaatgcatcacgcagcacgaatgttacacataaagctcatatgagattttagatttctgctct |
21612974 |
T |
|
| Q |
296 |
tctccct |
302 |
Q |
| |
|
|| |||| |
|
|
| T |
21612975 |
tcgccct |
21612981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University