View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11666_low_2 (Length: 649)

Name: NF11666_low_2
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11666_low_2
NF11666_low_2
[»] chr2 (2 HSPs)
chr2 (236-639)||(7371566-7371967)
chr2 (17-228)||(7371251-7371462)
[»] chr5 (3 HSPs)
chr5 (501-559)||(7400326-7400384)
chr5 (145-228)||(16387893-16387976)
chr5 (343-385)||(15549537-15549579)
[»] chr7 (7 HSPs)
chr7 (501-555)||(5447730-5447784)
chr7 (25-93)||(31795784-31795852)
chr7 (501-555)||(5439715-5439769)
chr7 (345-393)||(25078295-25078343)
chr7 (145-228)||(31795635-31795718)
chr7 (501-555)||(5448725-5448779)
chr7 (497-551)||(25078404-25078458)
[»] chr6 (4 HSPs)
chr6 (501-555)||(14766269-14766323)
chr6 (511-555)||(20727663-20727707)
chr6 (501-555)||(21118289-21118343)
chr6 (512-552)||(14763716-14763756)
[»] chr3 (8 HSPs)
chr3 (501-555)||(40195736-40195790)
chr3 (503-555)||(3371618-3371670)
chr3 (501-555)||(17730928-17730983)
chr3 (501-555)||(19032159-19032214)
chr3 (512-555)||(43979433-43979476)
chr3 (497-555)||(10758340-10758398)
chr3 (505-555)||(38183030-38183080)
chr3 (512-553)||(1027013-1027054)
[»] chr1 (4 HSPs)
chr1 (342-392)||(17645635-17645686)
chr1 (501-555)||(6138399-6138453)
chr1 (501-555)||(3742511-3742565)
chr1 (519-555)||(17645487-17645523)
[»] chr8 (2 HSPs)
chr8 (145-228)||(2615262-2615345)
chr8 (501-551)||(7277919-7277969)
[»] chr4 (1 HSPs)
chr4 (519-555)||(31322837-31322873)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 236 - 639
Target Start/End: Original strand, 7371566 - 7371967
Alignment:
Q  236 aaggaagaaggaggtcaagagtacacacacatatacacaagctctagttcttagttacaagatataatggtcagaagtactttaagtttgtatttgacnn 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  7371566 aaggaagaaggaggtcaagagtacacacacatatacacaagctctagttcttagttacaagatataatggtcagaagtactttaagtttgtatttgactt 7371665  T
Q  336 nnnnnnctttctcttatactcttatgttagagtgttttgagatgtaattatgtatttgtttcgaagagtgcgggtgtatcggggggatatgagatgttta 435  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  7371666 ttttttctttctcttatactcttatgttagagtgttttgagatgtaattatgtatttgtttcaaagagtgcgggtgtatcgggg-gatatgagatgttta 7371764  T
Q  436 agagtagtcaaaaaatttataaaaatttctatataatgttattctcttgtagtcattagaagtcattagacaatgatcgtggttttttctccggttttag 535  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7371765 agagtagtcaaaaaattaataaaaatttccatataatgttattctcttgtagtcattagaagtcattagacaatgatcgtggttttttctccggttttag 7371864  T
Q  536 agtttccacgttatattcttatgtgtctactgagttcttttattttcttggtgttttttcccaacaacataagcttcctgattacaaatcttataggacc 635  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||    
T  7371865 agtttccacgttatatttttatgtgtctactgagttcttttattttcttggtg-tttttcccaacaacataagcttcctgattacaaatcttattgggcc 7371963  T
Q  636 tttg 639  Q
    ||||    
T  7371964 tttg 7371967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 7371251 - 7371462
Alignment:
Q  17 gtctcatcttccacatcagaaaagaagggtgatattgtgaaagcgttgcaaccataaattccgctatgatgtttgggctagaaataattgatggctaatg 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7371251 gtctcatcttccacatcagaaaagaagggtgataatgtgaaagcgttgcaaccataaattccgctatgatgtttgggctagaaataattgatggctaatg 7371350  T
Q  117 gaatttacaggttaaagatgtgtcgactcaatcgagattacacaaagtgttaattagtacgcgatcattgattgatattgatgcaaggtgtggtgtgaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7371351 gaatttacaggttaaagatgtgtcgactcaatcgagattacacaaagtgttaattagtacgcgatcattgattgatattgatgcaaggtgtggtgtgaga 7371450  T
Q  217 ttttgtcggtgg 228  Q
    ||||||||||||    
T  7371451 ttttgtcggtgg 7371462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 501 - 559
Target Start/End: Complemental strand, 7400384 - 7400326
Alignment:
Q  501 ttagacaatgatcgtggttttttctccggttttagagtttccacgttatattcttatgt 559  Q
    |||||||||| || ||||||||||||| |||||||||||||||| ||||||||||||||    
T  7400384 ttagacaatggtcatggttttttctcccgttttagagtttccacattatattcttatgt 7400326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 16387893 - 16387976
Alignment:
Q  145 caatcgagattacacaaagtgttaattagtacgcgatcattgattgatattgatgcaaggtgtggtgtgagattttgtcggtgg 228  Q
    ||||||||||||||||| ||||  |||| ||    | |||||||||| |||||||||| ||||| ||||||||||||| |||||    
T  16387893 caatcgagattacacaatgtgtagattaatagattaacattgattgacattgatgcaaagtgtgctgtgagattttgttggtgg 16387976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 15549579 - 15549537
Alignment:
Q  343 tttctcttatactcttatgttagagtgttttgagatgtaatta 385  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  15549579 tttctcttgtactcttgtgttaaagtgttttgagatgtaatta 15549537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 5447784 - 5447730
Alignment:
Q  501 ttagacaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||||| | || |||||||||||||||||||||||||||| ||||||||||    
T  5447784 ttagacaatggtagtagttttttctccggttttagagtttccacattatattctt 5447730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 31795852 - 31795784
Alignment:
Q  25 ttccacatcagaaaagaagggtgatattgtgaaagcgttgcaaccataaattccgctatgatgtttggg 93  Q
    |||||||||| |||||||||||| ||||||||||| ||||||| |||||  |||||| ||| |||||||    
T  31795852 ttccacatcaaaaaagaagggtggtattgtgaaagtgttgcaatcataagctccgctgtgaagtttggg 31795784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 5439769 - 5439715
Alignment:
Q  501 ttagacaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||| | || ||||||||||| ||||||| |||||||||||||||||||||    
T  5439769 ttagacaacggtcatggttttttctacggttttggagtttccacgttatattctt 5439715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 25078295 - 25078343
Alignment:
Q  345 tctcttatactcttatgttagagtgttttgagatgtaattatgtatttg 393  Q
    |||||||||||||| | |||||||||| ||||||||||||| |||||||    
T  25078295 tctcttatactcttgtcttagagtgttgtgagatgtaattaggtatttg 25078343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 31795718 - 31795635
Alignment:
Q  145 caatcgagattacacaaagtgttaattagtacgcgatcattgattgatattgatgcaaggtgtggtgtgagattttgtcggtgg 228  Q
    ||||| ||||||||||| ||||| |||||||| ||  ||||| |||| |||||| ||| ||||| ||||||||| | |||||||    
T  31795718 caatcaagattacacaaggtgttgattagtacacgcgcattggttgacattgatacaaagtgtgttgtgagattatatcggtgg 31795635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 5448779 - 5448725
Alignment:
Q  501 ttagacaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||| | || ||||||||||| ||||||| |||||||||| ||||||||||    
T  5448779 ttagacaacggtcatggttttttctacggttttggagtttccacattatattctt 5448725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 551
Target Start/End: Original strand, 25078404 - 25078458
Alignment:
Q  497 gtcattagacaatgatcgtggttttttctccggttttagagtttccacgttatat 551  Q
    ||||||||||||  ||||||||||||||||| | ||| |||||||||| ||||||    
T  25078404 gtcattagacaactatcgtggttttttctcctgctttggagtttccacattatat 25078458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 14766323 - 14766269
Alignment:
Q  501 ttagacaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||| | ||||||||||||||||| |||| |||||||||||||||||||||    
T  14766323 ttagacaacggtcgtggttttttctccgattttggagtttccacgttatattctt 14766269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 511 - 555
Target Start/End: Original strand, 20727663 - 20727707
Alignment:
Q  511 atcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||    
T  20727663 atcgtggttttttctctgattttagagtttccacattatattctt 20727707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 21118343 - 21118289
Alignment:
Q  501 ttagacaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||| | | |||||||||||| || |||| |||||||||||||||||||||    
T  21118343 ttagacaacggttgtggttttttcttcgattttggagtttccacgttatattctt 21118289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 552
Target Start/End: Complemental strand, 14763756 - 14763716
Alignment:
Q  512 tcgtggttttttctccggttttagagtttccacgttatatt 552  Q
    |||||||||||||| ||||||| ||||||||| ||||||||    
T  14763756 tcgtggttttttcttcggttttggagtttccatgttatatt 14763716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 555
Target Start/End: Original strand, 40195736 - 40195790
Alignment:
Q  501 ttagacaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||| ||||||||||||||||| |||||| || ||||||||||||||||||    
T  40195736 ttagacaacgatcgtggttttttctctggttttggaatttccacgttatattctt 40195790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 503 - 555
Target Start/End: Original strand, 3371618 - 3371670
Alignment:
Q  503 agacaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||| ||| |||||||||||||||||||| |||||||| ||||||||||||    
T  3371618 agacaacgatagtggttttttctccggttttggagtttcctcgttatattctt 3371670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 17730983 - 17730928
Alignment:
Q  501 ttagacaatgatcgtggttttttc-tccggttttagagtttccacgttatattctt 555  Q
    |||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||    
T  17730983 ttagacaacggtcgtggttttttcctccggttttggagtttccacgttatattctt 17730928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 19032214 - 19032159
Alignment:
Q  501 ttagacaatgatcgtggttttttc-tccggttttagagtttccacgttatattctt 555  Q
    |||||||| | ||||||||||||| ||||||||| |||||||||||||||||||||    
T  19032214 ttagacaacggtcgtggttttttcctccggttttggagtttccacgttatattctt 19032159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 512 - 555
Target Start/End: Original strand, 43979433 - 43979476
Alignment:
Q  512 tcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  43979433 tcgtggttttttctccagttttggagtttccacgttatattctt 43979476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 555
Target Start/End: Complemental strand, 10758398 - 10758340
Alignment:
Q  497 gtcattagacaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    ||||||||| |||||||||||||||||||||| ||||  ||||||| || |||||||||    
T  10758398 gtcattagataatgatcgtggttttttctccgattttctagtttccgcgctatattctt 10758340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 555
Target Start/End: Complemental strand, 38183080 - 38183030
Alignment:
Q  505 acaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||| |||| ||||| ||| ||||||| |||||||||||||||||||||    
T  38183080 acaatggtcgtagttttgtcttcggttttggagtttccacgttatattctt 38183030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 553
Target Start/End: Original strand, 1027013 - 1027054
Alignment:
Q  512 tcgtggttttttctccggttttagagtttccacgttatattc 553  Q
    ||||||||||||||| |||||| |||||| ||||||||||||    
T  1027013 tcgtggttttttctctggttttggagtttacacgttatattc 1027054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 17645686 - 17645635
Alignment:
Q  342 ctttctcttatactcttatgttagagtgttttgagatgtaa-ttatgtattt 392  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  17645686 ctttctcttatactcttacgttagagtgttgtgagatgtaagttatgtattt 17645635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 555
Target Start/End: Original strand, 6138399 - 6138453
Alignment:
Q  501 ttagacaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||| | |||||||||||||||  ||||| |||||||||||||||||||||    
T  6138399 ttagacaacggtcgtggttttttctctagttttggagtttccacgttatattctt 6138453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 555
Target Start/End: Complemental strand, 3742565 - 3742511
Alignment:
Q  501 ttagacaatgatcgtggttttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||| | ||||||||||||||| | |||| |||||| ||||||||||||||    
T  3742565 ttagacaacggtcgtggttttttctctgatttttgagttttcacgttatattctt 3742511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 555
Target Start/End: Complemental strand, 17645523 - 17645487
Alignment:
Q  519 tttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||||||||||||||||||| | ||||||||||    
T  17645523 tttttctccggttttagagtttccgcattatattctt 17645487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 2615345 - 2615262
Alignment:
Q  145 caatcgagattacacaaagtgttaattagtacgcgatcattgattgatattgatgcaaggtgtggtgtgagattttgtcggtgg 228  Q
    |||||| |||| ||||  ||||| |||||||| ||  |||||||||||||||||| |||||||| |||| | || |||||||||    
T  2615345 caatcgggatttcacagggtgttgattagtacacgggcattgattgatattgatgtaaggtgtgatgtgcggttatgtcggtgg 2615262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 551
Target Start/End: Complemental strand, 7277969 - 7277919
Alignment:
Q  501 ttagacaatgatcgtggttttttctccggttttagagtttccacgttatat 551  Q
    |||||||| | |||||||||||| ||| |||||| ||||||||||||||||    
T  7277969 ttagacaacggtcgtggttttttatccagttttaaagtttccacgttatat 7277919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 555
Target Start/End: Original strand, 31322837 - 31322873
Alignment:
Q  519 tttttctccggttttagagtttccacgttatattctt 555  Q
    |||||||||| |||| |||||||||||||||||||||    
T  31322837 tttttctccgattttggagtttccacgttatattctt 31322873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University