View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11666_low_3 (Length: 584)
Name: NF11666_low_3
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11666_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 12 - 571
Target Start/End: Complemental strand, 50765843 - 50765283
Alignment:
| Q |
12 |
cagaagagatttttaaaaggatgaagagggatggttgcaagctatctcttgaaagttatacaatgttgattaacttatacggcaaggtaagcttttaaca |
111 |
Q |
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| T |
50765843 |
cagaagagatttttaaaaggatgaagagggatggttgcaagctatctcttgaaagttatacaatgttgattaacttatacggcaaggtaagcttttaaca |
50765744 |
T |
|
| Q |
112 |
gnnnnnnnccacctaaaataagaccttgacaacttggaaggtaannnnnnngtgtatgtcctaaaatgctaggacccgttattagagagccaacatgata |
211 |
Q |
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| T |
50765743 |
gtttttttccgcctaaaataagaccttggcaacttggaaggtaatttttttatgtatgtcctaaaatactaggacccgttattagagagccaacatgata |
50765644 |
T |
|
| Q |
212 |
caggatgaattaattgacattaagaaaacctaagatcaaaatagtattgtttgatttaggtataactcatcattacaaaaccaacttgtaaagtgagaga |
311 |
Q |
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| T |
50765643 |
caggatgaattaattgacattaagaaaacctaagatcaaaatagtattgtttgatttaggtataactcatcattacaaaaccaacttgtaaagtgagaga |
50765544 |
T |
|
| Q |
312 |
tgtcattcattataaactattgtcggactttatctcttatcaacgtgaaacttgtgtttttcccaatacttgataatgatgttagtcggttggag-nnnn |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50765543 |
tgtcattcattataaactattgtcggactttatctcttatcaacgtgaaacttgtgtttttcccaatacttgataatgatgttagtcggttggagttttt |
50765444 |
T |
|
| Q |
411 |
nnnatttgtatatggtatatttgctcttgttttcatttaagttgtagtcgtaacaaaggtgatgtaagttggtctagtcggtaaagattcaactcaagtc |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50765443 |
tttatttgtatatggtatatttgctcttgttttcatttaagttgtagtcgtaacaaaggtgatgtaagttggtctagtcggtaaagattcaactcaagtc |
50765344 |
T |
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| Q |
511 |
ccactagacctaagtttgaatcctgctaccaatgtgatgactgcattgggggtttctctgc |
571 |
Q |
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| T |
50765343 |
ccactagacctaagtttgaatcctgctaccaatgtgatgactgcattgggggtttctctgc |
50765283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Complemental strand, 49057358 - 49057303
Alignment:
| Q |
274 |
taactcatcattacaaaaccaacttgtaaagtgagagatgtcattcattataaact |
329 |
Q |
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| T |
49057358 |
taactcatccttacaaaaccaacttgtaaggtgagaggtgtcagtttttataaact |
49057303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 21183610 - 21183665
Alignment:
| Q |
274 |
taactcatcattacaaaaccaacttgtaaagtgagagatgtcattcattataaact |
329 |
Q |
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| T |
21183610 |
taactcatcattacaaaaccgacttgtaaggtgagatgtgtcactctttataaact |
21183665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 50095058 - 50095086
Alignment:
| Q |
274 |
taactcatcattacaaaaccaacttgtaa |
302 |
Q |
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| T |
50095058 |
taactcatcattacaaaaccaacttgtaa |
50095086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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