View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11666_low_6 (Length: 468)

Name: NF11666_low_6
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11666_low_6
NF11666_low_6
[»] chr3 (29 HSPs)
chr3 (1-455)||(10748192-10748650)
chr3 (168-348)||(18654604-18654782)
chr3 (197-348)||(24560308-24560457)
chr3 (197-348)||(41110325-41110474)
chr3 (241-308)||(220446-220513)
chr3 (241-361)||(36568895-36569019)
chr3 (242-308)||(37102198-37102264)
chr3 (241-308)||(30200137-30200204)
chr3 (241-302)||(16275760-16275821)
chr3 (241-348)||(41039954-41040066)
chr3 (202-349)||(37807176-37807322)
chr3 (168-301)||(21773844-21773970)
chr3 (241-302)||(9312526-9312587)
chr3 (197-348)||(14898067-14898220)
chr3 (168-278)||(25655049-25655154)
chr3 (241-348)||(52474043-52474155)
chr3 (241-300)||(55327498-55327557)
chr3 (303-348)||(6803396-6803441)
chr3 (252-348)||(28581190-28581291)
chr3 (241-300)||(2387817-2387876)
chr3 (274-348)||(34641151-34641230)
chr3 (241-284)||(43005812-43005855)
chr3 (241-280)||(52185144-52185183)
chr3 (241-302)||(40463926-40463987)
chr3 (245-302)||(46556277-46556334)
chr3 (320-348)||(30200102-30200130)
chr3 (320-348)||(37102163-37102191)
chr3 (320-348)||(40858767-40858795)
chr3 (318-350)||(55428589-55428621)
[»] chr4 (28 HSPs)
chr4 (168-348)||(27735807-27735985)
chr4 (168-348)||(5730834-5731012)
chr4 (197-348)||(45741981-45742130)
chr4 (241-348)||(54935197-54935309)
chr4 (235-348)||(49735472-49735590)
chr4 (241-302)||(31348376-31348437)
chr4 (198-344)||(17938115-17938259)
chr4 (237-348)||(41174469-41174585)
chr4 (241-348)||(54320562-54320674)
chr4 (197-300)||(16400891-16400987)
chr4 (197-302)||(46007754-46007854)
chr4 (241-302)||(2247858-2247919)
chr4 (241-278)||(34110933-34110970)
chr4 (241-348)||(24565350-24565462)
chr4 (197-278)||(26167028-26167102)
chr4 (197-302)||(36151667-36151764)
chr4 (260-302)||(6938394-6938436)
chr4 (250-308)||(29798422-29798480)
chr4 (168-273)||(35248748-35248846)
chr4 (275-348)||(37711285-37711363)
chr4 (197-272)||(45132586-45132654)
chr4 (168-241)||(37711205-37711278)
chr4 (302-348)||(29798292-29798338)
chr4 (318-348)||(53260722-53260752)
chr4 (314-347)||(34110803-34110836)
chr4 (237-300)||(54001163-54001223)
chr4 (198-230)||(23332654-23332686)
chr4 (320-348)||(56135933-56135961)
[»] chr2 (22 HSPs)
chr2 (237-348)||(36046208-36046324)
chr2 (197-302)||(39732784-39732882)
chr2 (235-348)||(23748217-23748335)
chr2 (199-302)||(15224749-15224845)
chr2 (235-348)||(9631682-9631800)
chr2 (168-348)||(36347545-36347723)
chr2 (237-302)||(36566905-36566971)
chr2 (241-346)||(12541894-12541999)
chr2 (197-301)||(16565868-16565965)
chr2 (241-295)||(17379940-17379994)
chr2 (168-299)||(19566878-19567003)
chr2 (241-302)||(34209592-34209653)
chr2 (237-348)||(39821793-39821899)
chr2 (241-302)||(27926681-27926742)
chr2 (241-278)||(42316843-42316880)
chr2 (258-302)||(1583222-1583266)
chr2 (197-274)||(37739974-37740044)
chr2 (255-301)||(8426935-8426981)
chr2 (241-302)||(9427113-9427175)
chr2 (314-348)||(42813826-42813860)
chr2 (318-355)||(2380989-2381026)
chr2 (197-241)||(31795878-31795922)
[»] chr8 (38 HSPs)
chr8 (237-348)||(31738547-31738663)
chr8 (168-348)||(16653011-16653189)
chr8 (241-348)||(11785654-11785766)
chr8 (197-346)||(31543078-31543225)
chr8 (235-308)||(1281265-1281338)
chr8 (235-350)||(30479719-30479839)
chr8 (197-299)||(30664452-30664547)
chr8 (197-302)||(1026904-1027002)
chr8 (237-348)||(16024278-16024393)
chr8 (241-302)||(9718534-9718595)
chr8 (237-348)||(40633000-40633109)
chr8 (197-278)||(11575485-11575559)
chr8 (197-301)||(4247574-4247670)
chr8 (169-302)||(6315125-6315251)
chr8 (241-346)||(36308971-36309081)
chr8 (237-302)||(37923133-37923198)
chr8 (268-348)||(43732842-43732927)
chr8 (241-301)||(29358396-29358455)
chr8 (168-285)||(42650405-42650518)
chr8 (255-348)||(3726867-3726965)
chr8 (314-348)||(8815145-8815179)
chr8 (247-301)||(34634277-34634331)
chr8 (168-273)||(40990268-40990366)
chr8 (314-348)||(41103508-41103542)
chr8 (241-278)||(7503033-7503070)
chr8 (247-301)||(2248586-2248640)
chr8 (241-275)||(37032507-37032541)
chr8 (241-278)||(29691001-29691038)
chr8 (320-348)||(2412968-2412996)
chr8 (318-346)||(2481983-2482011)
chr8 (197-241)||(3726964-3727008)
chr8 (318-350)||(7394671-7394703)
chr8 (302-350)||(7979142-7979190)
chr8 (320-348)||(9718493-9718521)
chr8 (241-273)||(11033545-11033577)
chr8 (241-302)||(13405104-13405169)
chr8 (241-273)||(33922648-33922680)
chr8 (264-348)||(38198199-38198283)
[»] chr7 (33 HSPs)
chr7 (197-302)||(33655163-33655261)
chr7 (168-348)||(40196536-40196714)
chr7 (168-348)||(41496961-41497139)
chr7 (241-348)||(47390984-47391096)
chr7 (241-346)||(4833537-4833647)
chr7 (241-348)||(18231714-18231826)
chr7 (197-302)||(24970220-24970318)
chr7 (241-348)||(32872790-32872897)
chr7 (197-302)||(34235062-34235160)
chr7 (197-300)||(22163167-22163262)
chr7 (197-300)||(22221875-22221970)
chr7 (252-348)||(31553189-31553287)
chr7 (249-348)||(42306466-42306570)
chr7 (241-347)||(10315761-10315872)
chr7 (241-348)||(13770952-13771062)
chr7 (249-302)||(42087131-42087184)
chr7 (241-348)||(13425124-13425236)
chr7 (167-302)||(40572290-40572417)
chr7 (267-348)||(36267557-36267643)
chr7 (241-302)||(1051555-1051614)
chr7 (241-348)||(25887320-25887432)
chr7 (237-348)||(33519172-33519288)
chr7 (241-301)||(47229888-47229948)
chr7 (302-348)||(31571664-31571710)
chr7 (314-348)||(33655314-33655348)
chr7 (318-348)||(48881562-48881592)
chr7 (241-278)||(37417712-37417749)
chr7 (168-261)||(39855953-39856047)
chr7 (320-348)||(17853072-17853100)
chr7 (197-241)||(18063670-18063714)
chr7 (242-302)||(19835838-19835898)
chr7 (241-273)||(43230364-43230396)
chr7 (302-346)||(48015401-48015445)
[»] chr1 (28 HSPs)
chr1 (197-348)||(40094937-40095086)
chr1 (198-350)||(8529891-8530041)
chr1 (241-348)||(10392000-10392108)
chr1 (168-348)||(30010394-30010572)
chr1 (237-348)||(12234134-12234250)
chr1 (197-346)||(50744291-50744434)
chr1 (197-302)||(49946643-49946741)
chr1 (235-348)||(38509898-38510016)
chr1 (241-348)||(20576137-20576247)
chr1 (241-302)||(36285629-36285690)
chr1 (241-302)||(41498532-41498593)
chr1 (241-348)||(7444623-7444735)
chr1 (167-282)||(45585760-45585868)
chr1 (197-302)||(32951373-32951471)
chr1 (241-302)||(43552051-43552108)
chr1 (168-348)||(2858936-2859114)
chr1 (268-348)||(2470734-2470819)
chr1 (241-348)||(35349470-35349578)
chr1 (237-349)||(35512921-35513038)
chr1 (242-301)||(28770852-28770909)
chr1 (197-299)||(51597759-51597854)
chr1 (319-350)||(1344749-1344780)
chr1 (197-282)||(42230629-42230707)
chr1 (318-348)||(20607427-20607457)
chr1 (318-360)||(26941043-26941085)
chr1 (197-302)||(41676370-41676470)
chr1 (320-348)||(35512638-35512666)
chr1 (197-241)||(44211014-44211058)
[»] scaffold0067 (1 HSPs)
scaffold0067 (237-348)||(39190-39307)
[»] chr5 (35 HSPs)
chr5 (197-302)||(28279531-28279629)
chr5 (241-347)||(36363160-36363271)
chr5 (255-348)||(1657955-1658053)
chr5 (241-348)||(13634839-13634951)
chr5 (237-308)||(16501839-16501910)
chr5 (171-348)||(16938544-16938719)
chr5 (168-348)||(7544198-7544376)
chr5 (242-307)||(20146916-20146981)
chr5 (197-327)||(4373591-4373719)
chr5 (241-348)||(14245092-14245204)
chr5 (241-355)||(26415021-26415141)
chr5 (197-302)||(9856971-9857069)
chr5 (197-278)||(10072726-10072800)
chr5 (197-302)||(20513500-20513602)
chr5 (197-302)||(36392205-36392303)
chr5 (247-348)||(11419196-11419302)
chr5 (241-357)||(37607022-37607143)
chr5 (241-357)||(37779231-37779352)
chr5 (242-348)||(2183943-2184054)
chr5 (243-302)||(8502890-8502949)
chr5 (197-302)||(17024279-17024377)
chr5 (241-301)||(32727833-32727893)
chr5 (197-357)||(37551498-37551654)
chr5 (197-357)||(37654328-37654484)
chr5 (236-350)||(43530-43652)
chr5 (197-348)||(10476119-10476268)
chr5 (243-348)||(10650544-10650654)
chr5 (275-348)||(40305674-40305747)
chr5 (252-299)||(17780292-17780340)
chr5 (241-283)||(22023495-22023538)
chr5 (318-348)||(21581157-21581187)
chr5 (314-347)||(36392355-36392388)
chr5 (318-350)||(2550562-2550594)
chr5 (320-348)||(22023571-22023599)
chr5 (320-348)||(29002220-29002248)
[»] chr6 (26 HSPs)
chr6 (168-347)||(19278039-19278220)
chr6 (197-301)||(4097568-4097665)
chr6 (237-348)||(1390443-1390559)
chr6 (237-348)||(10818340-10818456)
chr6 (241-348)||(34176463-34176574)
chr6 (240-301)||(33041589-33041650)
chr6 (241-348)||(9719035-9719147)
chr6 (241-348)||(9721142-9721254)
chr6 (235-348)||(14515593-14515711)
chr6 (264-348)||(14548756-14548842)
chr6 (241-302)||(21606899-21606960)
chr6 (241-302)||(31849238-31849299)
chr6 (241-302)||(33236079-33236139)
chr6 (241-348)||(30487310-30487421)
chr6 (241-348)||(5585305-5585418)
chr6 (241-302)||(1300748-1300809)
chr6 (298-348)||(21607034-21607084)
chr6 (237-348)||(665845-665961)
chr6 (237-302)||(1395760-1395825)
chr6 (241-302)||(2900038-2900099)
chr6 (237-348)||(4097239-4097355)
chr6 (253-299)||(9298625-9298672)
chr6 (235-302)||(10348853-10348920)
chr6 (197-278)||(13583810-13583884)
chr6 (295-348)||(30850099-30850152)
chr6 (316-348)||(1390323-1390355)
[»] scaffold0171 (1 HSPs)
scaffold0171 (245-348)||(16082-16190)
[»] scaffold0262 (1 HSPs)
scaffold0262 (197-346)||(16302-16449)
[»] scaffold0026 (2 HSPs)
scaffold0026 (302-348)||(1176-1222)
scaffold0026 (202-302)||(1264-1361)
[»] scaffold0294 (1 HSPs)
scaffold0294 (241-348)||(15391-15502)
[»] scaffold0007 (1 HSPs)
scaffold0007 (263-348)||(242366-242456)
[»] scaffold0006 (1 HSPs)
scaffold0006 (197-241)||(81520-81564)


Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 10748650 - 10748192
Alignment:
Q  1 atcagtatttaaaacatgaccctaagttgatccggccatgagatggtctcatctcattattagtttatttatttgtataatatagtaaaataaaatatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10748650 atcagtatttaaaacatgaccctaagttgatccggccatgagatggtctcatctcattattagtttatttatttgtataatatagtaaaataaaatatag 10748551  T
Q  101 accttgttttatcaagg-tgtgtttagattgatggtttagagggaggggggtgttacnnnnnnnnnna---aaattacggagtatataacatgnnnnnnn 196  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||           
T  10748550 accttgttttatcaagggtgtgtttagattgatggtttagagggaggggggtgttacttttttttttttttaaattacggagtatataacatgtttttct 10748451  T
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10748450 aaaataaattaagtgtgataaaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 10748351  T
Q  297 aaaatgtaaactctcttctctcttcccctcctaaaccctccatccaaacacatcgtaaggatatttgtagggacctgagagggtatcatctcatctcatc 396  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10748350 aaaatgtaaactctcttctcccttcccctcctaaaccctccatccaaacacatcgtaaggatatttgtagggacctgagagggtatcatctcatctcatc 10748251  T
Q  397 agcatgnnnnnnnacaatgtttgcatatatgtagggacctgagctatacgcagaaagtg 455  Q
    ||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  10748250 agcatgtttttttacaatgtttgcatatatgtagggacctgagctatacgcagaaagtg 10748192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 168 - 348
Target Start/End: Complemental strand, 18654782 - 18654604
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| | || ||||||||||||||       |||||||||||||||||||||||||| ||     
T  18654782 aaattacggactatataacatgtttctctaaaataaattaagtgtaattgaagtattatatga-------tcatttatcatgttaatatgttaactcttc 18654690  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||| ||||||||  | ||||||||||||||||     ||||| |||   |||||| |||||||||||||||||||||||||||    
T  18654689 aaaaaatattttatagggtccgtaatttaaaaatgaaatctaaaccctcccatctctttccctcctaaaccctccatccaaacaca 18654604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 197 - 348
Target Start/End: Original strand, 24560308 - 24560457
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||| | |||| ||||||||||||||       || |||||||||||||||||||||||||||||||||||||| ||| || | ||||||||    
T  24560308 aaaataaattaaatgtgattgaagtattatatga-------tcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtcggtaattta 24560400  T
Q  297 aaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||     ||||||||||   ||  ||||||||||||||||||||||||||||||    
T  24560401 aaaatgaaaagtaaactctcccatccgttcccctcctaaaccctccatccaaacaca 24560457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 348
Target Start/End: Complemental strand, 41110474 - 41110325
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       |  |||||||||||||||||||||||||||| |||| |||| ||| || ||||||||||    
T  41110474 aaaataaattaagtgtgattgaagtattatatga-------ttgtttatcatgttaatatgttaactttttataaaatatttcatagtgtccgtaattta 41110382  T
Q  297 aaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||     |||||  ||| ||| |||||||||||||| ||||||||||||||||    
T  41110381 aaaatgaaaagtaaaccttctcctcccttcccctcctaaatcctccatccaaacaca 41110325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 220513 - 220446
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaact 308  Q
    ||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  220513 tttattatgttaatatgttaactttttaaaaaacatttcataatgtccgtaatttaaaaatgaaaact 220446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 361
Target Start/End: Complemental strand, 36569019 - 36568895
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg----taaactctcttctctcttcccctcctaaaccctc 336  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||  || ||||||||||||    |||||||||  |||  |||| |||||||||||||    
T  36569019 tttatcatgttaatatgttaactttttgaaaaacatttcatagtgttcgaaatttaaaaatgaaaataaactctcccctccattccactcctaaaccctc 36568920  T
Q  337 catccaaacacatcgtaaggatatt 361  Q
    |||||||||||| | ||||| ||||    
T  36568919 catccaaacacaccctaaggttatt 36568895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 37102264 - 37102198
Alignment:
Q  242 ttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaact 308  Q
    |||| |||||||||||||||||||||||||||||||| ||| || |||||||||||||||| |||||    
T  37102264 ttattatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaact 37102198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 30200204 - 30200137
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaact 308  Q
    ||||| |||||||||||| ||||||||||||||||||| ||| || |||||||||||||||| |||||    
T  30200204 tttattatgttaatatgtaaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaact 30200137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 16275821 - 16275760
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||||||||||| |||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  16275821 tttatcatgttaataagttaactttttataaaacatttcataatgtccgaaatttaaaaatg 16275760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 41040066 - 41039954
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||||||||||||||||||||||| |||| |||| ||| || | ||||||||||| ||     ||||  ||   |||||||||||||||||||| |    
T  41040066 tttatcatgttaatatgttaactttttataaaatatttcatagtgtctgtaatttaaaattgaaaattaaagcctacgctctcttcccctcctaaacctt 41039967  T
Q  336 ccatccaaacaca 348  Q
    |||||||||||||    
T  41039966 ccatccaaacaca 41039954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 349
Target Start/End: Original strand, 37807176 - 37807322
Alignment:
Q  202 aaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaa---- 297  Q
    ||||||||| |||| ||||||||||||||       || |||||||||||||||| ||||||||||||||||||||| ||| || ||  |||||||        
T  37807176 aaattaagtgtgattgaagtattatatga-------tcgtttatcatgttaatatattaactttttaaaaaacatttcatagtgtccaaaatttaaaaac 37807268  T
Q  298 -aaatgtaaactctcttctctctt-cccctcctaaaccctccatccaaacacat 349  Q
     ||| ||||||  | | ||||||| ||||||||||||||||||| |||||||||    
T  37807269 gaaaagtaaacattgtcctctcttccccctcctaaaccctccattcaaacacat 37807322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 301
Target Start/End: Original strand, 21773844 - 21773970
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| |||| |||||||||       |  |||||||||| ||||||||||||||||    
T  21773844 aaattacggactatataacatgtttttctaaaataaattaagtgtgattgaagaattatatga-------ttgtttatcatgtaaatatgttaacttttt 21773936  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaat 301  Q
    |||||||||||  || ||  ||||||||||||||    
T  21773937 aaaaaacatttcctagtgttcgtaatttaaaaat 21773970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 9312587 - 9312526
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||||||||||||||||||| |||| |||| ||| || | ||||||||||||||    
T  9312587 tttatcatgttaatatgttaactttttacaaaatatttcatagtgtctgtaatttaaaaatg 9312526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 348
Target Start/End: Original strand, 14898067 - 14898220
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaa----aacattttataatgcccgtaa 292  Q
    |||||||||||||| |||| ||||||||||||||       || |||||| ||||||||| ||||||||  ||||    |||||||| ||||| ||||||    
T  14898067 aaaataaattaagtgtgattgaagtattatatga-------tcgtttatcgtgttaatatattaactttaaaaaaaaaaaacattttgtaatgtccgtaa 14898159  T
Q  293 tttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||     |||| ||||| ||||||||| ||| ||||||||| || ||||||||    
T  14898160 tttaaaaatgaaagctaaattctctcctctcttcctctcttaaaccctcaattcaaacaca 14898220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 25655154 - 25655049
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| ||||||||||||      | |||||||||||| |||||||||||||| ||     
T  25655154 aaattacggactatataacatgtttttctaaaataaattaagtgtgattgaagtattatata-----tgatcatttatcatattaatatgttaactcttc 25655060  T
Q  268 aaaaaacattt 278  Q
    |||||||||||    
T  25655059 aaaaaacattt 25655049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 52474043 - 52474155
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||| ||||||||||||||||||| |||| |||| |||    |||||||||||||||     |||||| ||| |||| |||||||||||||||||     
T  52474043 tttatcatattaatatgttaactttttacaaaatatttcataggatccgtaatttaaaaataaaaagtaaaccctcctctcccttcccctcctaaaccca 52474142  T
Q  336 ccatccaaacaca 348  Q
     | ||||||||||    
T  52474143 tcctccaaacaca 52474155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 55327498 - 55327557
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaa 300  Q
    ||||| ||||||||| | |||||||||||||||||||| |||||| |||| |||||||||    
T  55327498 tttattatgttaatacgctaactttttaaaaaacatttcataatgtccgtgatttaaaaa 55327557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 348
Target Start/End: Original strand, 6803396 - 6803441
Alignment:
Q  303 taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||| |||||||||||||||||||| || |||||||||||    
T  6803396 taaactctctcctctcttcccctcctaaaccttcaatccaaacaca 6803441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 252 - 348
Target Start/End: Complemental strand, 28581291 - 28581190
Alignment:
Q  252 aatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaaca 346  Q
    |||||||||||||||||||||| |||| | |||  | ||||||||||||||     ||||| |||  ||| ||||| || ||||||||||||||||||||    
T  28581291 aatatgttaactttttaaaaaatatttcacaatatctgtaatttaaaaatgaaaactaaaccctcccctcccttcctcttctaaaccctccatccaaaca 28581192  T
Q  347 ca 348  Q
    ||    
T  28581191 ca 28581190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 2387876 - 2387817
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaa 300  Q
    |||||||||||| ||| ||||||| ||||||||||||  ||| || ||||||||||||||    
T  2387876 tttatcatgttattattttaacttattaaaaaacattccatagtgtccgtaatttaaaaa 2387817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 34641151 - 34641230
Alignment:
Q  274 cattttataatgcccgtaatttaaaaatgtaaact-----ctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||| |||||||||||||| | ||| |     |||  ||| |||||||||||||||||||||||||||||||    
T  34641151 cattttataatgtccgtaatttaaaaaagaaaagtaagccctcccctcccttcccctcctaaaccctccatccaaacaca 34641230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 43005855 - 43005812
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataat 284  Q
    |||||||| |||||||||||||||||||||||| |||| |||||    
T  43005855 tttatcatattaatatgttaactttttaaaaaatatttcataat 43005812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 52185144 - 52185183
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacatttta 280  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  52185144 tttatcatgttaatatgttaactttttataaaatatttta 52185183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 40463987 - 40463926
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||| | | ||||  |||||||||||| |||||| || ||||||||||||||||    
T  40463987 tttatcatgttattgttttaatattttaaaaaacaatttatagtgtccgtaatttaaaaatg 40463926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 46556277 - 46556334
Alignment:
Q  245 tcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||| |||||||||||||||| || | ||| || |||||||| |||||||    
T  46556277 tcatgttaatatcttaactttttaaaaaatatgtcatagtgtccgtaattgaaaaatg 46556334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 30200130 - 30200102
Alignment:
Q  320 tcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||    
T  30200130 tcccctcctaaaccctccatccaaacaca 30200102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 37102191 - 37102163
Alignment:
Q  320 tcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||    
T  37102191 tcccctcctaaaccctccatccaaacaca 37102163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 40858767 - 40858795
Alignment:
Q  320 tcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||    
T  40858767 tcccctcctaaaccctccatccaaacaca 40858795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 55428589 - 55428621
Alignment:
Q  318 cttcccctcctaaaccctccatccaaacacatc 350  Q
    ||||||||||||||||||| |||||||||||||    
T  55428589 cttcccctcctaaaccctcaatccaaacacatc 55428621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 168 - 348
Target Start/End: Original strand, 27735807 - 27735985
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| ||||||||||||||       |||||||||||||||||||| ||||| |||    
T  27735807 aaattacggactatataacatgtttttttaaaataaattaagtgtgattgaagtattatatga-------tcatttatcatgttaatatgctaactcttt 27735899  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||||||| || ||||||||||||||||     | ||| || | ||| |||||||||||||||||||||||||||||||    
T  27735900 aaaaaacattttatagtgtccgtaatttaaaaatgaaaaatgaaccctatcctcccttcccctcctaaaccctccatccaaacaca 27735985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 168 - 348
Target Start/End: Complemental strand, 5731012 - 5730834
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| | || ||||||||||||||       |||||||||||||||||||||||||| ||     
T  5731012 aaattacggactatataacatgtttctctaaaataaattaagtgtaattgaagtattatatga-------tcatttatcatgttaatatgttaactcttc 5730920  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||| ||||||||  | ||||||||||||||||     ||||| |||   |||||| |||||||||||||||||||||||||||    
T  5730919 aaaaaatattttatagggtccgtaatttaaaaatgaaatctaaaccctcccatctctttccctcctaaaccctccatccaaacaca 5730834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 197 - 348
Target Start/End: Original strand, 45741981 - 45742130
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||| | |||| ||||||||||||||       || |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||    
T  45741981 aaaataaattaaatgtgattgaagtattatatga-------tcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaattta 45742073  T
Q  297 aaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||     ||||||||||  ||| ||| ||| |||||||||| ||||||||||||    
T  45742074 aaaatgaaaagtaaactctcccctccctttcccgcctaaacccttcatccaaacaca 45742130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 54935197 - 54935309
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||| |||||||| ||||||||||||| |||||| ||| || ||||||||||||||||     ||||| |||  ||| ||||||||||||||||||    
T  54935197 tttatcatattaatatgataactttttaaaatacatttcatagtgtccgtaatttaaaaatgaaaaataaaccctcccctcccttcccctcctaaaccct 54935296  T
Q  336 ccatccaaacaca 348  Q
    |||||||||||||    
T  54935297 ccatccaaacaca 54935309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 348
Target Start/End: Complemental strand, 49735590 - 49735472
Alignment:
Q  235 ttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctccta 329  Q
    ||||| ||||||||||||||| ||||||||||||||| |||||| ||  || |||||||||||||||     || ||| |||  ||| ||||||||||||    
T  49735590 ttatcgtttatcatgttaataggttaactttttaaaagacatttcatgttgtccgtaatttaaaaatgaaaagtgaaccctcccctcccttcccctccta 49735491  T
Q  330 aaccctccatccaaacaca 348  Q
    ||||||| |||||||||||    
T  49735490 aaccctcaatccaaacaca 49735472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 31348437 - 31348376
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||||||    
T  31348437 tttatcatgttaatatgttagctttttaaaaaacatttcatagtgtccgtaatttaaaaatg 31348376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 344
Target Start/End: Complemental strand, 17938259 - 17938115
Alignment:
Q  198 aaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaa 297  Q
    ||||||||||||| |||| ||||||||||||||       || |||||||||||| ||| |||| |||||||||||||||  |||||| || ||||||||    
T  17938259 aaataaattaagtgtgattgaagtattatatga-------tcgtttatcatgttattattttaaatttttaaaaaacattccataatgtccataatttaa 17938167  T
Q  298 aaatgtaaact---ctcttctctc--ttcccctcctaaaccctccatccaaa 344  Q
    ||| | ||| |   |||||| |||  ||||||||||||||||||||||||||    
T  17938166 aaacgaaaattaaactcttccctccattcccctcctaaaccctccatccaaa 17938115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 41174469 - 41174585
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaa 331  Q
    ||||||||| ||||||||||| |||||||||||||| ||||| ||| || || ||| |||||||||     |||||  ||  ||| ||||||||||||||    
T  41174469 atcatttattatgttaatatgctaactttttaaaaaccatttcatagtgtccctaaattaaaaatgaaaactaaaccatcccctcccttcccctcctaaa 41174568  T
Q  332 ccctccatccaaacaca 348  Q
    |||||||||||||||||    
T  41174569 ccctccatccaaacaca 41174585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 54320562 - 54320674
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    ||||||||||||||||| |||||||||||||||| ||| ||| || |||||||||||||||       |||| |||  ||| ||||||||||||||||||    
T  54320562 tttatcatgttaatatgctaactttttaaaaaacgtttcatagtgtccgtaatttaaaaattaaaatcaaaccctcccctcccttcccctcctaaaccct 54320661  T
Q  336 ccatccaaacaca 348  Q
    | |||||||||||    
T  54320662 caatccaaacaca 54320674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 16400891 - 16400987
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||| |||||| ||||||||||||||       || ||||||||||||||||||||||||||||||||  |||| ||| || || |||||||    
T  16400891 aaaataaattaattatgattgaagtattatatga-------tcgtttatcatgttaatatgttaactttttaaaaactatttcatagtgtccctaattta 16400983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 46007854 - 46007754
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaa-aaaacatttt-ataatgcccgtaatt 294  Q
    ||||||||||||||  ||| ||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||| || ||| | ||||||    
T  46007854 aaaataaattaagtgagattgaagtattatatga-------tcatttatcatgttaatatgttaactttttaaaaaaacattttcattatgtcggtaatt 46007762  T
Q  295 taaaaatg 302  Q
    ||||||||    
T  46007761 taaaaatg 46007754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 2247919 - 2247858
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||| |||||| |||||  |||||| ||||||||||||||| ||||||||||||||||    
T  2247919 tttatcatattaataagttaagattttaataaacattttataatgtccgtaatttaaaaatg 2247858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 34110933 - 34110970
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattt 278  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34110933 tttatcatgttaatatgttaactttttaaaaaacattt 34110970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 24565462 - 24565350
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    ||||||| ||||||| |||||||||||||||| |||||  ||||  |||||||||||||||     |||||| |||  |  ||||||| ||||||||| |    
T  24565462 tttatcacgttaataagttaactttttaaaaagcatttcgtaatatccgtaatttaaaaatgaaaagtaaaccctccccagtcttcccttcctaaacctt 24565363  T
Q  336 ccatccaaacaca 348  Q
    |||||||||||||    
T  24565362 ccatccaaacaca 24565350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 26167028 - 26167102
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattt 278  Q
    |||||||||||||| |||| ||||||||||||||       || ||||||||||||||||||||||| || |||||||||||    
T  26167028 aaaataaattaagtgtgattgaagtattatatga-------tcgtttatcatgttaatatgttaactcttaaaaaaacattt 26167102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 36151667 - 36151764
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       || |||||||||||||||||||||| ||||||||| |||||| || ||  | |||||||    
T  36151667 aaaataaattaagtgtgattgaagtattatatga-------tcgtttatcatgttaatatgttaac-ttttaaaaatcattttctagtgttcataattta 36151758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 6938394 - 6938436
Alignment:
Q  260 aactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  6938394 aactttttaaaaaacattttataatatccgtaatttaaaaatg 6938436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 29798422 - 29798480
Alignment:
Q  250 ttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaact 308  Q
    |||| ||||||| |||||||||||||||| ||| || |||||||||||||||| |||||    
T  29798422 ttaacatgttaattttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaact 29798480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 35248748 - 35248846
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| |||||||||||||       || |||||||||||||||| ||||||||||     
T  35248748 aaattacggactatataacatgtttttctaaaataaattaagtgtgattgaagtattatatg-------attatttatcatgttaatacgttaactttta 35248840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 37711285 - 37711363
Alignment:
Q  275 attttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||| || ||||||||||||||||     ||||| |||  ||| |||||||||||||||||||||||||||||||    
T  37711285 attttatagtgtccgtaatttaaaaatgaaatctaaaccctcccctcccttcccctcctaaaccctccatccaaacaca 37711363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 45132654 - 45132586
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaa 272  Q
    |||||||||||||| |||| |||||||||||||       ||| |||||||| |||||||||||||||||||||||    
T  45132654 aaaataaattaagtgtgattgaagtattatatg-------atcgtttatcattttaatatgttaactttttaaaaa 45132586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 37711205 - 37711278
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcat 241  Q
    |||||||||| |||||||||||       |||||||||||||| |||| |||||||||||||| | ||||||||    
T  37711205 aaattacggactatataacatgtttctctaaaataaattaagtgtgattgaagtattatatgatcatttatcat 37711278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 29798338 - 29798292
Alignment:
Q  302 gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||| || ||||||||||||||||||||| || |||||||||||    
T  29798338 gtaaactatcctctctcttcccctcctaaaccatcaatccaaacaca 29798292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 53260752 - 53260722
Alignment:
Q  318 cttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||||    
T  53260752 cttcccctcctaaaccctccatccaaacaca 53260722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 34110836 - 34110803
Alignment:
Q  314 ctctcttcccctcctaaaccctccatccaaacac 347  Q
    ||||||||||||||||||||||| ||||||||||    
T  34110836 ctctcttcccctcctaaaccctcaatccaaacac 34110803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 54001223 - 54001163
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaa 300  Q
    ||||||||||||||||||   | || ||||||||||  ||||||||||| ||||||||||||||    
T  54001223 atcatttatcatgttaat---tcaattttttaaaaattattttataatgtccgtaatttaaaaa 54001163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 23332686 - 23332654
Alignment:
Q  198 aaataaattaagtatgatagaagtattatatga 230  Q
    ||||||||||||| |||||||||||||||||||    
T  23332686 aaataaattaagtgtgatagaagtattatatga 23332654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 56135933 - 56135961
Alignment:
Q  320 tcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||    
T  56135933 tcccctcctaaaccctccatccaaacaca 56135961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 36046324 - 36046208
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaa 331  Q
    |||||||| |||||||||||||||||||||||||||||||||| || || ||||||||||||||||     |||||||||  |||  |||||||||||||    
T  36046324 atcatttaacatgttaatatgttaactttttaaaaaacattttctagtgtccgtaatttaaaaatgaaaaataaactctcccctcatttcccctcctaaa 36046225  T
Q  332 ccctccatccaaacaca 348  Q
    |||||||||||||||||    
T  36046224 ccctccatccaaacaca 36046208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 39732882 - 39732784
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    ||||||||||||||||||| ||||||||||||||       || |||||||||||||||||||||||||||| ||||||||| ||||||  |||||||||    
T  39732882 aaaataaattaagtatgattgaagtattatatga-------tcgtttatcatgttaatatgttaactttttataaaacatttcataatgttcgtaattta 39732790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 348
Target Start/End: Original strand, 23748217 - 23748335
Alignment:
Q  235 ttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctccta 329  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| ||| || ||||| |||||||||     || ||| |||  ||| ||||||||||||    
T  23748217 ttatcgtttatcatgttaatatgttaactttttaaaagacatttcatagtgtccgtagtttaaaaatgaaaagtgaaccctcccctcccttcccctccta 23748316  T
Q  330 aaccctccatccaaacaca 348  Q
    |||||||||||||||||||    
T  23748317 aaccctccatccaaacaca 23748335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 199 - 302
Target Start/End: Complemental strand, 15224845 - 15224749
Alignment:
Q  199 aataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaa 298  Q
    |||||||||||| |||| ||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||    
T  15224845 aataaattaagtgtgattgaagtattatatga-------tcatttatcatgttaatatgttagctttttaaaaaacatttcatagtgtccgtaatttaaa 15224753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 235 - 348
Target Start/End: Original strand, 9631682 - 9631800
Alignment:
Q  235 ttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaa-----aaatgtaaactctcttctctcttcccctccta 329  Q
    ||||| ||||||||||||||||||||||||||||||  |||||| ||  || |||||||||||     ||| || ||| |||||||| ||| ||||||||    
T  9631682 ttatcgtttatcatgttaatatgttaactttttaaaggacatttcatggtgtccgtaatttaaaaacgaaaagttaaccctcttctccctttccctccta 9631781  T
Q  330 aaccctccatccaaacaca 348  Q
    |||||||||||||||||||    
T  9631782 aaccctccatccaaacaca 9631800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 348
Target Start/End: Complemental strand, 36347723 - 36347545
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| |||||||||||| |       |  ||||||||||||||||||||||| |||    
T  36347723 aaattacggactatataacatgtttttctaaaataaattaagtgtgattgaagtattatataa-------ttgtttatcatgttaatatgttaactattt 36347631  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||| || | ||| |  ||||||| |||||||     || ||||||||  || |||||||||||||||||| ||||||||||||    
T  36347630 aaaaaatatgtcatagtatccgtaatataaaaatgaaaagtgaactctctcttcccttcccctcctaaacccttcatccaaacaca 36347545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 36566971 - 36566905
Alignment:
Q  237 atcatttatcatgttaatatgttaacttttta-aaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||||||||||||||||||||||| |||||  ||| |||||| ||||||||||||||||    
T  36566971 atcatttatcatgttaatatgttaactttttataaaaaactttcataatgtccgtaatttaaaaatg 36566905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 12541894 - 12541999
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta-aaaatgtaaactctcttctctcttcccctcctaaaccctccat 339  Q
    |||||||||||||| ||||||||||||||||||||||||||| |  | ||||||||  ||| ||||| |||   ||| ||||  ||||||||||||||||    
T  12541894 tttatcatgttaatgtgttaactttttaaaaaacattttatagtatctgtaatttatgaaaagtaaa-tctaccctcccttcttctcctaaaccctccat 12541992  T
Q  340 ccaaaca 346  Q
    |||||||    
T  12541993 ccaaaca 12541999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 301
Target Start/End: Original strand, 16565868 - 16565965
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       || |||||||| || |||||||||||||||||||||| ||| ||| |  ||||||||||    
T  16565868 aaaataaattaagtgtgattgaagtattatatga-------tcgtttatcatatttatatgttaactttttaaaaaacgtttcatagtatccgtaattta 16565960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 17379940 - 17379994
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattt 295  Q
    ||||||||||||||||| |||||||||||||||||||| ||| || |||||||||    
T  17379940 tttatcatgttaatatgctaactttttaaaaaacatttcatagtgtccgtaattt 17379994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 19567003 - 19566878
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| ||||||||||| |||| |||||||||       |||||||| |||||||||    
T  19567003 aaattacggactatataacatgtttttctaaaataaattaagtgtgattgaagtattatacgaccgtttatcatt-------ttaatatgctaacttttt 19566911  T
Q  268 -aaaaaacattttataatgcccgtaatttaaaa 299  Q
     ||||||||||| ||| || | |||||||||||    
T  19566910 aaaaaaacatttcatagtgtctgtaatttaaaa 19566878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 34209592 - 34209653
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||   ||||||||||||||    
T  34209592 tttatcatgttaatatgttaactttttaaaaaatatttcatagtgtttgtaatttaaaaatg 34209653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 39821793 - 39821899
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaactctcttctctcttcccctcctaaaccctc 336  Q
    ||||||||||||||||||||||||||| |||||| |  |||| ||| || |||||||||||||| | |||||     |||     |||||||||||||||    
T  39821793 atcatttatcatgttaatatgttaactctttaaatattatttcatagtgtccgtaatttaaaaaagaaaactaaaccctc-----ccctcctaaaccctc 39821887  T
Q  337 catccaaacaca 348  Q
    ||||||||||||    
T  39821888 catccaaacaca 39821899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 27926681 - 27926742
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||||||||||||||||||||  || |||| ||| |  ||||||||||||||||    
T  27926681 tttatcatgttaatatgttaactttttaaccaaaatttaatagtatccgtaatttaaaaatg 27926742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 42316880 - 42316843
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattt 278  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  42316880 tttatcatgttaatacgttaactttttaaaaaacattt 42316843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 1583222 - 1583266
Alignment:
Q  258 ttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||||||||||||||||| ||| || ||||||||||||||||    
T  1583222 ttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatg 1583266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 37740044 - 37739974
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaac 274  Q
    |||||||||||||| |||| |||||||||||||       ||| |||||||||||||||| |||||||||| ||||||    
T  37740044 aaaataaattaagtgtgattgaagtattatatg-------atcgtttatcatgttaatatcttaactttttgaaaaac 37739974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 8426981 - 8426935
Alignment:
Q  255 atgttaactttttaaaaaacattttataatgcccgtaatttaaaaat 301  Q
    |||||||||||||||||||||||| ||| || || ||||||||||||    
T  8426981 atgttaactttttaaaaaacatttcatagtgtccttaatttaaaaat 8426935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 9427113 - 9427175
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaa-aacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||||| ||||||| |||||||  |||| ||||||||||| || ||||||||||||||||    
T  9427113 tttatcatgctaatatgctaactttaaaaaaaaacattttatagtgtccgtaatttaaaaatg 9427175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 348
Target Start/End: Original strand, 42813826 - 42813860
Alignment:
Q  314 ctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||| ||||||||||||    
T  42813826 ctctcttcccctcctaaacccttcatccaaacaca 42813860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 2381026 - 2380989
Alignment:
Q  318 cttcccctcctaaaccctccatccaaacacatcgtaag 355  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  2381026 cttcccctcctaaaccctctatccaaacacatcctaag 2380989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 31795922 - 31795878
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcat 241  Q
    |||||||||||||| |||| |||||||||||||| | ||||||||    
T  31795922 aaaataaattaagtgtgattgaagtattatatgatcgtttatcat 31795878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 31738547 - 31738663
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaa 331  Q
    ||||||||||||||||||||||||||| || |||||| |||||||| || ||||||||||||||||     ||||| |||  || |||||||||||||||    
T  31738547 atcatttatcatgttaatatgttaactcttcaaaaaatattttatagtgtccgtaatttaaaaatgaaatttaaaccctcccctttcttcccctcctaaa 31738646  T
Q  332 ccctccatccaaacaca 348  Q
    |||||||||||||||||    
T  31738647 ccctccatccaaacaca 31738663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 348
Target Start/End: Original strand, 16653011 - 16653189
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       ||||||||| |||| |||| ||||||||||||||       || |||||  ||||||||||||||||||||    
T  16653011 aaattacggactatataacatgtttttataaaataaatcaagtgtgattgaagtattatatga-------tcgtttattttgttaatatgttaacttttt 16653103  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
     |||||||||| |||||| ||||||||||||||||     ||||| |||| ||| ||||||||| |||||| | ||||||||||||    
T  16653104 caaaaacatttcataatgtccgtaatttaaaaatgaaaattaaaccctctcctcccttcccctcttaaaccattcatccaaacaca 16653189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 11785654 - 11785766
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||      |||| |||   |||||| ||||||||||||||    
T  11785654 tttatcatgttaatatgctaactttttaaaaaatatttcataatgtccgtaatttaaaaatgaaaatcaaaccctcccttctcttaccctcctaaaccct 11785753  T
Q  336 ccatccaaacaca 348  Q
    |||||||||||||    
T  11785754 ccatccaaacaca 11785766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 197 - 346
Target Start/End: Complemental strand, 31543225 - 31543078
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| |||||||||||||||| ||||| ||       ||||||||||||||||||| |||||||||| ||| |  ||||||||||    
T  31543225 aaaataaattaagtgtgattgaagtattatatgaccgtttatgat-------gttaatatgttaacttttttaaaaacatttcatagtttccgtaattta 31543133  T
Q  297 aaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaaca 346  Q
    ||||||     ||||| |||  ||| ||||||||| |||||||||||||||||||    
T  31543132 aaaatgaaaagtaaaccctcccctcccttcccctcttaaaccctccatccaaaca 31543078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 1281265 - 1281338
Alignment:
Q  235 ttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaact 308  Q
    ||||| ||||| ||||||||||||||||||||||||||| |||| ||| || |||||||||||||||| |||||    
T  1281265 ttatcgtttattatgttaatatgttaactttttaaaaaatatttcatagtgtccgtaatttaaaaatgaaaact 1281338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 350
Target Start/End: Complemental strand, 30479839 - 30479719
Alignment:
Q  235 ttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctccta 329  Q
    |||||||||||||  |||||||||||||||||||||| |||||| ||| || | |||||||||||||     || |||||||  |||  | |||||||||    
T  30479839 ttatcatttatcaccttaatatgttaactttttaaaagacatttcatagtgtctgtaatttaaaaatgaaaagtgaactctcccctccatccccctccta 30479740  T
Q  330 aaccctccatccaaacacatc 350  Q
    || ||||||||||||||||||    
T  30479739 aatcctccatccaaacacatc 30479719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 30664452 - 30664547
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| |||||||||||| ||| |||||||| |       ||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  30664452 aaaataaattaagtgtgattgaagtattatataaccgtttatcatat-------taatatgttaactttttaaaaaatattttgtaatgtccgtaattta 30664544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 1027002 - 1026904
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    ||||||||||||||||||| ||||||||||||||       || |||||||||||||||||||||||||| | |||| |||| ||| || ||| ||||||    
T  1027002 aaaataaattaagtatgattgaagtattatatga-------tcgtttatcatgttaatatgttaacttttgataaaatatttcatagtgtccgcaattta 1026910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 16024278 - 16024393
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat----gtaaactctcttctctcttcccctcctaaac 332  Q
    |||||||||||||||  ||  | || ||| |||||| |||||||||||| ||||||||||||||     ||||||||||  ||| ||||||||||||||     
T  16024278 atcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccgtaatttaaaaagaaaagtaaactctcccctcccttcccctcctaaat 16024377  T
Q  333 cctccatccaaacaca 348  Q
    ||||||||||||||||    
T  16024378 cctccatccaaacaca 16024393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 9718595 - 9718534
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||||||||||||| |||||||||||||| ||||| ||| || ||||||||||||||||    
T  9718595 tttatcatgttaatatgctaactttttaaaaaccatttcatagtgtccgtaatttaaaaatg 9718534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 40633109 - 40633000
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaactctcttctctcttcccctcctaaaccctc 336  Q
    |||||||||||||||  ||  | || ||| ||||||  ||||||||||| |||||||||||||  |||| | ||| |||| |||||||||||||||||||    
T  40633109 atcatttatcatgttgttaattcaattttctaaaaattattttataatgtccgtaatttaaaa--gtaagccctcctctcccttcccctcctaaaccctc 40633012  T
Q  337 catccaaacaca 348  Q
    ||| ||||||||    
T  40633011 cattcaaacaca 40633000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 11575559 - 11575485
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattt 278  Q
    |||||||||||||| ||||  |||||||||||||       || ||||||||||||||||||||||||||||||||||||||    
T  11575559 aaaataaattaagtgtgattaaagtattatatga-------tcgtttatcatgttaatatgttaactttttaaaaaacattt 11575485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 4247670 - 4247574
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||||||||  |||||||||||||       || ||||||||| |||||||||||||| |||||||| |||||| | || ||||||||||    
T  4247670 aaaataaattaagtatgatttaagtattatatga-------tcgtttatcatgctaatatgttaacttcttaaaaaatattttaaagtg-ccgtaattta 4247579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 302
Target Start/End: Original strand, 6315125 - 6315251
Alignment:
Q  169 aattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttta 268  Q
    ||||||||| |||||||||||       |||||||||||||| |||| ||||||||||| ||       || ||||||| ||||||||||||| |||||     
T  6315125 aattacggactatataacatgtttttctaaaataaattaagtgtgattgaagtattatacga-------tcgtttatcaagttaatatgttaattttttt 6315217  T
Q  269 aaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||| ||| || ||||| ||||||||||    
T  6315218 aaaaacatttcatagtgtccgtattttaaaaatg 6315251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 36308971 - 36309081
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    ||||||||||||||||||| |||||| |||| | |||| | ||||  ||||||||||| |||     ||||| |||  ||| ||||||||||||||||||    
T  36308971 tttatcatgttaatatgtttacttttaaaaatatatttcacaatgtacgtaatttaaagatgaaaagtaaaccctcccctcccttcccctcctaaaccct 36309070  T
Q  336 ccatccaaaca 346  Q
    |||||||||||    
T  36309071 ccatccaaaca 36309081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 37923198 - 37923133
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||||||||||| |||||| |||||||||||||| ||| ||  | |||||||||||||    
T  37923198 atcatttatcatgttaatattttaactctttaaaaaacatttcatagtgttcataatttaaaaatg 37923133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 43732842 - 43732927
Alignment:
Q  268 aaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||| |||||||||||| |||||||||||||| |     ||||| |||  ||| |||||||||||||||||||||||||||||||    
T  43732842 aaaaatcattttataatgtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccctcctaaaccctccatccaaacaca 43732927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 29358455 - 29358396
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat 301  Q
    ||||| ||||||||||||||| ||||||||||| |||||||| || |||||||||||||||    
T  29358455 tttataatgttaatatgttaa-tttttaaaaaatattttatagtgtccgtaatttaaaaat 29358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 42650518 - 42650405
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| ||||||||||||||   |||||||| ||| |     |||||||||||||||    
T  42650518 aaattacggaatatataacatgtttttctaaaataaattaagtgtgattgaagtattatatgattgtttatcatgtataa----catatgttaacttttt 42650423  T
Q  268 aaaaaacattttataatg 285  Q
    | ||||||||| ||||||    
T  42650422 ataaaacatttcataatg 42650405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 3726965 - 3726867
Alignment:
Q  255 atgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||| |||||||||||||  ||  || ||||||||||||||||     |||||  || | || |||||||||||||||||||||||||||||||    
T  3726965 atgttaactatttaaaaaacattccatggtgtccgtaatttaaaaatgaaaaataaaccgtcctttcccttcccctcctaaaccctccatccaaacaca 3726867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 8815179 - 8815145
Alignment:
Q  314 ctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||||||||    
T  8815179 ctctcttcccctcctaaaccctccatccaaacaca 8815145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 34634277 - 34634331
Alignment:
Q  247 atgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat 301  Q
    ||||||||||||||||||||||||| | |||| ||| || |||||||||||||||    
T  34634277 atgttaatatgttaactttttaaaagatatttcatagtgtccgtaatttaaaaat 34634331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 40990366 - 40990268
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| |||||||||||||       |||  |||||||||||||||||||||| |||    
T  40990366 aaattacggactatataacatgtttctttaaaataaattaagtctgattgaagtattatatg-------atcgcttatcatgttaatatgttaactcttt 40990274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 41103542 - 41103508
Alignment:
Q  314 ctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||||||||    
T  41103542 ctctcttcccctcctaaaccctccatccaaacaca 41103508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 7503070 - 7503033
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattt 278  Q
    |||||||||||||||||||||||||||| |||||||||    
T  7503070 tttatcatgttaatatgttaactttttataaaacattt 7503033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 2248586 - 2248640
Alignment:
Q  247 atgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat 301  Q
    ||||||||| |||||||||| |||||| |||| ||| || |||||||||||||||    
T  2248586 atgttaataagttaacttttaaaaaaatatttcatagtgtccgtaatttaaaaat 2248640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 37032507 - 37032541
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaaca 275  Q
    |||||||| ||||||||||||||||||||||||||    
T  37032507 tttatcatcttaatatgttaactttttaaaaaaca 37032541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 29691038 - 29691001
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattt 278  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  29691038 tttatcatgttaatatgttaacttttttaaaaatattt 29691001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 2412996 - 2412968
Alignment:
Q  320 tcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||    
T  2412996 tcccctcctaaaccctccatccaaacaca 2412968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 346
Target Start/End: Original strand, 2481983 - 2482011
Alignment:
Q  318 cttcccctcctaaaccctccatccaaaca 346  Q
    |||||||||||||||||||||||||||||    
T  2481983 cttcccctcctaaaccctccatccaaaca 2482011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 3727008 - 3726964
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcat 241  Q
    ||||||||||||| ||||| ||| |||||||||||| ||||||||    
T  3727008 aaaataaattaagcatgattgaaatattatatgaccgtttatcat 3726964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 7394671 - 7394703
Alignment:
Q  318 cttcccctcctaaaccctccatccaaacacatc 350  Q
    ||||||||||||||||||| |||||||||||||    
T  7394671 cttcccctcctaaaccctcaatccaaacacatc 7394703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 7979190 - 7979142
Alignment:
Q  302 gtaaactctcttctctcttcccctcctaaaccctccatccaaacacatc 350  Q
    |||||||||| |||| ||||| || |||||||||| |||||||||||||    
T  7979190 gtaaactctcctctcccttcctcttctaaaccctcaatccaaacacatc 7979142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 9718521 - 9718493
Alignment:
Q  320 tcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||    
T  9718521 tcccctcctaaaccctccatccaaacaca 9718493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 11033545 - 11033577
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaa 273  Q
    ||||||||||||||||||||| |||||||||||    
T  11033545 tttatcatgttaatatgttaattttttaaaaaa 11033577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 13405104 - 13405169
Alignment:
Q  241 tttatcatgttaatatgttaa----ctttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||||||||||| |||||    ||||| |||||| ||||| ||||| ||||||||||||||||    
T  13405104 tttatcatgttaatacgttaattcacttttaaaaaaatattttttaatgtccgtaatttaaaaatg 13405169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 33922648 - 33922680
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaa 273  Q
    ||||||||| |||||||||||||||||||||||    
T  33922648 tttatcatgataatatgttaactttttaaaaaa 33922680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 348
Target Start/End: Original strand, 38198199 - 38198283
Alignment:
Q  264 ttttaaaaaacattttataatgcccgtaatttaaaaatgtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||| |||||| || | |||||||||||||| ||| |   | ||| | ||| |||| ||||||||||||||||||||    
T  38198199 ttttaaaaaacactttatagtgtctgtaatttaaaaatgaaaagtaagtcctcccatccactccaaaaccctccatccaaacaca 38198283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 33655261 - 33655163
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||    
T  33655261 aaaataaattaagtgtgattgaagtattatatga-------tcatttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaattta 33655169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 168 - 348
Target Start/End: Complemental strand, 40196714 - 40196536
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| ||||||||||||||       |  ||||||| ||| |||||||||||||||    
T  40196714 aaattacggaatatataacatgtttttctaaaataaattaagtgtgattgaagtattatatga-------ttgtttatcaggttgatatgttaacttttt 40196622  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    | ||||||||||||| || |||||||| ||||||     |||||| ||| |||| |||||||||| ||||||||||||||||||||    
T  40196621 ataaaacattttatagtgtccgtaattcaaaaatgaaaagtaaaccctcctctcccttcccctcccaaaccctccatccaaacaca 40196536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 168 - 348
Target Start/End: Complemental strand, 41497139 - 41496961
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| |||| |||||||||       |||||||||||||||||||||||| |||||    
T  41497139 aaattacggactatataacatgtttttctaaaataaattaagtgtgattgaagaattatatga-------tcatttatcatgttaatatgttaaattttt 41497047  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||  || || |||||||||||||||     |||||   ||  ||| |||||||||||||||||||||||||||||||    
T  41497046 aaaaaacatttcctattgtccgtaatttaaaaataaaaagtaaatcatcccctcccttcccctcctaaaccctccatccaaacaca 41496961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 47390984 - 47391096
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||||||||||||||||| ||||||||||  ||||||| || ||||||||||||||||      ||||||||  ||| ||||||||| ||||||||    
T  47390984 tttatcatgttaatatgttaacattttaaaaaatgttttatagtgtccgtaatttaaaaatgaaaaccaaactctcccctcccttcccctcttaaaccct 47391083  T
Q  336 ccatccaaacaca 348  Q
    |||||||||||||    
T  47391084 ccatccaaacaca 47391096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 4833647 - 4833537
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    ||||||||||||||| |||||||||||| ||||||||| ||| || | ||||||||||||||     ||||| |||  ||| ||||||||||||||||||    
T  4833647 tttatcatgttaataggttaactttttataaaacatttcatagtgtctgtaatttaaaaatgaaaagtaaaccctcccctcccttcccctcctaaaccct 4833548  T
Q  336 ccatccaaaca 346  Q
    |||||||||||    
T  4833547 ccatccaaaca 4833537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 18231714 - 18231826
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||   |||||||||||||     |||||  |||  ||| ||||||||||||||| ||    
T  18231714 tttatcatgttaatatgttaactttttaaaaaacatttcatagtgtttgtaatttaaaaatgaaaagtaaatcctcccctcccttcccctcctaaacgct 18231813  T
Q  336 ccatccaaacaca 348  Q
    |||||||||||||    
T  18231814 ccatccaaacaca 18231826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 24970318 - 24970220
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       || ||||||| ||||||||||||||||||||||||| |||| ||| |  ||||||||||    
T  24970318 aaaataaattaagtgtgattgaagtattatatga-------tcgtttatcaagttaatatgttaactttttaaaaaatatttcatagtatccgtaattta 24970226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 32872897 - 32872790
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaactctcttctctcttcccctcctaaaccctccatc 340  Q
    ||||||||||||||||||||||||||||||||  ||||||||||   ||||||||||||| | ||| |    ||||  ||||||||||||||||| ||||    
T  32872897 tttatcatgttaatatgttaactttttaaaaagtattttataatattcgtaatttaaaaaagaaaagtaaactctcctttcccctcctaaacccttcatc 32872798  T
Q  341 caaacaca 348  Q
     |||||||    
T  32872797 taaacaca 32872790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 34235160 - 34235062
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       |  |||||||| ||||||||||||||||||| ||||||||| ||| || ||||||||||    
T  34235160 aaaataaattaagtgtgattgaagtattatatga-------ttgtttatcatattaatatgttaactttttataaaacatttcatagtgtccgtaattta 34235068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 300
Target Start/End: Complemental strand, 22163262 - 22163167
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       || |||||||||||||||||||| |||| |||||||||||| ||| || ||||||||||    
T  22163262 aaaataaattaagtgtgattgaagtattatatga-------tcgtttatcatgttaatatgtta-ctttctaaaaaacatttcatagtgtccgtaattta 22163171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 300
Target Start/End: Complemental strand, 22221970 - 22221875
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       || |||||||||||||||||||| |||| |||||||||||| ||| || ||||||||||    
T  22221970 aaaataaattaagtgtgattgaagtattatatga-------tcgtttatcatgttaatatgtta-ctttctaaaaaacatttcatagtgtccgtaattta 22221879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 348
Target Start/End: Complemental strand, 31553287 - 31553189
Alignment:
Q  252 aatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaa---actctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||| |  ||   || |||| ||| |||||||||||||| ||||||||||||||||    
T  31553287 aatatgttaactttttaaaaaacatttcataatgtccgttatttaaaattaaaagtgaccctctcctcccttcccctcctaaa-cctccatccaaacaca 31553189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 42306466 - 42306570
Alignment:
Q  249 gttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaa 343  Q
    ||||||||| |||||||||||||||||||| ||| || ||||||||||||||||     |||||  ||  |||  |||||||||||||||||| ||||||    
T  42306466 gttaatatgctaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaattaaaccatcccctcaattcccctcctaaaccctcaatccaa 42306565  T
Q  344 acaca 348  Q
    |||||    
T  42306566 acaca 42306570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 10315761 - 10315872
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    |||||| |||||||||||||| |||||||||||||||| ||| || ||||| ||||||||||     ||||    | |||| |||||||||||||||| |    
T  10315761 tttatcttgttaatatgttaaatttttaaaaaacatttcatagtgtccgtattttaaaaatgaaaaataaatcaccctctcccttcccctcctaaacctt 10315860  T
Q  336 ccatccaaacac 347  Q
    ||||||||||||    
T  10315861 ccatccaaacac 10315872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 13771062 - 13770952
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||||||||||||||||||||||  | || |||||||| || |||||||||||||||     |||||  |||  ||| |||||||||||||| |||    
T  13771062 tttatcatgttaatatgttaacttttt--ataatattttatagtgtccgtaatttaaaaataataagtaaatcctcccctcccttcccctcctaaatcct 13770965  T
Q  336 ccatccaaacaca 348  Q
    | |||||||||||    
T  13770964 caatccaaacaca 13770952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 42087131 - 42087184
Alignment:
Q  249 gttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||||| |||||||||||||||| || |||||| |||||||||||||||||    
T  42087131 gttaatatgctaactttttaaaaaactttgtataatacccgtaatttaaaaatg 42087184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 13425236 - 13425124
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    ||||||||||||||||||| |||||| |||||| ||||| || || | |||||||||||||      |||||  || |||  ||||||||||||||||||    
T  13425236 tttatcatgttaatatgttgacttttgaaaaaatattttgtagtgtctgtaatttaaaaataaaaaataaaccatcctcttccttcccctcctaaaccct 13425137  T
Q  336 ccatccaaacaca 348  Q
    | |||||||||||    
T  13425136 ctatccaaacaca 13425124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 302
Target Start/End: Complemental strand, 40572417 - 40572290
Alignment:
Q  167 aaaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttt 266  Q
    ||||||||||| ||||||| |||       |||||||||||||  ||||  ||||||||||||||||||||||||       |||||||||||||| |||    
T  40572417 aaaattacggactatataatatgtttctctaaaataaattaagcgtgattaaagtattatatgaccttttatcat-------gttaatatgttaac-ttt 40572326  T
Q  267 taaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||| ||||||||    ||||||||||||||||    
T  40572325 taaaaaatattttatagcatccgtaatttaaaaatg 40572290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 36267643 - 36267557
Alignment:
Q  267 taaaaaacattttataatgcccgtaatttaaaaatgtaaact-----ctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||| |||||||||||  |||||||||||||| | |||||     |||  ||| |||||||||||||||||||||||||||||||    
T  36267643 taaaaatcattttataatatccgtaatttaaaaaagaaaactaagccctcccctcccttcccctcctaaaccctccatccaaacaca 36267557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 1051614 - 1051555
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||| ||||||||||||||||||||||||||| ||  || ||||||||||||||||    
T  1051614 tttatcatgt-aatatgttaactttttaaaaaacatttcat-gtgtccgtaatttaaaaatg 1051555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 25887320 - 25887432
Alignment:
Q  241 tttatcatgttaatatgttaactttt-taaaaaacattttataatgcccgtaatttaa-----aaatgtaaactctcttctctcttcccctcctaaaccc 334  Q
    |||||||| |||||||||||||||||  ||||||||||| || ||   ||||||||||     ||||||||||||||  ||| |||||||||||||||||    
T  25887320 tttatcatattaatatgttaacttttaaaaaaaacatttcatgattttcgtaatttaaaaatgaaatgtaaactctcccctcccttcccctcctaaaccc 25887419  T
Q  335 tccatccaaacaca 348  Q
    | || |||||||||    
T  25887420 ttca-ccaaacaca 25887432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 33519172 - 33519288
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaa-----aatgtaaactctcttctctcttcccctcctaaa 331  Q
    |||||||||||||||  ||  | || ||| |||||| |||||||||||| | ||||||||||     || |||| | |||  ||| ||||||||||||||    
T  33519172 atcatttatcatgttgttaattcaattttctaaaaatcattttataatgtctgtaatttaaagaagaaaagtaatccctcccctcccttcccctcctaaa 33519271  T
Q  332 ccctccatccaaacaca 348  Q
    |||||||||||||||||    
T  33519272 ccctccatccaaacaca 33519288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 47229948 - 47229888
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat 301  Q
    |||||||||||||||||||  |||||||| ||| |||| ||||| |||||| |||||||||    
T  47229948 tttatcatgttaatatgttcgctttttaagaaatatttcataatacccgtagtttaaaaat 47229888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 31571664 - 31571710
Alignment:
Q  302 gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||  ||| ||||||||||||||||||| |||||||||||    
T  31571664 gtaaactctcccctcgcttcccctcctaaaccctcaatccaaacaca 31571710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 348
Target Start/End: Original strand, 33655314 - 33655348
Alignment:
Q  314 ctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||||||||||||||| |||||||||||    
T  33655314 ctctcttcccctcctaaaccctcaatccaaacaca 33655348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 348
Target Start/End: Complemental strand, 48881592 - 48881562
Alignment:
Q  318 cttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||||    
T  48881592 cttcccctcctaaaccctccatccaaacaca 48881562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Complemental strand, 37417749 - 37417712
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattt 278  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  37417749 tttatcatgtgaatatgttaactttttagaaaacattt 37417712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 39856047 - 39855953
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatc-atttatcatgttaatatgttaa 261  Q
    |||||||||| |||||||||||       |||||||||||||| |||   ||||||||||||| | |||||| || || ||||||||||||||||    
T  39856047 aaattacggactatataacatgtttttctaaaataaattaagtgtgacttaagtattatatgatcatttatcaatataacatgttaatatgttaa 39855953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 17853072 - 17853100
Alignment:
Q  320 tcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||    
T  17853072 tcccctcctaaaccctccatccaaacaca 17853100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 18063714 - 18063670
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcat 241  Q
    |||||||||||||| |||| |||||||||||||| | ||||||||    
T  18063714 aaaataaattaagtgtgattgaagtattatatgatcatttatcat 18063670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 302
Target Start/End: Original strand, 19835838 - 19835898
Alignment:
Q  242 ttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||| |||||| ||| |||| |||||||| ||||||||||| |  ||||||||||||||||    
T  19835838 ttatgatgttattattttaattttttaaagaacattttatagtttccgtaatttaaaaatg 19835898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 43230364 - 43230396
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaa 273  Q
    |||||||||||||||||||||||||| ||||||    
T  43230364 tttatcatgttaatatgttaacttttaaaaaaa 43230396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 48015401 - 48015445
Alignment:
Q  302 gtaaactctcttctctcttcccctcctaaaccctccatccaaaca 346  Q
    |||| ||||| |||| ||||||||||||| |||||||||||||||    
T  48015401 gtaagctctcatctcccttcccctcctaatccctccatccaaaca 48015445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 197 - 348
Target Start/End: Complemental strand, 40095086 - 40094937
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       || |||||||||||||| ||||||||||||| ||||||||| ||| || ||||||||||    
T  40095086 aaaataaattaagtgtgattgaagtattatatga-------tcgtttatcatgttaatttgttaactttttataaaacatttcatagtgtccgtaattta 40094994  T
Q  297 aaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||     |||||| |||  ||  |||||||||||||||||||||||||||||||    
T  40094993 aaaatgaaaagtaaaccctccccttccttcccctcctaaaccctccatccaaacaca 40094937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 198 - 350
Target Start/End: Original strand, 8529891 - 8530041
Alignment:
Q  198 aaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaa 297  Q
    ||||||||||||| |||| ||||||||||||||       || |||| |||||||||||||||||||||||||||| |||| ||| || |||||||||||    
T  8529891 aaataaattaagtgtgattgaagtattatatga-------tcgtttaccatgttaatatgttaactttttaaaaaatatttcatagtgtccgtaatttaa 8529983  T
Q  298 aaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacacatc 350  Q
    |||||     |||||| ||  ||| ||||||||||||||| || ||||||||||||||    
T  8529984 aaatgaaaagtaaactttcacctcccttcccctcctaaactcttcatccaaacacatc 8530041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 10392000 - 10392108
Alignment:
Q  241 tttatcatgttaatatgttaacttttt-aaaaaacattttataatgcccgtaatttaaaaatgtaaactctcttctctcttcccctcctaaaccctccat 339  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||   |||||||||||| | ||| |    |||||| ||||||||||||||||||||    
T  10392000 tttatcatgttaatatgttaactttttaaaaaaacatttaataatgtttgtaatttaaaaacgaaaagtaaactctctcctcccctcctaaaccctccat 10392099  T
Q  340 ccaaacaca 348  Q
    |||||||||    
T  10392100 ccaaacaca 10392108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 348
Target Start/End: Original strand, 30010394 - 30010572
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| || | ||||||||||||||       || ||||| ||||||||||||||||| |||    
T  30010394 aaattacggactatataacatgtttttctaaaataaattaagtgtggttgaagtattatatga-------tcgtttataatgttaatatgttaactattt 30010486  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||  || || ||||||||| ||||||     ||||| |||  ||| |||||||| ||||||||||||||||||||||    
T  30010487 aaaaaacatttcgtagtgtccgtaatttcaaaatgaaaagtaaaccctcccctcccttccccttctaaaccctccatccaaacaca 30010572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 12234134 - 12234250
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaa 331  Q
    ||||| ||| ||||||||||| ||||||| ||||||||||||  || || ||||||||||||||||     ||||| |||  ||| ||||||||||||||    
T  12234134 atcatatattatgttaatatgctaactttataaaaaacatttcgtagtgtccgtaatttaaaaatgaaaactaaaccctcccctcccttcccctcctaaa 12234233  T
Q  332 ccctccatccaaacaca 348  Q
    |||||||||||||||||    
T  12234234 ccctccatccaaacaca 12234250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 197 - 346
Target Start/End: Complemental strand, 50744434 - 50744291
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaact-ttttaaaaaacattttataatgcccgtaattt 295  Q
    |||||||||||||| |||| ||||||||||||||       || ||||||||||||||||||||||| ||| ||||||||||| ||| || |||||||||    
T  50744434 aaaataaattaagtgtgattgaagtattatatga-------tcgtttatcatgttaatatgttaactctttaaaaaaacatttcatagtgtccgtaattt 50744342  T
Q  296 aaaaatgtaaactctcttctctcttcccctcctaaaccctccatccaaaca 346  Q
    ||||||| || ||   | |||  |||||||| |||| ||||||||||||||    
T  50744341 aaaaatgaaatctaaatcctccattcccctcataaatcctccatccaaaca 50744291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 49946741 - 49946643
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||| | |||| ||||||||||||||       | ||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||    
T  49946741 aaaataaattaaatgtgattgaagtattatatga-------taatttatcatgttaatatgttaacttttaaaaaaatattttatagtgtccgtaattta 49946649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 348
Target Start/End: Complemental strand, 38510016 - 38509898
Alignment:
Q  235 ttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctccta 329  Q
    ||||| |||||| |||||| ||||||| ||||||||| |||||| ||| || |||||||||||||||     || ||| ||| |||| ||||||||||||    
T  38510016 ttatcgtttatcgtgttaagatgttaattttttaaaagacatttcatagtgtccgtaatttaaaaatgaaaagtgaaccctcctctcccttcccctccta 38509917  T
Q  330 aaccctccatccaaacaca 348  Q
    ||||||| |||||||||||    
T  38509916 aaccctctatccaaacaca 38509898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 20576247 - 20576137
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||||||||||| |||||| |||||||||||||| |   || ||||||||||||||||     |||||||||  ||| ||||||||||||||||||    
T  20576247 tttatcatgttaatatattaactctttaaaaaacatttcag--tgtccgtaatttaaaaatgaaatctaaactctcccctcccttcccctcctaaaccct 20576150  T
Q  336 ccatccaaacaca 348  Q
    | |||||||||||    
T  20576149 ctatccaaacaca 20576137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 36285690 - 36285629
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||  |||||||||||||||    
T  36285690 tttatcatgttaatatgttaactttttaaaaaatattttatagtgttcgtaatttaaaaatg 36285629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 41498532 - 41498593
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||    
T  41498532 tttatcatgttaatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatg 41498593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 7444623 - 7444735
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    ||||| |||||||||||||||||||||||||| ||||||||| || ||||||||| ||||||     ||||| |||  |||||||||| | |||||| ||    
T  7444623 tttattatgttaatatgttaactttttaaaaatcattttatagtgtccgtaattttaaaatgaaaactaaaccctcccctctcttccctttctaaactct 7444722  T
Q  336 ccatccaaacaca 348  Q
     ||||||||||||    
T  7444723 tcatccaaacaca 7444735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 45585868 - 45585760
Alignment:
Q  167 aaaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttt 266  Q
    ||||||||||| |||||||||||       |||||||||||||| |||| |||||| |||||||       || ||||||||||||||||||||||||||    
T  45585868 aaaattacggactatataacatgtttttttaaaataaattaagtgtgatcgaagtactatatga-------tcgtttatcatgttaatatgttaactttt 45585776  T
Q  267 taaaaaacattttata 282  Q
     |||||||||||||||    
T  45585775 aaaaaaacattttata 45585760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 32951471 - 32951373
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||| ||       || |||||||||||||||||||||||||||| ||||||||| ||  || ||||||||||    
T  32951471 aaaataaattaagtgtgattgaagtattatacga-------tcgtttatcatgttaatatgttaactttttataaaacatttcattgtgtccgtaattta 32951379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 43552108 - 43552051
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||||||||||||||||||||||||||||| ||||    |||||||||||||||    
T  43552108 tttatcatgttaatatgttaactttttaaaaaacatttcataa----cgtaatttaaaaatg 43552051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 348
Target Start/End: Complemental strand, 2859114 - 2858936
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||||||| |||| |||||||||||||       ||  ||||| |||| | ||||||||||||||    
T  2859114 aaattacggactatataacatgtttttcaaaaataaattaagtgtgattgaagtattatatg-------attgtttataatgtaagtatgttaacttttt 2859022  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||| ||||||| |||  | | |||||||| ||||     |||||| |||  ||| ||| |||||||||||||||||||||||||||    
T  2859021 aaataacatttcatagggtctgtaatttagaaatgaaaagtaaaccctcccctccctttccctcctaaaccctccatccaaacaca 2858936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 2470819 - 2470734
Alignment:
Q  268 aaaaaacattttataatgcccgtaatttaaaaatgtaaact-----ctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||||||| ||  ||||||||||||||||||||      |||   ||||||||||||||||||||||||||||||||||    
T  2470819 aaaaaacattttatagtgttcgtaatttaaaaatgtaaacgaaaccctccattctcttcccctcctaaaccctccatccaaacaca 2470734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 35349578 - 35349470
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaact---ctcttctctcttcccctcctaaaccctcc 337  Q
    |||||||||||||||||||||||||||| |||||||||   | || |||||||||||||||| ||| |   | || | | | ||||||| ||||||||||    
T  35349578 tttatcatgttaatatgttaactttttataaaacattt--cagtgtccgtaatttaaaaatgaaaagtaaaccctccccccctcccctcttaaaccctcc 35349481  T
Q  338 atccaaacaca 348  Q
    |||||||||||    
T  35349480 atccaaacaca 35349470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 349
Target Start/End: Original strand, 35512921 - 35513038
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaa 331  Q
    |||||||||||||||  ||  | || ||| |||||| |||||||||||| || |||||||||||      |||| | |||  ||| ||||||||||||||    
T  35512921 atcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataatttaaaaaataaaagtaagccctcccctcccttcccctcctaaa 35513020  T
Q  332 ccctccatccaaacacat 349  Q
    ||||||||||||||||||    
T  35513021 ccctccatccaaacacat 35513038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 28770852 - 28770909
Alignment:
Q  242 ttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat 301  Q
    |||||||||||||||||||| |||||| ||||||||| ||||||   |||||||||||||    
T  28770852 ttatcatgttaatatgttaattttttataaaacatttcataatg--tgtaatttaaaaat 28770909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 51597759 - 51597854
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       |  |||||||| ||||||||||||||||||||||| ||||| ||| ||  | |||||||    
T  51597759 aaaataaattaagtgtgattgaagtattatatga-------ttgtttatcatcttaatatgttaactttttaaaaaccatttcatagtgttcataattta 51597851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 350
Target Start/End: Original strand, 1344749 - 1344780
Alignment:
Q  319 ttcccctcctaaaccctccatccaaacacatc 350  Q
    ||||||||||||||||||||||||||||||||    
T  1344749 ttcccctcctaaaccctccatccaaacacatc 1344780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 42230629 - 42230707
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttata 282  Q
    |||||||||||||| |||| ||||||||||||||       |  ||||| |||||||||| |||||||| ||||||||||||||||    
T  42230629 aaaataaattaagtgtgattgaagtattatatga-------ttgtttattatgttaatattttaactttataaaaaacattttata 42230707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 20607427 - 20607457
Alignment:
Q  318 cttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||||    
T  20607427 cttcccctcctaaaccctccatccaaacaca 20607457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 26941043 - 26941085
Alignment:
Q  318 cttcccctcctaaaccctccatccaaacacatcgtaaggatat 360  Q
    ||||||||||||||||||| ||||||||||| | |||||||||    
T  26941043 cttcccctcctaaaccctcaatccaaacacaccctaaggatat 26941085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 41676370 - 41676470
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactt--tttaaaaaacattttataatgcccgtaatt 294  Q
    |||||||||||||| |||| | ||||||||||||       || ||||||||||||||||||||| ||     ||||||||||||||| || ||||||||    
T  41676370 aaaataaattaagtgtgattgtagtattatatga-------tcgtttatcatgttaatatgttaatttaaaaaaaaaaacattttatagtgtccgtaatt 41676462  T
Q  295 taaaaatg 302  Q
    ||||||||    
T  41676463 taaaaatg 41676470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 35512666 - 35512638
Alignment:
Q  320 tcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||    
T  35512666 tcccctcctaaaccctccatccaaacaca 35512638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 44211058 - 44211014
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcat 241  Q
    |||||||||||||| |||| |||||||||||||| | ||||||||    
T  44211058 aaaataaattaagtgtgattgaagtattatatgatcgtttatcat 44211014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 39307 - 39190
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactct-cttctctcttcccctcctaa 330  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||     |||||| || |  |||  ||||||||||||    
T  39307 atcatttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctccccctcatttcccctcctaa 39208  T
Q  331 accctccatccaaacaca 348  Q
    ||||||||||||||||||    
T  39207 accctccatccaaacaca 39190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 28279629 - 28279531
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||| ||||| |||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||    
T  28279629 aaaataaactaagtgtgattgaagtattatatga-------tcatttatcatgttaatatgttaactttttaaaaaacatttcataatgtccataattta 28279537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 36363160 - 36363271
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    ||||||||| ||||||||||||||| ||||| |||||||||| |  |||||||||||||||     || |||||||| ||| ||||||||||||||||||    
T  36363160 tttatcatgctaatatgttaactttctaaaagacattttatagtatccgtaatttaaaaatgaaaagtgaactctctcctcccttcccctcctaaaccct 36363259  T
Q  336 ccatccaaacac 347  Q
    ||||||||||||    
T  36363260 ccatccaaacac 36363271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 255 - 348
Target Start/End: Original strand, 1657955 - 1658053
Alignment:
Q  255 atgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||     ||||| |||  ||| |||||||||||||||||||||||||||||||    
T  1657955 atgttaactttttaaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctcccttcccctcctaaaccctccatccaaacaca 1658053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 13634839 - 13634951
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||  ||||||||||||||     |||| | |||  ||| ||||||||||||||||||    
T  13634839 tttatcatgttaatatgttaactttttaaaaaacatttcatagtgttcgtaatttaaaaatgaaaagtaacccctcccctcccttcccctcctaaaccct 13634938  T
Q  336 ccatccaaacaca 348  Q
    | |||||||||||    
T  13634939 caatccaaacaca 13634951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 16501910 - 16501839
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaact 308  Q
    ||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||    
T  16501910 atcatttattatgttaatatgttaacttttaaaaaaacatttcataatgtccgtaatttaaaaatgaaaact 16501839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 348
Target Start/End: Original strand, 16938544 - 16938719
Alignment:
Q  171 ttacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaa 270  Q
    ||||||| |||||||||||       |||||||||||||| |||| ||| ||||||||||       |||||||||||||||| ||||||||| ||||||    
T  16938544 ttacggactatataacatgtttctctaaaataaattaagtgtgattgaaatattatatga-------tcatttatcatgttaacatgttaactctttaaa 16938636  T
Q  271 aaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||| ||| || | ||||||||||||||     ||||| |||  |||  |||| |||||||||||||||||||||||||    
T  16938637 aaacatttcatagtgtcagtaatttaaaaatgaaatctaaaccctcccctccattcctctcctaaaccctccatccaaacaca 16938719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 168 - 348
Target Start/End: Original strand, 7544198 - 7544376
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       ||||||||| |||| |||| ||||||||||||||       |  ||||| ||||||||||| |||||||||    
T  7544198 aaattacggactatataacatgtttttctaaaataaatcaagtgtgattgaagtattatatga-------ttgtttattatgttaatatgctaacttttt 7544290  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||| ||| || ||||||||||||||||      |||| |||  ||  |||||||||||||||||||||||||||||||    
T  7544291 aaaaaacatttcatagtgtccgtaatttaaaaatgaaaaccaaaccctccccttccttcccctcctaaaccctccatccaaacaca 7544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 20146981 - 20146916
Alignment:
Q  242 ttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaac 307  Q
    ||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||||    
T  20146981 ttatcatgttaatatgttaactttttaaaaaacatttcatagtgaccgtaatttaaaaatgaaaac 20146916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 327
Target Start/End: Complemental strand, 4373719 - 4373591
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||| ||||||||||       ||||||||||||||||||||||||||||| |||||| |||| | | || ||||||||||    
T  4373719 aaaataaattaagtgtgattgaaatattatatga-------tcatttatcatgttaatatgttaacttttaaaaaaatatttcacagtgtccgtaattta 4373627  T
Q  297 aaaat-----gtaaactctcttctctcttcccctcc 327  Q
    |||||     ||||||||||  ||||||||||||||    
T  4373626 aaaattaaaagtaaactctccactctcttcccctcc 4373591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 14245204 - 14245092
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaa-----aaatgtaaactctcttctctcttcccctcctaaaccct 335  Q
    ||||||||||||||||||||||||| |||||||||||| | | || |||||||||||     ||| |||||  |||  ||| ||||||||||||||||||    
T  14245204 tttatcatgttaatatgttaactttctaaaaaacatttcacagtgtccgtaatttaaaaaagaaaagtaaatcctcccctcccttcccctcctaaaccct 14245105  T
Q  336 ccatccaaacaca 348  Q
    | |||||||||||    
T  14245104 caatccaaacaca 14245092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 355
Target Start/End: Original strand, 26415021 - 26415141
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttct-ctcttcccctcctaaaccc 334  Q
    |||||||||||||||||||||||||||| ||||||||| ||| || | |||| ||||||||     ||||||||||  || || | |||||| |||||||    
T  26415021 tttatcatgttaatatgttaactttttataaaacatttcatagtgtctgtaacttaaaaatgaaaagtaaactctcccctcctttccccctcataaaccc 26415120  T
Q  335 tccatccaaacacatcgtaag 355  Q
    |||||||||||||| ||||||    
T  26415121 tccatccaaacacaccgtaag 26415141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 9856971 - 9857069
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    ||||||||| |||| |||| ||||||||||||||       || ||||| |||||||||||||||||||||||||||||||| ||| || |||||| |||    
T  9856971 aaaataaatcaagtgtgattgaagtattatatga-------tcgtttattatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaactta 9857063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 10072800 - 10072726
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattt 278  Q
    ||||||||||||||||||| ||||||||||||||       || ||||||||||||||||||||||||||||||||| ||||    
T  10072800 aaaataaattaagtatgattgaagtattatatga-------tcgtttatcatgttaatatgttaactttttaaaaaatattt 10072726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 20513602 - 20513500
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||    | | ||| ||||||||| |||||||||||||||||||||||||||| ||| || | ||| ||||    
T  20513602 aaaataaattaagtgtgattgaagtattatata---tatgatcgtttatcatgataatatgttaactttttaaaaaacatttcatagtgtctgtagttta 20513506  T
Q  297 aaaatg 302  Q
    ||||||    
T  20513505 aaaatg 20513500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 36392303 - 36392205
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||| ||||||| |||| ||||||||||||||       || |||||||||||||||||||||||||||| ||||||||| ||| || | ||||||||    
T  36392303 aaaatagattaagtgtgattgaagtattatatga-------tcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtctgtaattta 36392211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 11419302 - 11419196
Alignment:
Q  247 atgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccctccatcc 341  Q
    ||||||||||||| ||||||| |||||||||||||| || || |||||| |||||     |||||||||| ||||||||||| || ||||||||||||      
T  11419302 atgttaatatgtttacttttttaaaaacattttatattgtccttaatttgaaaatgaaaagtaaactctcctctctcttcccttcataaaccctccatgt 11419203  T
Q  342 aaacaca 348  Q
    |||||||    
T  11419202 aaacaca 11419196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 37607022 - 37607143
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||||||||||||||||||||||| ||||||||| ||| |  | ||| |||||||||     ||||||  || |||| ||| ||||| ||||||||    
T  37607022 tttatcatgttaatatgttaactttttataaaacatttcatagtatctgtattttaaaaatgaaaagtaaaccatcatctccctttccctcgtaaaccct 37607121  T
Q  336 ccatccaaacacatcgtaagga 357  Q
    ||||||||||||| | ||||||    
T  37607122 ccatccaaacacaccctaagga 37607143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 37779231 - 37779352
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||||||||||||||||||||||| ||||||||| ||| |  | ||| |||||||||     ||||||  || |||| ||| ||||| ||||||||    
T  37779231 tttatcatgttaatatgttaactttttataaaacatttcatagtatctgtagtttaaaaatgaaaagtaaaccatcatctccctttccctcgtaaaccct 37779330  T
Q  336 ccatccaaacacatcgtaagga 357  Q
    ||||||||||||| | ||||||    
T  37779331 ccatccaaacacaccctaagga 37779352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 348
Target Start/End: Original strand, 2183943 - 2184054
Alignment:
Q  242 ttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaact-----ctcttctctcttcccctcctaaaccctc 336  Q
    ||||||||||  ||| | || |||||||| |||||||||||||| |||||||||||| | | ||| |     ||||||| |||||||||| |||||||||    
T  2183943 ttatcatgttgttatttcaattttttaaataacattttataatgtccgtaatttaaagaggaaaaataagccctcttctatcttcccctcttaaaccctc 2184042  T
Q  337 catccaaacaca 348  Q
    ||||||||||||    
T  2184043 catccaaacaca 2184054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 8502949 - 8502890
Alignment:
Q  243 tatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||| ||||| |||||||||||||||||| |||| |||||| ||||||||||||||||    
T  8502949 tatcatattaatttgttaactttttaaaaaatatttcataatgtccgtaatttaaaaatg 8502890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 17024377 - 17024279
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    ||||||||||||||| ||| ||||||||||||||       || ||| ||||||||||||| |||||||||||| ||||||| |||||| | | ||||||    
T  17024377 aaaataaattaagtacgattgaagtattatatga-------tcgtttttcatgttaatatgataactttttaaagaacatttcataatgtctgcaattta 17024285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 32727893 - 32727833
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat 301  Q
    |||||||||||||||||||   ||||||||||| |||| ||||| ||||||||||||||||    
T  32727893 tttatcatgttaatatgttcgttttttaaaaaatatttcataatacccgtaatttaaaaat 32727833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 37551498 - 37551654
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    ||||||||||| || |||| ||||||||||||||       || |||||||||||||||||||||||||||| |||||||||   | || | ||| ||||    
T  37551498 aaaataaattatgtgtgattgaagtattatatga-------tcgtttatcatgttaatatgttaactttttataaaacattt--cagtgtctgtagttta 37551588  T
Q  297 aaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaacacatcgtaagga 357  Q
    |||||     ||||||  || |||| ||| ||||| ||||||||||||||||||||| | ||||||    
T  37551589 aaaatgaaaagtaaaccatcctctccctttccctcgtaaaccctccatccaaacacaccctaagga 37551654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 37654328 - 37654484
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    ||||||||||| || |||| ||||||||||||||       || |||||||||||||||||||||||||||| |||||||||   | || | ||| ||||    
T  37654328 aaaataaattatgtgtgattgaagtattatatga-------tcgtttatcatgttaatatgttaactttttataaaacattt--cagtgtctgtagttta 37654418  T
Q  297 aaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaacacatcgtaagga 357  Q
    |||||     ||||||  || |||| ||| ||||| ||||||||||||||||||||| | ||||||    
T  37654419 aaaatgaaaagtaaaccatcctctccctttccctcgtaaaccctccatccaaacacaccctaagga 37654484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 350
Target Start/End: Original strand, 43530 - 43652
Alignment:
Q  236 tatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattt-aaaaatg-----taaactctcttctctcttcccctcc-- 327  Q
    |||| ||||| |||||||||||||||||||| |||||| |||| ||| ||  |||||||| |||||||     |||||||||| || |||||||||||      
T  43530 tatcttttattatgttaatatgttaacttttcaaaaaatatttcatagtgttcgtaattttaaaaatgaaaagtaaactctctcctttcttcccctccta 43629  T
Q  328 taaaccctccatccaaacacatc 350  Q
    |||||| | ||||||||||||||    
T  43630 taaacctttcatccaaacacatc 43652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 348
Target Start/End: Original strand, 10476119 - 10476268
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| |||||||||||| |       || |||||||| ||||||||||   ||||| | ||| |||| ||| ||  |||||||||    
T  10476119 aaaataaattaagtgtgattgaagtattatataa-------tcgtttatcatcttaatatgtttttttttttataaatatttcatagtggtcgtaattta 10476211  T
Q  297 aaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||     |||||| |||  ||| |||||||||||||||||||||||||||||||    
T  10476212 aaaattataagtaaacactcccctcccttcccctcctaaaccctccatccaaacaca 10476268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 10650544 - 10650654
Alignment:
Q  243 tatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccctcc 337  Q
    ||||||| |||||||||||||||||| ||||||||| ||| |  ||||||||||||||      ||||||| ||| ||| |||||||||| ||||  ||     
T  10650544 tatcatggtaatatgttaactttttataaaacatttcatagtatccgtaatttaaaaacaaaaagtaaactttctcctcccttcccctcccaaactttca 10650643  T
Q  338 atccaaacaca 348  Q
    |||||||||||    
T  10650644 atccaaacaca 10650654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 40305747 - 40305674
Alignment:
Q  275 attttataatgcccgtaatttaaaaatgtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||| | |||||||||||| | |||||     ||| |||||||||||||||||||||||||||||||    
T  40305747 attttataatgtctgtaatttaaaaaagaaaactaagccctcccttcccctcctaaaccctccatccaaacaca 40305674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 299
Target Start/End: Complemental strand, 17780340 - 17780292
Alignment:
Q  252 aatatgttaactttttaaaaaa-cattttataatgcccgtaatttaaaa 299  Q
    |||||||||||||||||||||| |||||||||||  |||||||||||||    
T  17780340 aatatgttaactttttaaaaaaacattttataatatccgtaatttaaaa 17780292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 22023495 - 22023538
Alignment:
Q  241 tttatcatgttaatatgttaac-tttttaaaaaacattttataa 283  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  22023495 tttatcatgttaatatgttaacttttttaaaaaacatttcataa 22023538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 21581157 - 21581187
Alignment:
Q  318 cttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||||    
T  21581157 cttcccctcctaaaccctccatccaaacaca 21581187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 36392355 - 36392388
Alignment:
Q  314 ctctcttcccctcctaaaccctccatccaaacac 347  Q
    ||||||||||||||||||||||| ||||||||||    
T  36392355 ctctcttcccctcctaaaccctcaatccaaacac 36392388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 350
Target Start/End: Original strand, 2550562 - 2550594
Alignment:
Q  318 cttcccctcctaaaccctccatccaaacacatc 350  Q
    ||||||||||||||||||| |||||||||||||    
T  2550562 cttcccctcctaaaccctcaatccaaacacatc 2550594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Original strand, 22023571 - 22023599
Alignment:
Q  320 tcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||    
T  22023571 tcccctcctaaaccctccatccaaacaca 22023599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 29002248 - 29002220
Alignment:
Q  320 tcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||||||||||||||||||||||    
T  29002248 tcccctcctaaaccctccatccaaacaca 29002220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 347
Target Start/End: Complemental strand, 19278220 - 19278039
Alignment:
Q  168 aaattacggagtatataacatgnnnnnnnaaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaacttttt 267  Q
    |||||||||| |||||||||||       |||||||||| ||| |||| ||||||| |||||| | |||||||| | | || |  |||||| ||||||||    
T  19278220 aaattacggactatataacatgtttttctaaaataaatttagtctgattgaagtatcatatgatcgtttatcatgt-taatat--atatgtcaacttttt 19278124  T
Q  268 aaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacac 347  Q
    |||||| |||||||| || | ||||||||||||||     |||||||||| ||  ||||||||||||||||||||||||||||||    
T  19278123 aaaaaatattttatagtgtcagtaatttaaaaatgaaaagtaaactctctccttccttcccctcctaaaccctccatccaaacac 19278039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 4097665 - 4097568
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       || |||||||||||||||||||||||||||||||||||||| | | || ||||||||||    
T  4097665 aaaataaattaagtgtgattgaagtattatatga-------tcgtttatcatgttaatatgttaactttttaaaaaacatttcaaagtgtccgtaattta 4097573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 1390443 - 1390559
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaa 331  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||| || | |||||||||||||     |||||  | || |||  |||||||||||||    
T  1390443 atcatttatcatgttaatatgttaactttttaaaaaatatttcatagtgtcagtaatttaaaaatgaaaagtaaaacccctcctccattcccctcctaaa 1390542  T
Q  332 ccctccatccaaacaca 348  Q
    |||| ||||||||||||    
T  1390543 cccttcatccaaacaca 1390559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 10818340 - 10818456
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaa 331  Q
    |||||||||||||||||||||||||  ||||||||||||||| ||| || |||||||||||||||     |||||| |||  ||| || |||||||||||    
T  10818340 atcatttatcatgttaatatgttaatattttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctccctacccctcctaaa 10818439  T
Q  332 ccctccatccaaacaca 348  Q
    | ||| |||||||||||    
T  10818440 ctctcaatccaaacaca 10818456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 34176463 - 34176574
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    ||||| |||||||||||||||||||  |||||| |||| ||| || ||||||||||||||||     ||||||||| |||||||| ||||| ||||||||    
T  34176463 tttattatgttaatatgttaactttaaaaaaaatatttcatagtgtccgtaatttaaaaatgaaaactaaactctcatctctctt-ccctcataaaccct 34176561  T
Q  336 ccatccaaacaca 348  Q
    |||||||||||||    
T  34176562 ccatccaaacaca 34176574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 33041589 - 33041650
Alignment:
Q  240 atttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat 301  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||||||||    
T  33041589 atttatcatgttaatatgttaactttttaaaaaacatttcatagtatccgtaatttaaaaat 33041650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 9719147 - 9719035
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||  ||||||||||||||||||||||||||||  ||| || ||||||||||||||||     ||||  |||  ||| ||||||||||||||||||    
T  9719147 tttatcaaattaatatgttaactttttaaaaaacattccatagtgtccgtaatttaaaaatgaaaaataaatcctcccctcccttcccctcctaaaccct 9719048  T
Q  336 ccatccaaacaca 348  Q
    | |||||||||||    
T  9719047 caatccaaacaca 9719035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 9721254 - 9721142
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccct 335  Q
    |||||||  ||||||||||||||||||||||||||||  ||| || ||||||||||||||||     ||||| |||  ||| |||||||||||||||| |    
T  9721254 tttatcaaattaatatgttaactttttaaaaaacattccatagtgtccgtaatttaaaaatgaaaaataaaccctcccctcccttcccctcctaaacctt 9721155  T
Q  336 ccatccaaacaca 348  Q
    | |||||||||||    
T  9721154 caatccaaacaca 9721142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 348
Target Start/End: Original strand, 14515593 - 14515711
Alignment:
Q  235 ttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctccta 329  Q
    ||||||||||||||||| ||||||||||| || |||||| |||||||| ||  | |||||||||||||     ||||| |||   |  ||||||||||||    
T  14515593 ttatcatttatcatgttcatatgttaactcttcaaaaaatattttatagtgttcataatttaaaaatgaaatctaaaccctccctttccttcccctccta 14515692  T
Q  330 aaccctccatccaaacaca 348  Q
    |||||||||||||||||||    
T  14515693 aaccctccatccaaacaca 14515711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 348
Target Start/End: Original strand, 14548756 - 14548842
Alignment:
Q  264 ttttaaaa-aacattttataatgcccgtaatttaaaaat-gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||| ||||||||||| || ||||||||||||||  ||||||||||||||||||| || || ||||||||| |||||||||||    
T  14548756 ttttaaaataacattttatattgtccgtaatttaaaaaaagtaaactctcttctctctttccatcgtaaaccctcaatccaaacaca 14548842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 21606960 - 21606899
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||||||||||||||||||| ||||||||| ||| |  ||||||||||||||||    
T  21606960 tttatcatgttaatatgttaactttttataaaacatttcatagtttccgtaatttaaaaatg 21606899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 31849238 - 31849299
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||| ||||||||||||| ||||||||| |||||||||| || ||||||||||||||||    
T  31849238 tttatcacgttaatatgttaattttttaaaagacattttatagtgtccgtaatttaaaaatg 31849299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 33236079 - 33236139
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||||||    
T  33236079 tttatcatgttaatatgttaactttttaaaaaa-atttcatagtgtccgtaatttaaaaatg 33236139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 30487421 - 30487310
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatgtaaact-----ctcttctctcttcccctcctaaaccct 335  Q
    ||||||||||||||||||| ||||||||||| |||||| ||| || || |||||||| |||| ||| |     |||  ||| ||||||||||||||||||    
T  30487421 tttatcatgttaatatgttgactttttaaaagacatttcatactgtcc-taatttaacaatgaaaagtgaaccctcccctcccttcccctcctaaaccct 30487323  T
Q  336 ccatccaaacaca 348  Q
    |||||||||||||    
T  30487322 ccatccaaacaca 30487310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 5585418 - 5585305
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta------aaaatgtaaactctcttctctcttcccctcctaaaccc 334  Q
    ||||| |||||||||||||| ||||||||||||||||| ||| ||  |||||||||      |||| |||||||||    |  |||||||||||||||||    
T  5585418 tttattatgttaatatgttacctttttaaaaaacatttcatagtgttcgtaatttaaaaaagaaaaagtaaactcttccattccttcccctcctaaaccc 5585319  T
Q  335 tccatccaaacaca 348  Q
    ||||||||||||||    
T  5585318 tccatccaaacaca 5585305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 1300748 - 1300809
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||| |||||||||||||||||||| |||| |||| ||| || ||||||||||||||||    
T  1300748 tttatcaggttaatatgttaactttttataaaatatttcatattgtccgtaatttaaaaatg 1300809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 21607034 - 21607084
Alignment:
Q  298 aaatgtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||  || |||||||||||||||||||||||| |||||||||||    
T  21607034 aaatgtaaacattcatctctcttcccctcctaaaccctcaatccaaacaca 21607084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 665961 - 665845
Alignment:
Q  237 atcatttatcatgttaatatgtt-aactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaa 330  Q
    ||||||||||||||||||||||| || ||||||||| |||||| |||||   | |||||||||||||     | ||| |||  ||| |||||||||||||    
T  665961 atcatttatcatgttaatatgttaaaatttttaaaagacatttcataatattcataatttaaaaatgaaaaatgaaccctcccctcacttcccctcctaa 665862  T
Q  331 accctccatccaaacaca 348  Q
    ||||| ||||||||||||    
T  665861 accct-catccaaacaca 665845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 1395760 - 1395825
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||||||||||| ||||||||||| ||||||||||||||| || | ||   ||||||||||||||    
T  1395760 atcatttatcatgctaatatgttaattttttaaaaaacattctacagtgttagtaatttaaaaatg 1395825  T

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Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 2900038 - 2900099
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| || |  |||||||||||||    
T  2900038 tttatcatgttaatatgttaacttcttataaaacatttcatagtgtctataatttaaaaatg 2900099  T

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Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 4097355 - 4097239
Alignment:
Q  237 atcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaa 331  Q
    |||||||||||||||  ||  | || ||| ||||||| ||||||||||| |||| ||| |||||      |||||||||| |||  ||||||||||||||    
T  4097355 atcatttatcatgttgttaattcaattttctaaaaaatattttataatgtccgtgattcaaaaaataaaagtaaactctcatcttccttcccctcctaaa 4097256  T
Q  332 ccctccatccaaacaca 348  Q
    ||||| |||||||||||    
T  4097255 ccctcaatccaaacaca 4097239  T

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Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 9298625 - 9298672
Alignment:
Q  253 atatgttaactttttaaaa-aacattttataatgcccgtaatttaaaa 299  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||||    
T  9298625 atatgttaactttttaaaaaaacatttcataatgtccgtaatttaaaa 9298672  T

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Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 302
Target Start/End: Complemental strand, 10348920 - 10348853
Alignment:
Q  235 ttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg 302  Q
    ||||| |||||| | |||||||||||||||||||||| | |||| ||| |  ||||||||||||||||    
T  10348920 ttatcgtttatcgtattaatatgttaactttttaaaagatatttcatattatccgtaatttaaaaatg 10348853  T

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Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 13583810 - 13583884
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattt 278  Q
    |||||||||||||| |||| ||| ||||||||||       |||||||| ||||||| ||||||| ||||||||||||||||    
T  13583810 aaaataaattaagtgtgattgaaatattatatga-------tcatttattatgttaacatgttaattttttaaaaaacattt 13583884  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 30850099 - 30850152
Alignment:
Q  295 taaaaatgtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||| ||||||||||   |||||| ||||||||||||||| |||||||||||    
T  30850099 taaaaaagtaaactctcccttctctttccctcctaaaccctcaatccaaacaca 30850152  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 348
Target Start/End: Complemental strand, 1390355 - 1390323
Alignment:
Q  316 ctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||| |||||||||||||||||||||    
T  1390355 ctcttcccctcataaaccctccatccaaacaca 1390323  T

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Target: scaffold0171 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 245 - 348
Target Start/End: Original strand, 16082 - 16190
Alignment:
Q  245 tcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccat 339  Q
    |||| ||||||||||||||||||||||||||||| |||||  ||||||||||||||||     |||||||| | ||| |||||||||||||| |||| ||    
T  16082 tcatattaatatgttaactttttaaaaaacatttcataatatccgtaatttaaaaatgaaaaataaactctttcctcccttcccctcctaaatcctctat 16181  T
Q  340 ccaaacaca 348  Q
    | |||||||    
T  16182 cgaaacaca 16190  T

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Target: scaffold0262 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 346
Target Start/End: Complemental strand, 16449 - 16302
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaattta 296  Q
    |||||||||||||| |||| ||||||||||||||       |  |||||||||||||||||||||| ||||| ||||||||| ||| ||  | |||||||    
T  16449 aaaataaattaagtgtgattgaagtattatatga-------ttgtttatcatgttaatatgttaacgttttataaaacatttcatagtgttcataattta 16357  T
Q  297 aaaat-----gtaaactctcttctctcttcccctcctaaaccctccatccaaaca 346  Q
    |||||     |||||| |||  |||  || |||||||||||||||||||||||||    
T  16356 aaaatgaaaagtaaaccctcccctccttttccctcctaaaccctccatccaaaca 16302  T

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Target: scaffold0026 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 1222 - 1176
Alignment:
Q  302 gtaaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||||    
T  1222 gtaaactctcccctctcttcccctcctaaaccctcaatccaaacaca 1176  T

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Target: scaffold0026; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 1264 - 1361
Alignment:
Q  202 aaattaagtatgatagaagtattatatgaccttttatcatttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat 301  Q
    |||||||||||||  ||||||||||||    | | ||| |||||||||  ||||||||||||||||||||||||||| ||| ||  | ||||||||||||    
T  1264 aaattaagtatgactgaagtattatata---tatgatcgtttatcatgacaatatgttaactttttaaaaaacatttcatagtgttcataatttaaaaat 1360  T

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Target: scaffold0294 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 15391 - 15502
Alignment:
Q  241 tttatcatgttaatatgttaactttttaaaaaacattttataatgcccgtaatttaaaaat-----gtaaactctcttctctcttcccctcctaaaccct 335  Q
    ||||||| ||||||||||| || |||||||||||| || ||| || |||||||||||||||     ||| |  ||| | || |||||| |||||||||||    
T  15391 tttatcacgttaatatgttgaccttttaaaaaaca-ttcatagtgtccgtaatttaaaaataaaaagtagatcctcatttcccttcccttcctaaaccct 15489  T
Q  336 ccatccaaacaca 348  Q
    |||||||||||||    
T  15490 ccatccaaacaca 15502  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 348
Target Start/End: Original strand, 242366 - 242456
Alignment:
Q  263 tttttaaaaaacattttataatgcccgtaatttaaaaatg-----taaactctcttctctcttcccctcctaaaccctccatccaaacaca 348  Q
    |||||||||| |||||||||||| |||||||||||||| |     ||||| |||  ||| ||||||||  |||||| ||||||||||||||    
T  242366 tttttaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaaaccctcccctcccttccccttataaaccatccatccaaacaca 242456  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 81564 - 81520
Alignment:
Q  197 aaaataaattaagtatgatagaagtattatatgaccttttatcat 241  Q
    ||||||||| ||||||||| |||||||||||||| | ||||||||    
T  81564 aaaataaatcaagtatgattgaagtattatatgatcatttatcat 81520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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