View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11665_low_8 (Length: 270)
Name: NF11665_low_8
Description: NF11665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11665_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11694320 - 11694090
Alignment:
| Q |
1 |
caaaataaaaactccaatcataagaatttattcttattttaccaagttttcattattttataacctttcttgcctaaaacggaaaaattaaaattgtttt |
100 |
Q |
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| T |
11694320 |
caaaataaaaactccaatcataagaatttattcttattttaccaagtttttattattttataacctttcatgactaaaacggaaaaattaagattgtttt |
11694221 |
T |
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| Q |
101 |
aaggtttttctctgatagagttttgaactttatgcctagcgtaacacccttataaactctttgtatttttacat---tttgttatgtagaacttgaatta |
197 |
Q |
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| T |
11694220 |
aaggtttttctctgataatgttttgaactttatgtctagcgtaacacccttataaactctttgtatttttaaatgactttgttacgtagaacttgaatta |
11694121 |
T |
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| Q |
198 |
agtctggtacca-caagtggttttataaata |
227 |
Q |
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||||||||| || || |||||||||||||| |
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| T |
11694120 |
agtctggtatcataaaatggttttataaata |
11694090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 19333222 - 19333277
Alignment:
| Q |
14 |
ccaatcataagaatttattcttattttaccaagttttcattattttataacctttc |
69 |
Q |
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| T |
19333222 |
ccaatcataagaattcgttcttattttacaaagtttccattattctataacctttc |
19333277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 28556728 - 28556781
Alignment:
| Q |
14 |
ccaatcataagaatttattcttattttaccaagttttcattattttataaccttt |
68 |
Q |
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| T |
28556728 |
ccaatcataagaattcattcttacttt-ccaagttttcattattatatgaccttt |
28556781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 28712268 - 28712300
Alignment:
| Q |
14 |
ccaatcataagaatttattcttattttaccaag |
46 |
Q |
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| T |
28712268 |
ccaatcataagaattaattcttattttaccaag |
28712300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 20042114 - 20042058
Alignment:
| Q |
14 |
ccaatcataagaatttattcttattttaccaagttttcattattttataacctttct |
70 |
Q |
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|||||||| |||||| |||||||||||||||| || ||||||| ||||||||||| |
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|
| T |
20042114 |
ccaatcatcagaattcattcttattttaccaatcttctattatttgataacctttct |
20042058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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