View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11666_low_9 (Length: 392)
Name: NF11666_low_9
Description: NF11666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11666_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 377
Target Start/End: Original strand, 8164427 - 8164778
Alignment:
| Q |
24 |
gagataaactattatcaattaaagtgatattaataattattttagaaatatttttaagtagacttaaacgttatatacatgttacgtagcagacaaatat |
123 |
Q |
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| T |
8164427 |
gagataaactattatcaattaaagtgatattaataattattttagaaatatttttaagtagacttaaacgttatatacatgttacgtaccagacaaatat |
8164526 |
T |
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| Q |
124 |
taaaatttctccctaggaaaatgtcnnnnnnnntaattaggcaaatgttaaaaggttatatacacgtccttatgtaaatgttaaattttgtaacgggaat |
223 |
Q |
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| T |
8164527 |
taaaatttctccctaggaaaatgtcgaaataaataattaggcaaatgttaaa-ggttatatacacgtccttatgtaaatgttaaattttgtgatggaaat |
8164625 |
T |
|
| Q |
224 |
ttgtgcgaagtgcaatccaattcgcataagtaccacgaattggtacggaggtaccaatttgcggttcgcagcatgtcaagataattatgtgactataata |
323 |
Q |
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| T |
8164626 |
ttgtgcgaagtgcaatccaattcgcataagtaccacgaactggtacggaggtatcaatttgtggttcgcagcatgtcaagataattatgtgactataata |
8164725 |
T |
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| Q |
324 |
tgagcaagatgggttgaggctctctgatgaaaaatttctcatttttaggatcat |
377 |
Q |
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| T |
8164726 |
tgagcaagatgggctgaggctctgtgatg-aaaatttctcaattttaggatcat |
8164778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 10696063 - 10695984
Alignment:
| Q |
240 |
ccaattcgcataagtaccacgaattggtacggaggtaccaatttgcggttcgcagcatgtcaagataattatgtgactat |
319 |
Q |
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| T |
10696063 |
ccaattcgcaaaagtactacgaaccggtacataagtaccaattcgcagttcgcatcatgttaagagaattatgtgactat |
10695984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 29849066 - 29849137
Alignment:
| Q |
240 |
ccaattcgcataagtaccacgaattggtacggaggtaccaatttgcggttcgcagcatgtcaagataattat |
311 |
Q |
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| T |
29849066 |
ccaattcgcaaaagtaccacgaactggtacgcaagtaccaattcgcagttcgcaacatgtcaagagaattat |
29849137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 319
Target Start/End: Original strand, 32723081 - 32723135
Alignment:
| Q |
265 |
ggtacggaggtaccaatttgcggttcgcagcatgtcaagataattatgtgactat |
319 |
Q |
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| T |
32723081 |
ggtacgtaagtatcaatttgaggttcgaagcatgccaagataattatgtgactat |
32723135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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