View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11666_high_13 (Length: 283)
Name: NF11666_high_13
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11666_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 85 - 283
Target Start/End: Complemental strand, 33342147 - 33341949
Alignment:
| Q |
85 |
taccatgcaagagtgcagataagcttcccattggcatataatcatacacaacaagcttctcatctttactaaaataataacccctaagtgggaccaattt |
184 |
Q |
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| T |
33342147 |
taccatgcaagagtgcagataagcttcccattggcatataatcatacacaacaagcttctcatctttactaaaataataacccctaagtgggaccaattt |
33342048 |
T |
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| Q |
185 |
ctcatgaaccaatttcccaacctcctcaattttctccctgaattctctttcacttgctgtaacatccttcaacctctttacagccacactaattcccat |
283 |
Q |
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| T |
33342047 |
ctcatgaaccaatttcccaacctcctcaattttctccctgaattctctttcacttgctgtaacatccttcaatctctttacagccacactaattcccat |
33341949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 25390519 - 25390654
Alignment:
| Q |
86 |
accatgcaagagtgcagataagcttcccattggcatataatcatacacaacaagcttctcatctttactaaaataataacccctaagtgggaccaatttc |
185 |
Q |
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| T |
25390519 |
accatgcaaaagtgcagataaacttcccatatgcaaataatcatgaacaagaagcttctcatctctactataataataagccctaagaggtgccaaattc |
25390618 |
T |
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| Q |
186 |
tcatgaaccaatttcccaacctcctcaattttctcc |
221 |
Q |
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| T |
25390619 |
tcatgaaccattgttccaactttctcaatcttctcc |
25390654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 45443136 - 45443198
Alignment:
| Q |
86 |
accatgcaagagtgcagataagcttcccattggcatataatcatacacaacaagcttctcatc |
148 |
Q |
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| T |
45443136 |
accatgcaaaagtgcagagaggcttcccattgacatgtaatcataaacaaggagcttctcatc |
45443198 |
T |
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