View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11666_low_12 (Length: 309)
Name: NF11666_low_12
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11666_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 34180409 - 34180634
Alignment:
| Q |
15 |
aacaaactcattctcaaaataatggacaaagatagcttatcagca-tatgtctttcttggacaagccatgtaagactaaagccatttcaatggagtatat |
113 |
Q |
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| T |
34180409 |
aacaaactcattctcaaaataatggacaaagatagcttatcagcaatatgtttttcttggacaagccatgtaagactaaagccatttcaatggagtatat |
34180508 |
T |
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| Q |
114 |
aatagtgaaatgtacgtcatgttaattaattataacgttactttgctcgatcaattggatacttactttcatgtaattgacggatatggattctctatat |
213 |
Q |
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| T |
34180509 |
aatagtgaaatgt----catgttaattaattataacgttactttgctcgatcaattggatacttactttcatgtaattgacggatatggattctctatat |
34180604 |
T |
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| Q |
214 |
tgaaatttctctcaatttctgtcaagtgga |
243 |
Q |
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| T |
34180605 |
tggaatttctctcaatttctgtcaggtgga |
34180634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 34176460 - 34176537
Alignment:
| Q |
15 |
aacaaactcattctcaaaataatggacaaagatagcttatcagcatatgtctttcttggacaagccatgtaagactaa |
92 |
Q |
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| T |
34176460 |
aacaaagtcattctcaaaataatggacaaagatagcttttctgctgatgatttcattggacaagccacgtaagactaa |
34176537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 47804220 - 47804147
Alignment:
| Q |
194 |
cggatatggattctctatattgaaatttctctcaatttctgtcaagtggaatcacaactatcaaatatgagaaa |
267 |
Q |
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| T |
47804220 |
cggatttggaatctctccattgaaaattctctcaatttttctcaagtggaatctcaaccatcaaatatgagaaa |
47804147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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