View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11666_low_8 (Length: 414)
Name: NF11666_low_8
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11666_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 42293528 - 42293129
Alignment:
| Q |
1 |
ttgtgaagacagaacagctcgatgagctcttatgcttccctcggaattgacattgattgttatgtctgtatagatatcttctcttatcattcgacctagg |
100 |
Q |
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| T |
42293528 |
ttgtgaagacagaacagctcgatgagctcttatgtttccctcggaattgacgttgattgttatgtctgtatagatatcttctcttatcattcgacctagg |
42293429 |
T |
|
| Q |
101 |
gattcaagggccgctgcattttgtctctgctgcataaatccgctaggccaaatagagccagcttccccgccctttattcaaatcaagcaaaattttaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42293428 |
gattcaagggccgctgcattttgtctctgctgcataaatccgctaggccaaatagagccagcttccccaccctttattcaaatcaagcaaaattttaaat |
42293329 |
T |
|
| Q |
201 |
taggtgaagaaattgaagtcaataaccctcatatcaacactaagtaaaataaaaagtaaatgg---nnnnnnnnttgtatcaatgtttacatatattatt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42293328 |
taggtgaagaaattgaagtcaataaccctcatatcaacactaaacaaaataaaaagtaaatggaaaaaaaaaaattgtatcaatgtttacatatattatt |
42293229 |
T |
|
| Q |
298 |
caaaaccttaatttggatatattatatacttacttacctttggacatgtagttttcaaatccagaaactcaatgtcaattatgaattttccaggtaatgg |
397 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42293228 |
caataccttaatttggatatattatatacttacttacctttggacatgtagttttcaaatccagaaactcaatgtcaattatgaattttccaggtaatgg |
42293129 |
T |
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