View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11666_high_15 (Length: 258)
Name: NF11666_high_15
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11666_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 24144614 - 24144373
Alignment:
| Q |
6 |
cgggttttaaaacaccagttattatggaaccatttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttccttagtgaat |
105 |
Q |
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| T |
24144614 |
cgggttttaaaacactagttattatggaaccatttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttccttagttaat |
24144515 |
T |
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| Q |
106 |
gtcttcggtagtcttaaccgtgctgtgtatgtcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaaccctatcctgcaat |
205 |
Q |
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| T |
24144514 |
gtcttcggtagtcttaaccgtgctgtgtatgtcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaaccctatcctgcaat |
24144415 |
T |
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| Q |
206 |
catatgcttgttgtaagtcacattgagctctgactaattcat |
247 |
Q |
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| T |
24144414 |
catatgcttgttgtaagtcacattgagctctgactaattcat |
24144373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 223
Target Start/End: Complemental strand, 24126481 - 24126278
Alignment:
| Q |
24 |
ttattatggaaccatttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttccttagtgaatgtcttcggtagtcttaac |
123 |
Q |
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| T |
24126481 |
ttattgtgcaaccatttacctttctaatccaagctcatagatgacatctaaagctctttgttccttttgttccttagttaatgtctttggaagccttaac |
24126382 |
T |
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| Q |
124 |
cgtgctgtgtatgtcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaaccctatcctgca----atcatatgcttgttgt |
219 |
Q |
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| T |
24126381 |
cgagccgcgtacgttaatgtctctttcacagttaggtgaggaaacaaaacatcatcttgtgtcacaaatcctatcctgcaagtcatcatatgcttcttgt |
24126282 |
T |
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| Q |
220 |
aagt |
223 |
Q |
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|||| |
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| T |
24126281 |
aagt |
24126278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 43532976 - 43533141
Alignment:
| Q |
37 |
atttacctctccaagccaagctcatagatgacatctaatgctcttttttccttttgttccttagtgaatgtcttcggtagtcttaaccgtgctgtgtatg |
136 |
Q |
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| T |
43532976 |
atttacctctccaatcctagctcatagataacatctaaagctctttgttccttctgctctttggttaatgtttttggcaaccttaaacgagctgcatatg |
43533075 |
T |
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| Q |
137 |
tcaatgtctctttcacagttaggtgagtaaacaaaacatcatcttgtgtcacaaaccctatcctgc |
202 |
Q |
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| T |
43533076 |
tcaatgtttctttcacagttaggtgaggaaacagaacatcatcttgtgtcacaaatccaatcctgc |
43533141 |
T |
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