View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11666_high_4 (Length: 470)
Name: NF11666_high_4
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11666_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 5 - 460
Target Start/End: Complemental strand, 24144369 - 24143914
Alignment:
| Q |
5 |
aggtagaccggaacaaaatcaaggtaaagattttttagcgtctannnnnnnattcacaagactcaaacttgtgacattatatgagggaaaccaaacgatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24144369 |
aggtagaccggaacaaaatcaaggtaaagattttttagcgtctatttttttattcacaagactcaaacttgtgacattatatgagggaaaccaaacgatt |
24144270 |
T |
|
| Q |
105 |
catcacttgtattagacgacgttgtttagtgtgtttaattgaagtaccatatttcagtttcacttttgattgtgttatttcagaataacatggtatgtga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24144269 |
catcacttgtattagacgacgttgtttagcgtgtttaattgaagtaccatatttcagtttcacttttgattgtgttatttcagaataacatggtatgtga |
24144170 |
T |
|
| Q |
205 |
aaaatgtattcaaggaagtaaccctagctagccattggattttcacctgctcttaaggaacttggaatatattttgtcattgtaagtgatagaaccacca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24144169 |
aaaatgtattcaaggaagtaaccctagctagccattggattttcacctgctcttaaggaacttggaatatattttgtcattgtaagtgatagaaccacca |
24144070 |
T |
|
| Q |
305 |
tttgtgggatgatgatttagccttcctccaaggagttttaaaagagttgtctttccacttcctgatggacccatcattgccaaaacttcacctggattta |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24144069 |
tttgtgggatgatgatttagccttcctccaaggagttttaaaagagttgtctttccacttcctgatggacccatcattgccaaaacttcacctggattta |
24143970 |
T |
|
| Q |
405 |
cagaaccacttatgccattcaagatatctttcttctcacttgatgtcatgcctttg |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24143969 |
cagaaccacttatgccattcaagatatctttcttcccacttgatgtcatgcctttg |
24143914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 237 - 459
Target Start/End: Complemental strand, 24126127 - 24125908
Alignment:
| Q |
237 |
cattggattttcacctgctcttaaggaacttggaatatattttgtcattgtaagtgatagaaccaccatttgtgggatgatgatttagccttcctccaag |
336 |
Q |
| |
|
||||||||||| ||||||| || || |||||||||||| || ||||||||||||||||||||||||| ||||||| || ||| ||||||||||| |
|
|
| T |
24126127 |
cattggattttaacctgcttttgagaaacttggaatatgattggtcattgtaagtgatagaaccaccaattgtgggctggc---ttattcttcctccaag |
24126031 |
T |
|
| Q |
337 |
gagttttaaaagagttgtctttccacttcctgatggacccatcattgccaaaacttcacctggatttacagaaccacttatgccattcaagatatctttc |
436 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||||| ||| |
|
|
| T |
24126030 |
gagatttaaaagacttgtctttccacttcctgagggacccatcaatgccaaaacttcacctggatttacagaaccactgatcccatacaagatatccttc |
24125931 |
T |
|
| Q |
437 |
ttctcacttgatgtcatgccttt |
459 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
24125930 |
tcctcacttgatgtcatgccttt |
24125908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 435
Target Start/End: Original strand, 43533330 - 43533406
Alignment:
| Q |
359 |
ccacttcctgatggacccatcattgccaaaacttcacctggatttacagaaccacttatgccattcaagatatcttt |
435 |
Q |
| |
|
|||| |||||| |||||||||| ||| |||||||| |||||||||||| ||||| | || || |||||||||||||| |
|
|
| T |
43533330 |
ccacctcctgagggacccatcaatgctaaaacttcccctggatttacacaaccagtgatccctttcaagatatcttt |
43533406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University