View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11666_high_9 (Length: 374)

Name: NF11666_high_9
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11666_high_9
NF11666_high_9
[»] chr8 (9 HSPs)
chr8 (13-351)||(2028350-2028688)
chr8 (13-347)||(1950317-1950646)
chr8 (17-219)||(10767529-10767731)
chr8 (61-218)||(2046366-2046526)
chr8 (61-218)||(2036989-2037149)
chr8 (73-223)||(2050187-2050337)
chr8 (73-223)||(2054193-2054346)
chr8 (112-223)||(2032985-2033099)
chr8 (92-203)||(2057169-2057280)
[»] chr4 (1 HSPs)
chr4 (129-223)||(48908694-48908788)
[»] chr2 (4 HSPs)
chr2 (103-197)||(28786134-28786228)
chr2 (109-157)||(28713345-28713393)
chr2 (112-157)||(28736619-28736664)
chr2 (112-157)||(28743245-28743290)


Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 351
Target Start/End: Original strand, 2028350 - 2028688
Alignment:
Q  13 gagatgaaggatggtgtgaagaggtttcatgagatggaaacagatgctaaaaaggagttttatacaagagatatgcatggatcatttatttacaaaagca 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2028350 gagatgaaggatggtgtgaagaggtttcatgagatggagacagatgctaaaaaggagttttatacaagagatttgcatggatcatttatttacaaaagca 2028449  T
Q  113 attttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccacaagattttcctgttgtatg 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2028450 attttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccagaagattttcctgttgtatg 2028549  T
Q  213 caggtatgtttgtatgcatacatatacaatttatgtgctcaatgctccttgaactttagttattttcattggtacaaacgacactttagattaaagatgt 312  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2028550 caggtatgtttgtatgcatgcatatacaatttatgtgctcaatgctccttgaactttagttattttcattggtacaaacgacactttagattaaagatgt 2028649  T
Q  313 gttcaatattttttatattactttttaaaattattgttt 351  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2028650 gttcaatattttttatattactttttaaaattattgttt 2028688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 1950646 - 1950317
Alignment:
Q  13 gagatgaaggatggtgtgaagaggtttcatgagatggaaacagatgctaaaaaggagt---tttatacaagagatatgcatggatcatttatttacaaaa 109  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||| |||| |||||   ||  |||||||||||||||||    
T  1950646 gagatgaaggatggtgtgaagaggtttcatgagatggatacagatgctaaaaaggagtacttttacacaaaagatagaaataaatcatttatttacaaaa 1950547  T
Q  110 gcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccacaagattttcctgttgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1950546 gcaattttgatttgtatagctcaccagcactcaattggagggatacttgtgcttgttacttggctcctgatactcccaaaccacaagattttcctgttgt 1950447  T
Q  210 atgcaggtatgtttgtatgcatacatatacaatttatgtgctcaatgctccttgaactttagttattttcattggtacaaacgacactttagattaaaga 309  Q
    |||||||||||  | |||| |||  | || |||||||        ||||||||||| ||| |||||| |||  ||||| | |||||||||||||||||||    
T  1950446 atgcaggtatg--tatatgtatatgtgtaaaatttat-------ttgctccttgaaatttggttattatcaccggtacgaccgacactttagattaaaga 1950356  T
Q  310 tgtgttcaatattttttatattactt-tttaaaattatt 347  Q
     || ||||||||| ||| |||||||| ||| ||||||||    
T  1950355 cgtattcaatattatttttattacttgttttaaattatt 1950317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 10767529 - 10767731
Alignment:
Q  17 tgaaggatggtgtgaagaggtttcatgagatggaaacagatgctaaaaaggagttttatacaagagatatgcatggatcatttatttacaaaagcaattt 116  Q
    |||| |||||||| ||||||||| |||||  ||| ||||| |  ||||| || || |||||||||||||  |||  ||| ||||||||||| || || ||    
T  10767529 tgaaagatggtgttaagaggttttatgagcaggatacagaagtcaaaaaagatttgtatacaagagatagacataaatcctttatttacaatagtaactt 10767628  T
Q  117 tgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccacaagattttcctgttgtatgcagg 216  Q
    |||| | ||||||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  10767629 tgatatttatagctcaccagcacttaattggagggatacttttacatgttacttggctcctgatactcccaaaccagaagatattcctgtagtatgcagg 10767728  T
Q  217 tat 219  Q
    |||    
T  10767729 tat 10767731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 2046366 - 2046526
Alignment:
Q  61 aaaaaggagttttatacaagagatatgcatggatcatttatttacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgta 160  Q
    ||||| || |||||||||||||||||| || |||| ||||||||||| ||||||| |||| | |||||| ||||||||||||||||||| ||||||| |     
T  2046366 aaaaaagatttttatacaagagatatgaatagatcttttatttacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttg 2046465  T
Q  161 cttgttccttggct---cctgatactcccaaaccacaagattttcctgttgtatgcaggta 218  Q
    |||||| |||||||   |||||||||| ||||||| ||||  ||||||| |||||||||||    
T  2046466 cttgttacttggctccacctgatactctcaaaccagaagagattcctgtggtatgcaggta 2046526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 2036989 - 2037149
Alignment:
Q  61 aaaaaggagttttatacaagagatatgcatggatcatttatttacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgta 160  Q
    ||||| || |||||||||||||||||| || |||| ||||||||||| ||||||| |||| | |||||| ||||||||||||||||||| ||||||| |     
T  2036989 aaaaaagatttttatacaagagatatgaatagatcttttatttacaatagcaattatgatatttatagcccaccagcactcaattggagagatacttttg 2037088  T
Q  161 cttgttccttggct---cctgatactcccaaaccacaagattttcctgttgtatgcaggta 218  Q
    |||||| |||||||   ||||||||||  |||||| ||||  ||||||| |||||||||||    
T  2037089 cttgttacttggctccacctgatactcttaaaccagaagagattcctgtggtatgcaggta 2037149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 2050187 - 2050337
Alignment:
Q  73 tatacaagagatatgcatggatcatttatttacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttgg 172  Q
    ||||||||||||||| || |||| ||| |||| || || ||||||||| | |||||||| || ||||||||||||||||||| || | | |||| |||||    
T  2050187 tatacaagagatatgaatagatcctttgtttataatagtaattttgatatttatagctctccggcactcaattggagggatagttttgcgtgttacttgg 2050286  T
Q  173 ctcctgatactcccaaaccacaagattttcctgttgtatgcaggtatgttt 223  Q
    |||||||||||||||||||| |||||||||| |  || |||||||||||||    
T  2050287 ctcctgatactcccaaaccagaagattttcccgcagtgtgcaggtatgttt 2050337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 2054193 - 2054346
Alignment:
Q  73 tatacaagagatatgcatggatcatttatttacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttgg 172  Q
    |||||||||||||||||  |||| ||||||||||| |||||| ||||| | |||||||| |||||||||||||||| ||||| || |  ||||  |||||    
T  2054193 tatacaagagatatgcagagatcctttatttacaatagcaatgttgatatttatagctctccagcactcaattggaaggatagttttggttgtaacttgg 2054292  T
Q  173 ct---cctgatactcccaaaccacaagattttcctgttgtatgcaggtatgttt 223  Q
    ||   |||||||||| ||||||| |||| |||||||| ||||||||||||||||    
T  2054293 ctccacctgatactctcaaaccagaagagtttcctgtggtatgcaggtatgttt 2054346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 2032985 - 2033099
Alignment:
Q  112 aattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggct---cctgatactcccaaaccacaagattttcctgttg 208  Q
    ||||||||| | ||||||||||||||||||||||||||||||| || ||  |||| |||||||   |||||||||| |||||||||||| |||||||| |    
T  2032985 aattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactctcaaaccacaagagtttcctgtgg 2033084  T
Q  209 tatgcaggtatgttt 223  Q
    |||||||||||||||    
T  2033085 tatgcaggtatgttt 2033099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 2057169 - 2057280
Alignment:
Q  92 gatcatttatttacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaacc 191  Q
    |||| ||| ||||||| |||||| ||||| | |||||||| || ||||||||||||||||||| || || ||||| |||||||||||||||||| |||||    
T  2057169 gatcctttgtttacaatagcaatgttgatatttatagctctccggcactcaattggagggatagttttagttgttacttggctcctgatactccaaaacc 2057268  T
Q  192 acaagattttcc 203  Q
    | ||||||||||    
T  2057269 agaagattttcc 2057280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 48908788 - 48908694
Alignment:
Q  129 ctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccacaagattttcctgttgtatgcaggtatgttt 223  Q
    ||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||    
T  48908788 ctcaccagcgctcaattggagggatacttttatttgtttcttggctcctgatactcccaaaccagaagattttcctctagtatgcaggtatgttt 48908694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 28786228 - 28786134
Alignment:
Q  103 tacaaaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggctcctgatactcccaaaccacaaga 197  Q
    ||||| ||||||||| || | ||||| ||| |||||||||||||||||||||||| |   ||||||||||||||| || |||| |||||||||||    
T  28786228 tacaatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcctaatgctcctaaaccacaaga 28786134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 28713393 - 28713345
Alignment:
Q  109 agcaattttgatttgtatagctcaccagcactcaattggagggatactt 157  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  28713393 agcaattttgatttgtatagatcaccagcacttaattggagggatactt 28713345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 28736664 - 28736619
Alignment:
Q  112 aattttgatttgtatagctcaccagcactcaattggagggatactt 157  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  28736664 aattttgatttgtatagttcaccagcacttaattggagggatactt 28736619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 28743290 - 28743245
Alignment:
Q  112 aattttgatttgtatagctcaccagcactcaattggagggatactt 157  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||    
T  28743290 aattttgatttgtatagttcaccagcgcttaattggagggatactt 28743245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University