View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11666_low_11 (Length: 362)
Name: NF11666_low_11
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11666_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 327677 - 328013
Alignment:
| Q |
19 |
cagatccactctcatttctggcatcaaccgcatctttgattcacatgactgcctcttctctcgataccactttcctcccctgtgtgtg-------gcttt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
327677 |
cagatccactctcatttctggcatcaaccgcatctttgattcacatgactgcctcttctctcgataccactttcctcccctgtgtgtgaccacacgcttt |
327776 |
T |
|
| Q |
112 |
tggagattcctagcaatgaaacggcaaaatgaagtaatttacagaaagttggatagaaatatcaacatgtcaagttataataaggtgctggaatatgaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
327777 |
tggagattcctagcaatgaaacggcaaaatgaagtaatttacagaaagttggatagaaatatcaacatgtcaagttataataaggtgctggaatatgaaa |
327876 |
T |
|
| Q |
212 |
taataagcttgcgaatgaatcagtaaatactcaagttgcccctgaaactgttgaaccgtatcaacctagtcctccacattgtcaatatttcaaaatgata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
327877 |
taataagcttgcgaatgaatcagtaaatactcaagttgcccctgaaactgttgaaccgtatcaacctagtcctccacattgtcaatatttcaaaatgata |
327976 |
T |
|
| Q |
312 |
tctagagttgccaaataaaataaaccatcgttcttct |
348 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
327977 |
tctggagttgccaaataaaataaaccatcgttcttct |
328013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 620919 - 620588
Alignment:
| Q |
19 |
cagatccactctcatttctggcatcaaccgcatctttgattcacatgactgcctcttctctcgataccactttcctcccctgtgtgtg-------gcttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
620919 |
cagatccactctcatttctggcatcaaccgcagctttgattcgcatgactgcctcttctctcgataccactttcctcccctgtgtgtgaccacacgcttt |
620820 |
T |
|
| Q |
112 |
tggagattcctagcaatgaaacggcaaaatgaagtaatttacagaaagttggatagaaatatcaacatgtcaagttataataaggtgctggaatatgaaa |
211 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
620819 |
tggagatacctagcaatgaaacagcaaaatgaagtaatttacagaaagttggatagaaacgtcaacatgtcaagttataataaggtgctggaatatgaaa |
620720 |
T |
|
| Q |
212 |
taataagcttgcgaatgaatcagtaaatactcaagttgcccctgaaactgttgaaccgtatcaacctagtcctccacattgtcaatatttcaaaatgata |
311 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
620719 |
taataagcttgcgaatgaatgagtaaatactcaagttgcccctgaaactgttgaaccctatcaacctagtcctccacattgtcaatatttcaaaatgata |
620620 |
T |
|
| Q |
312 |
tctagagttgccaaataaaataaaccatcgtt |
343 |
Q |
| |
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||| ||||||||||||||| |||||||||||| |
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| T |
620619 |
tctggagttgccaaataaagtaaaccatcgtt |
620588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 528508 - 528434
Alignment:
| Q |
19 |
cagatccactctcatttctggcatcaaccgcatctttgattcacatgactgcctcttctctcgataccactttcc |
93 |
Q |
| |
|
|||||||||||||| |||| |||||||| || |||| |||| ||| || ||||| |||||||| |||||||||| |
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|
| T |
528508 |
cagatccactctcacttctagcatcaactgccgctttaattctcataaccgcctcctctctcgacaccactttcc |
528434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 36498305 - 36498260
Alignment:
| Q |
251 |
ccctgaaactgttgaaccgtatcaacctagtcctccacattgtcaa |
296 |
Q |
| |
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|||||| | ||||| |||||||||||||||||||||||||| |||| |
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|
| T |
36498305 |
ccctgacattgttggaccgtatcaacctagtcctccacattctcaa |
36498260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 33920744 - 33920703
Alignment:
| Q |
264 |
gaaccgtatcaacctagtcctccacattgtcaatatttcaaa |
305 |
Q |
| |
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| T |
33920744 |
gaaccgtatcaacctagtccttcacattatcaatatttcaaa |
33920703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 14558521 - 14558466
Alignment:
| Q |
254 |
tgaaactgttgaaccgtatcaacctagtcctccacattgtcaatatttcaaaatgat |
310 |
Q |
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||||| |||||| | ||||||||||||||||||| ||| | |||||||||||||||| |
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| T |
14558521 |
tgaaattgttgagctgtatcaacctagtcctccagattat-aatatttcaaaatgat |
14558466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 27969877 - 27969918
Alignment:
| Q |
270 |
tatcaacctagtcctccacattgtcaatattt-caaaatgat |
310 |
Q |
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| T |
27969877 |
tatcaacctagtcctccacattgtcaatatttacaaaatgat |
27969918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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