View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11667_high_1 (Length: 700)

Name: NF11667_high_1
Description: NF11667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11667_high_1
NF11667_high_1
[»] chr5 (16 HSPs)
chr5 (282-684)||(11729281-11729686)
chr5 (9-217)||(11729008-11729216)
chr5 (425-487)||(11753326-11753388)
chr5 (43-161)||(31636133-31636249)
chr5 (86-161)||(33667210-33667285)
chr5 (111-166)||(38578729-38578784)
chr5 (9-161)||(10082952-10083102)
chr5 (107-166)||(42199301-42199360)
chr5 (75-161)||(11752981-11753067)
chr5 (627-684)||(11753549-11753605)
chr5 (9-151)||(11002646-11002785)
chr5 (103-142)||(17213088-17213127)
chr5 (98-161)||(36123405-36123467)
chr5 (103-161)||(1525655-1525713)
chr5 (107-143)||(12577079-12577115)
chr5 (23-142)||(32516489-32516606)
[»] chr6 (8 HSPs)
chr6 (9-161)||(33083976-33084127)
chr6 (75-133)||(6641650-6641708)
chr6 (23-72)||(9568591-9568640)
chr6 (86-151)||(10617455-10617519)
chr6 (46-148)||(21870299-21870397)
chr6 (107-166)||(9593914-9593973)
chr6 (108-156)||(7513609-7513657)
chr6 (9-125)||(28085294-28085409)
[»] chr7 (19 HSPs)
chr7 (23-156)||(28020895-28021028)
chr7 (47-166)||(19262641-19262758)
chr7 (9-156)||(36514425-36514569)
chr7 (23-166)||(39811888-39812031)
chr7 (49-149)||(40830183-40830280)
chr7 (111-166)||(18605354-18605409)
chr7 (111-166)||(18637581-18637636)
chr7 (111-166)||(18651015-18651070)
chr7 (86-156)||(45558356-45558426)
chr7 (103-166)||(7220755-7220818)
chr7 (103-166)||(30914676-30914739)
chr7 (13-167)||(47848596-47848749)
chr7 (12-161)||(34869341-34869489)
chr7 (87-156)||(38920789-38920858)
chr7 (77-150)||(46989888-46989961)
chr7 (103-143)||(25826701-25826741)
chr7 (103-151)||(28858055-28858103)
chr7 (103-143)||(29229859-29229899)
chr7 (23-143)||(48736130-48736250)
[»] chr1 (12 HSPs)
chr1 (9-143)||(26016355-26016488)
chr1 (44-166)||(43423671-43423793)
chr1 (23-134)||(18793228-18793339)
chr1 (56-166)||(39422251-39422359)
chr1 (9-161)||(9509236-9509387)
chr1 (84-164)||(15577413-15577493)
chr1 (85-156)||(37263324-37263395)
chr1 (107-165)||(23791853-23791911)
chr1 (86-156)||(51812519-51812589)
chr1 (86-163)||(52073673-52073751)
chr1 (90-166)||(13827925-13828001)
chr1 (108-156)||(38868898-38868946)
[»] chr8 (13 HSPs)
chr8 (24-161)||(32043522-32043659)
chr8 (14-143)||(39051065-39051193)
chr8 (9-157)||(39953481-39953628)
chr8 (11-156)||(13171867-13172011)
chr8 (44-156)||(9695583-9695695)
chr8 (107-143)||(30456443-30456479)
chr8 (97-165)||(43732561-43732629)
chr8 (86-143)||(33666730-33666787)
chr8 (86-151)||(34196066-34196131)
chr8 (101-161)||(1549590-1549650)
chr8 (21-125)||(30113446-30113550)
chr8 (86-142)||(38689532-38689588)
chr8 (9-125)||(39946775-39946890)
[»] chr4 (16 HSPs)
chr4 (56-165)||(46371988-46372097)
chr4 (77-167)||(54470192-54470282)
chr4 (86-161)||(49738817-49738892)
chr4 (56-156)||(36557248-36557347)
chr4 (43-161)||(25257794-25257910)
chr4 (55-161)||(934649-934754)
chr4 (107-161)||(42285913-42285967)
chr4 (30-165)||(51252670-51252803)
chr4 (59-142)||(10775654-10775737)
chr4 (86-161)||(35555860-35555935)
chr4 (86-165)||(44360081-44360159)
chr4 (107-161)||(31897641-31897695)
chr4 (103-165)||(46715581-46715643)
chr4 (107-156)||(31459045-31459094)
chr4 (9-125)||(12494668-12494783)
chr4 (86-166)||(41192830-41192910)
[»] chr3 (13 HSPs)
chr3 (56-161)||(3987011-3987116)
chr3 (86-142)||(39535672-39535728)
chr3 (107-166)||(21200563-21200622)
chr3 (43-125)||(344960-345042)
chr3 (84-150)||(37351399-37351465)
chr3 (9-151)||(54128296-54128437)
chr3 (108-165)||(11581460-11581517)
chr3 (9-166)||(52138718-52138874)
chr3 (500-544)||(634991-635035)
chr3 (86-161)||(50960846-50960921)
chr3 (86-156)||(47788895-47788965)
chr3 (103-143)||(29374945-29374985)
chr3 (86-161)||(31453151-31453227)
[»] chr2 (9 HSPs)
chr2 (86-156)||(18188774-18188844)
chr2 (13-161)||(38429806-38429953)
chr2 (105-161)||(41779521-41779577)
chr2 (23-143)||(4598793-4598915)
chr2 (108-166)||(13240953-13241011)
chr2 (13-71)||(45077670-45077727)
chr2 (21-161)||(23714474-23714611)
chr2 (21-161)||(24102146-24102283)
chr2 (9-125)||(36183369-36183484)
[»] scaffold0325 (1 HSPs)
scaffold0325 (103-156)||(11809-11862)
[»] scaffold0036 (1 HSPs)
scaffold0036 (23-72)||(4574-4623)


Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 282 - 684
Target Start/End: Original strand, 11729281 - 11729686
Alignment:
Q  282 ttggtatttgatggcgtcatttaatttatatagagaaacctcatttagtggatatagtacttaattaattgttgtgggttcctagaacaatagttgcttg 381  Q
    ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11729281 ttggtatttgatggcgtcatttaatctatatagacaaatctcatttagtggatatagtacttaattaattgttgtgggttcctagaacaatagttgcttg 11729380  T
Q  382 atcacaaccccaaacaaaaatgannnnnnnnn-ggtgtacaaacaaaaatgatttgaacacacacatataatacatgtcatttaaatatttaaaaaatta 480  Q
    || ||||||||||||||||||||          |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11729381 attacaaccccaaacaaaaatgattttttttttggtgtacaaacaaaaatgatttgaacacgcacatataatacatgtcatttaaatatttaaaaaatta 11729480  T
Q  481 tgcactaannnnnnngatcgatagacaaaatgataataatcattaaaaactcagacacacaagttggggaaaccataatcacgatattcgatctaacaa- 579  Q
    ||||||||       | |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||     
T  11729481 tgcactaatttttttggtcgatagataaaatgataataatcattaaaaattcagacacacaagttggggaaaccatgatcacgacattcgatctaacaaa 11729580  T
Q  580 -tttttgtattatttcttttacctttttgcatttacgtgtgtgtctaaaccattttcagctgtagttgtaatcaagaattgttgctcaagtgttctagat 678  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11729581 ttttttgtattatttcttttacctttttgcatttacgtgtgtgtctaaaccattttcagctgtagttgtaatcaagaattgttgctcaagtgttctagat 11729680  T
Q  679 cttatt 684  Q
    ||||||    
T  11729681 cttatt 11729686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 11729008 - 11729216
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11729008 agcagagatgaggaatgttgcgttagatgtatgataagactagacatgatagaattataaatgattatattaaaaatagagttggggcaacacttattgt 11729107  T
Q  109 agaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgtaagttaaattgtaaaggtctgatgaagggtagttgcattatta 208  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11729108 agaaaagatggtagaaactcaacttatgtggtttgagcatgtaaagaggagacatgtaagttaaattgtaaaggtctgatgaagggtagttgcattatta 11729207  T
Q  209 gaggcacat 217  Q
    |||||||||    
T  11729208 gaggcacat 11729216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 425 - 487
Target Start/End: Original strand, 11753326 - 11753388
Alignment:
Q  425 aaaaatgatttgaacacacacatataatacatgtcatttaaatatttaaaaaattatgcacta 487  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||    
T  11753326 aaaaatgatttgaacacgcacatacaatacatgtcatttaaatatttcaaaaattatgcacta 11753388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 31636249 - 31636133
Alignment:
Q  43 taagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggttt 142  Q
    |||||||||||| |||||||||||||||||    |||||| | ||  |||||| | ||| ||| ||||||||||||||||||||| |||||| |||||||    
T  31636249 taagactagactggatagaattataaatgacagcattagagaaag--ttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggttt 31636152  T
Q  143 gagcatgtaaagaggagac 161  Q
    | ||||||| |||| ||||    
T  31636151 gggcatgtagagagaagac 31636133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Original strand, 33667210 - 33667285
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||||||||| | ||| ||| ||||||||||||||||||||| |||||| |||||||| ||||||| |||| ||||    
T  33667210 agagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagaagac 33667285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 38578784 - 38578729
Alignment:
Q  111 aaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||    
T  38578784 aaaagatggtagaaactaaacttaggtggtttgagcatgtaaagagaagacatgta 38578729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 10083102 - 10082952
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    ||||| |||||||| |||||| || ||||| || |||||||||||  |||||||||| ||||||  | |||||  | ||  |||||| | ||| ||| ||    
T  10083102 agcagggatgagga-tgttgcttt-gatgtgtggtaagactagacgggatagaattagaaatgagaacattagggagagcattggggtatcacctatagt 10083005  T
Q  109 agaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    ||||||||||||||||||| |||||| |||||||  ||||||| |||| ||||    
T  10083004 agaaaagatggtagaaactagacttaagtggtttcggcatgtagagagaagac 10082952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 42199301 - 42199360
Alignment:
Q  107 gtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    |||||||||||||| |||||| |||||| |||||||| ||||||| |||| |||||||||    
T  42199301 gtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgta 42199360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 11752981 - 11753067
Alignment:
Q  75 atattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||||||||| ||| |  ||| ||||||| |||||||||||||| |||||| | ||||||  |||||||| |||||||| |||||||    
T  11752981 atattagaaacagattcagggtaacactttttgtagaaaagatgctagaaatttgacttagttggtttgaacatgtaaataggagac 11753067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 684
Target Start/End: Original strand, 11753549 - 11753605
Alignment:
Q  627 accattttcagctgtagttgtaatcaagaattgttgctcaagtgttctagatcttatt 684  Q
    |||||||||| ||||| || ||||||||||||| ||||||||||||||| ||||||||    
T  11753549 accattttcatctgtaattataatcaagaattg-tgctcaagtgttctaaatcttatt 11753605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 11002785 - 11002646
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||||| ||||||| | ||||| || |||||| |||   |||||||||| ||||||  | |||||| |  ||||| ||| | ||| ||  ||    
T  11002785 agcagagatgagga-tgttgcgctggatgtgtggtaagacgagatgggatagaattagaaatgacaacattagaga--gagttcgggtagcacctacagt 11002689  T
Q  109 agaaaagatggtagaaactcgacttatgtggtttgagcatgta 151  Q
    |||||| |||||||||||| |||||| |||||||| |||||||    
T  11002688 agaaaacatggtagaaactagacttaggtggtttgggcatgta 11002646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 17213088 - 17213127
Alignment:
Q  103 tattgtagaaaagatggtagaaactcgacttatgtggttt 142  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  17213088 tattgtagaaaagattgtagaaactcgacttaggtggttt 17213127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 36123467 - 36123405
Alignment:
Q  98 acacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||| |||||||||||| ||||||||||||||||||| ||| |||| ||||||| |||| ||||    
T  36123467 acacctattgtagaaaa-atggtagaaactcgacttaggtgatttgggcatgtagagagaagac 36123405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 1525655 - 1525713
Alignment:
Q  103 tattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    ||||||||||||||||||||||||| |||||| |||| |||  |||||| |||| ||||    
T  1525655 tattgtagaaaagatggtagaaactagacttaggtggcttggacatgtagagagaagac 1525713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 12577115 - 12577079
Alignment:
Q  107 gtagaaaagatggtagaaactcgacttatgtggtttg 143  Q
    |||||||||||||| |||||| |||||||||||||||    
T  12577115 gtagaaaagatggtggaaactagacttatgtggtttg 12577079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 32516489 - 32516606
Alignment:
Q  23 atgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtag 122  Q
    |||||| ||| ||||| || |||||||||||  |||||| ||| ||||||  | |||||| |  ||||||| | ||||||||| |||||||||||||| |    
T  32516489 atgttgtgttggatgtgtggtaagactagacaggatagacttagaaatgacaacattagaga--gagttggagtaacacttatagtagaaaagatggtgg 32516586  T
Q  123 aaactcgacttatgtggttt 142  Q
    ||| | | |||| |||||||    
T  32516587 aaaataggcttaggtggttt 32516606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 33083976 - 33084127
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||| ||||||| || |||||| ||||| || ||||||||||   |||||||||| ||||||  |||||||| | |||||||||| | ||| ||| ||    
T  33083976 agcagaaatgagga-tgctgcgttggatgtgtggtaagactagatgggatagaattagaaatgacgatattagagagagagttggggtagcacctatggt 33084074  T
Q  109 agaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    ||||||||||||||||||| |||||| |||||||| | ||||| |||| ||||    
T  33084075 agaaaagatggtagaaactagacttaggtggtttgggaatgtagagagaagac 33084127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 6641708 - 6641650
Alignment:
Q  75 atattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgactt 133  Q
    |||||||| |||||||||||| | ||| ||| ||||||||||||||||||||| |||||    
T  6641708 atattagagatagagttggggtatcacctatagtagaaaagatggtagaaactagactt 6641650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 9568591 - 9568640
Alignment:
Q  23 atgttgcgttagatgtatgataagactagacttgatagaattataaatga 72  Q
    |||||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  9568591 atgttgcgttggatgtgtggtaagactagacatgatagaattataaatga 9568640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 10617519 - 10617455
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgta 151  Q
    |||||||||| | ||||||| |||||||||| | |||||||| |||||| ||||||||||||||||    
T  10617519 agagttggggtagcacttatagtagaaaagacg-tagaaactagacttaggtggtttgagcatgta 10617455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 21870397 - 21870299
Alignment:
Q  46 gactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgag 145  Q
    |||||||| ||||||||||| |||||   ||||||||    ||||||||| | ||| | | ||||||||||||||||||||||| |||| |||||||| |    
T  21870397 gactagacatgatagaattagaaatgtcaatattaga----gagttggggtagcacctgtagtagaaaagatggtagaaactcggcttaggtggtttggg 21870302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 9593973 - 9593914
Alignment:
Q  107 gtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    ||||||||||||||||||| | | |||| |||||||| ||||||| |||| |||||||||    
T  9593973 gtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacatgta 9593914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 7513657 - 7513609
Alignment:
Q  108 tagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    ||||||||||||||||| || |||||| |||||||| ||||| ||||||    
T  7513657 tagaaaagatggtagaacctagacttaggtggtttgggcatgcaaagag 7513609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 28085294 - 28085409
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||||| ||||||||| ||||  || ||||||||||| |||||| ||||  |||||    |||||| | ||||| |||| | ||| ||| ||    
T  28085294 agcagagatgagga-tgttgcgttggatgagtggtaagactagacatgataggattacgaatgacaccattagagagagagtgggggtagcacctatagt 28085392  T
Q  109 agaaaagatggtagaaa 125  Q
    ||||||| |||||||||    
T  28085393 agaaaagttggtagaaa 28085409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 28020895 - 28021028
Alignment:
Q  23 atgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtag 122  Q
    ||||||| |||||||| |||||||||| ||| |||||  |||  ||||||| | |||||| | |||||||||| | ||||||| |||||||||||||| |    
T  28020895 atgttgcattagatgtgtgataagactggacatgatatgattcgaaatgataacattagagaaagagttggggtagcacttatcgtagaaaagatggtgg 28020994  T
Q  123 aaactcgacttatgtggtttgagcatgtaaagag 156  Q
    ||||| | |||| |||||||| ||||||| ||||    
T  28020995 aaacttggcttaggtggtttgggcatgtagagag 28021028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 19262758 - 19262641
Alignment:
Q  47 actagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagc 146  Q
    ||||||| ||||||| ||| ||||||  |||||||| |  ||||||||| | ||| ||||||||||||||||||||||||| | |||| |||||||||||    
T  19262758 actagacatgatagagttagaaatgacaatattagaga--gagttggggtagcacctattgtagaaaagatggtagaaacttggcttaggtggtttgagc 19262661  T
Q  147 atgtaaagaggagacatgta 166  Q
    ||||| |||| |||| ||||    
T  19262660 atgtagagagaagacctgta 19262641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 36514569 - 36514425
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||||| ||||||||| ||||| || |||||||| ||  |||||||||| ||| ||  | |||||| |  ||||||||| | ||| ||| ||    
T  36514569 agcagagatgagga-tgttgcgttggatgtgtggtaagactaaacgggatagaattagaaaggacaacattagaga--gagttggggtagcacctatagt 36514473  T
Q  109 agaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    ||||||||||||||||||| |||||| |||||||| ||||||| ||||    
T  36514472 agaaaagatggtagaaactagacttaggtggtttgggcatgtagagag 36514425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 39811888 - 39812031
Alignment:
Q  23 atgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtag 122  Q
    ||||||| || ||||| || ||||||||||| |||||| |||| ||||||  | |||||| | |||||||||||| ||| |||  ||||||| |||||      
T  39811888 atgttgctttggatgtgtggtaagactagacgtgataggattagaaatgacaacattagagagagagttggggcagcacctatcatagaaaaaatggtga 39811987  T
Q  123 aaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    ||||||| |||| || ||||| ||||||| |||| ||| |||||    
T  39811988 aaactcggcttaggtagtttgggcatgtagagagaagagatgta 39812031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 40830183 - 40830280
Alignment:
Q  49 tagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcat 148  Q
    ||||| ||||||||||| ||||||  ||||||||||  ||||||||  | ||| ||||| |||||||||||||||||||| ||||| |||||||| ||||    
T  40830183 tagacatgatagaattagaaatgacaatattagaaa--gagttgggt-agcacctattgaagaaaagatggtagaaactctacttaggtggtttgggcat 40830279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 18605409 - 18605354
Alignment:
Q  111 aaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    |||||||||||||||||  ||||| |||||||||||||||| |||| |||||||||    
T  18605409 aaaagatggtagaaactaaacttaggtggtttgagcatgtagagagaagacatgta 18605354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 18637581 - 18637636
Alignment:
Q  111 aaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    |||||||||||||||||  ||||| |||||||||||||||| |||| |||||||||    
T  18637581 aaaagatggtagaaactaaacttaggtggtttgagcatgtagagagaagacatgta 18637636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 18651015 - 18651070
Alignment:
Q  111 aaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    |||||||||||||||||  ||||| |||||||||||||||| |||| |||||||||    
T  18651015 aaaagatggtagaaactaaacttaggtggtttgagcatgtagagagaagacatgta 18651070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 45558356 - 45558426
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    |||||||||| | ||| ||| ||||||||| |||||||||||||||||| |||||||| ||| ||| ||||    
T  45558356 agagttggggtaccacctatagtagaaaagttggtagaaactcgacttaggtggtttgtgcacgtagagag 45558426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 7220755 - 7220818
Alignment:
Q  103 tattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    |||||||||||||||| |||||||| | |||| |||||||| ||||||| |||| |||| ||||    
T  7220755 tattgtagaaaagatgatagaaacttggcttaggtggtttgggcatgtagagagaagacgtgta 7220818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 30914739 - 30914676
Alignment:
Q  103 tattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    |||||||||||| |||||||||||||| |||  |||||||| |||||||| ||| |||| ||||    
T  30914739 tattgtagaaaaaatggtagaaactcggctttggtggtttgggcatgtaacgagaagacttgta 30914676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 47848596 - 47848749
Alignment:
Q  13 gagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaa 112  Q
    |||||||||| ||||| ||| ||||| || |||||||||||  ||||| || | || |||| | |||||| | |||||||||| | | | ||| ||||||    
T  47848596 gagatgagga-tgttgtgttggatgtgtggtaagactagacgggataggatcagaagtgataacattagagagagagttggggtagcgcctatagtagaa 47848694  T
Q  113 aagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgtaa 167  Q
    |||||||| |||| | | |||| |||||||| ||||||  |||| |||| |||||    
T  47848695 aagatggtggaaaataggcttaggtggtttgggcatgtcgagagaagacttgtaa 47848749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 34869341 - 34869489
Alignment:
Q  12 agagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtaga 111  Q
    ||||||||||| ||||||||| ||||  || ||||||||||| |||||| ||||  |||||    |||||| | ||||| |||| | ||| ||| |||||    
T  34869341 agagatgagga-tgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggtagcacctatagtaga 34869439  T
Q  112 aaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||| ||||||||| | | ||||  ||||||| ||||||| |||| ||||    
T  34869440 aaagttggtagaaaataggcttagatggtttgggcatgtagagagaagac 34869489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 38920789 - 38920858
Alignment:
Q  87 gagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    ||||||||| | ||| ||| |||||||||||||| |||||| | |||| |||||||| ||||||| ||||    
T  38920789 gagttggggtagcacctatagtagaaaagatggtggaaactaggcttaagtggtttgggcatgtagagag 38920858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 46989888 - 46989961
Alignment:
Q  77 attagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgt 150  Q
    |||||| |||||||||||| | ||| |||||||||||||||||| |||  ||  |||| |||||||| ||||||    
T  46989888 attagagatagagttggggtagcacctattgtagaaaagatggttgaatttcatcttaggtggtttgggcatgt 46989961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 25826741 - 25826701
Alignment:
Q  103 tattgtagaaaagatggtagaaactcgacttatgtggtttg 143  Q
    ||||||||||||||||||||||||||| |||  ||||||||    
T  25826741 tattgtagaaaagatggtagaaactcggcttgggtggtttg 25826701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 28858055 - 28858103
Alignment:
Q  103 tattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgta 151  Q
    |||||||||||| ||||||||||||| | ||| |||||||| |||||||    
T  28858055 tattgtagaaaacatggtagaaactcaagttaggtggtttgggcatgta 28858103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 29229899 - 29229859
Alignment:
Q  103 tattgtagaaaagatggtagaaactcgacttatgtggtttg 143  Q
    |||||||||||||||||| ||| ||||| ||||||||||||    
T  29229899 tattgtagaaaagatggttgaatctcgatttatgtggtttg 29229859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 48736250 - 48736130
Alignment:
Q  23 atgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtag 122  Q
    ||||||||||  |||| || ||||||||||   |||| ||||| ||||||  | |||| | | |||||||||| | ||| ||  ||||||||||||| ||    
T  48736250 atgttgcgttgaatgtgtggtaagactagatgagataaaattagaaatgacgacattatagagagagttggggtagcacctacagtagaaaagatgggag 48736151  T
Q  123 aaactcgacttatgtggtttg 143  Q
    ||||| |||||| ||||||||    
T  48736150 aaactagacttaggtggtttg 48736130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 26016355 - 26016488
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||||| ||||||||| ||||| || |||||||||||  |||| |||||||||| ||   |||||| | |||||||||| ||||| |||       
T  26016355 agcagagatgagga-tgttgcgttggatgtgtggtaagactagacaggatataattataaataatggcattagagagagagttggggtaacacctatatg 26016453  T
Q  109 agaaaagatggtagaaactcgacttatgtggtttg 143  Q
    ||||||||||||||||||| || ||| ||||||||    
T  26016454 agaaaagatggtagaaactagatttaggtggtttg 26016488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 43423671 - 43423793
Alignment:
Q  44 aagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttg 143  Q
    ||||||||||  ||||| |||| ||||||  | |||||| | |||||||||| ||||| ||| |||||||||||||| |||||| | |||| ||||||||    
T  43423671 aagactagacaggataggattagaaatgaccacattagagagagagttggggtaacacctatagtagaaaagatggtggaaactaggcttaggtggtttg 43423770  T
Q  144 agcatgtaaagaggagacatgta 166  Q
      |||||| |||| |||| ||||    
T  43423771 gccatgtagagagaagacttgta 43423793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 18793339 - 18793228
Alignment:
Q  23 atgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtag 122  Q
    |||||||||| ||||| ||  ||||||||||  ||||||| || ||||||  | |||| | | || ||||||| |  |||||||||||||||||||||||    
T  18793339 atgttgcgttggatgtgtggaaagactagacaggatagaactaaaaatgacgacattaaagagagggttggggtaggacttattgtagaaaagatggtag 18793240  T
Q  123 aaactcgactta 134  Q
    ||||| ||||||    
T  18793239 aaactagactta 18793228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 39422359 - 39422251
Alignment:
Q  56 gatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaaga 155  Q
    |||||||||| ||||||  |||||||||  |||||||| | ||||| ||| ||||||||||| ||||||||| |||||| ||| || || |||||| |||    
T  39422359 gatagaattagaaatgacaatattagaag-agagttggagtaacacatatagtagaaaagatagtagaaactagacttaggtgcttgga-catgtagaga 39422262  T
Q  156 ggagacatgta 166  Q
    | |||||||||    
T  39422261 gaagacatgta 39422251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 9509236 - 9509387
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||||| ||||| ||| ||||  ||||||||||||||  ||||  |||| ||||||    |||||| | |||||||||| | ||| ||| ||    
T  9509236 agcagagatgagga-tgttgtgttggatgagtgataagactagacaggatatgattagaaatgacaccattagagagagagttggggtagcacctatagt 9509334  T
Q  109 agaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    ||||||||||||| ||| | | |||| || ||||| ||||||| |||| ||||    
T  9509335 agaaaagatggtaaaaaataggcttaggtagtttgggcatgtagagagaagac 9509387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 15577413 - 15577493
Alignment:
Q  84 atagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatg 164  Q
    |||||||||||  | ||||||| |||||||||||||| ||| || |  ||| |||||||||||||||| |||| |||||||    
T  15577413 atagagttgggatatcacttatagtagaaaagatggtggaagctgggattaggtggtttgagcatgtatagagaagacatg 15577493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 37263324 - 37263395
Alignment:
Q  85 tagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    ||||||||||| | ||| ||| ||||||||||| ||||||||| |||||  |||||||| ||||||| ||||    
T  37263324 tagagttggggtagcacctatagtagaaaagatagtagaaactagacttcagtggtttgggcatgtagagag 37263395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 23791911 - 23791853
Alignment:
Q  107 gtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgt 165  Q
    ||||||||||||||||| |||  ||||| |||||||| ||||||| |||| ||||||||    
T  23791911 gtagaaaagatggtagatactaaacttaggtggtttgtgcatgtagagagaagacatgt 23791853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 51812519 - 51812589
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    |||||||||| ||||  ||| |||||||||||||| |||||| | |||||||| |||| ||||||| ||||    
T  51812519 agagttggggtaacaactatagtagaaaagatggtggaaactaggcttatgtgatttgggcatgtagagag 51812589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 52073751 - 52073673
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggt-agaaactcgacttatgtggtttgagcatgtaaagaggagacat 163  Q
    |||||||||| | ||| |||||||||||||||||| | ||||||| |||| ||||||||  |||||| |||| ||||||    
T  52073751 agagttggggtagcacctattgtagaaaagatggtaaaaaactcggcttaggtggtttggacatgtagagagaagacat 52073673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 13828001 - 13827925
Alignment:
Q  90 ttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    |||||||| ||| ||| |||||||||||||| |||||| |  ||| ||||||||| |||||| |||| |||| ||||    
T  13828001 ttggggcagcacctatagtagaaaagatggtggaaactagggttaggtggtttgaacatgtagagagaagacctgta 13827925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 38868898 - 38868946
Alignment:
Q  108 tagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    ||||||||||||| |||||||| |||| |||||||| ||||||| ||||    
T  38868898 tagaaaagatggtggaaactcggcttaggtggtttgggcatgtagagag 38868946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 32043522 - 32043659
Alignment:
Q  24 tgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtaga 123  Q
    ||||||||| ||||| || |||||||||||  |||||||||| ||||||  | |||||| | |||||||||| | ||| ||| ||| |||||||||||||    
T  32043522 tgttgcgttggatgtgtggtaagactagacgggatagaattagaaatgacaacattagagagagagttggggtatcacctatagtacaaaagatggtaga 32043621  T
Q  124 aactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||| |||||  ||||||||  |||||| |||| ||||    
T  32043622 aactagactttggtggtttggccatgtagagagaagac 32043659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 39051065 - 39051193
Alignment:
Q  14 agatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaa 113  Q
    ||||||||| ||||| ||||||||| || |||||| |||| ||||||||||| ||||||  ||||| || | |||||||||  ||||| |||  | ||||    
T  39051065 agatgagga-tgttgtgttagatgtgtggtaagacaagacatgatagaattagaaatgacaatattcgagagagagttgggataacacctatcattgaaa 39051163  T
Q  114 agatggtagaaactcgacttatgtggtttg 143  Q
    |||||| |||||||||  ||| ||||||||    
T  39051164 agatggcagaaactcggtttaggtggtttg 39051193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 39953628 - 39953481
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||| ||||||||||| ||||| || ||||| || || ||||| ||||| |||| || | |||||| | |||||||||  | ||| |||       
T  39953628 agcagagatgag-aatgttgcgttggatgtgtggtaagattaaacatgatataattagaaataatgacattagagagagagttgggatagcacctatatg 39953530  T
Q  109 agaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagagg 157  Q
    ||||||||||||||||||| || ||| |||||||  ||||||| |||||    
T  39953529 agaaaagatggtagaaactagatttaggtggtttaggcatgtagagagg 39953481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 13172011 - 13171867
Alignment:
Q  11 cagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtag 110  Q
    |||||||||| |||||||| || ||||| |  |||||||||||  ||||| |||| ||||||  | |||||| | |||||||||| | ||| ||| ||||    
T  13172011 cagagatgag-aatgttgcattggatgtgtagtaagactagacgggataggattagaaatgacaagattagagagagagttggggaagcacctatagtag 13171913  T
Q  111 aaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    |||||||||| |||| |   |||| |||||||| |||| |||||||    
T  13171912 aaaagatggtggaaaatatgcttaggtggtttgggcatataaagag 13171867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 9695583 - 9695695
Alignment:
Q  44 aagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttg 143  Q
    ||||||||||  |||||||||| ||||||  | |||| | | | | |||||| | ||| ||| |||||||||||||| |||||||| |||| ||||||||    
T  9695583 aagactagacaggatagaattagaaatgacaacattatagagatatttggggtagcacctatagtagaaaagatggtggaaactcggcttaggtggtttg 9695682  T
Q  144 agcatgtaaagag 156  Q
     ||||||| ||||    
T  9695683 ggcatgtagagag 9695695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 30456479 - 30456443
Alignment:
Q  107 gtagaaaagatggtagaaactcgacttatgtggtttg 143  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30456479 gtagaaaagatggtagaaactagacttatgtggtttg 30456443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 43732561 - 43732629
Alignment:
Q  97 aacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgt 165  Q
    ||||| ||| ||||||||||||||||||||  |||||| ||||||||  |||||||| || ||||||||    
T  43732561 aacacctatagtagaaaagatggtagaaacaagacttaggtggtttgcacatgtaaaaagaagacatgt 43732629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 33666787 - 33666730
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttg 143  Q
    |||||||||| | ||| ||| |||||||||||||||||||||| |||||  |||||||    
T  33666787 agagttggggtagcacctatcgtagaaaagatggtagaaactctacttaaatggtttg 33666730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 34196066 - 34196131
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgta 151  Q
    |||||||||| | ||| ||| |||||||| |  ||||||||| ||||||||||||||| |||||||    
T  34196066 agagttggggtagcacctatagtagaaaaaacagtagaaactagacttatgtggtttgggcatgta 34196131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 1549650 - 1549590
Alignment:
Q  101 cttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||||||||||||||||||  |||||| | |||| || ||||||||||||| |||| ||||    
T  1549650 cttattgtagaaaagatgggggaaactaggcttaggtagtttgagcatgtagagagaagac 1549590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 30113550 - 30113446
Alignment:
Q  21 gaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggt 120  Q
    |||||||| | ||||||| || ||||| ||||  |||||  ||||| |||||   ||||||| | ||||| |||| ||||| ||| ||||||||||||||    
T  30113550 gaatgttgtgctagatgtttgttaagaatagatatgataagattatgaatgacattattagagagagagtcggggtaacacatatagtagaaaagatggt 30113451  T
Q  121 agaaa 125  Q
    |||||    
T  30113450 agaaa 30113446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 38689532 - 38689588
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggttt 142  Q
    |||||||||| ||  | ||||||||||||||||||||||||||  |||| |||||||    
T  38689532 agagttggggtaatgcctattgtagaaaagatggtagaaactcagcttaggtggttt 38689588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 39946775 - 39946890
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||||| ||||||||| ||||  || ||||||||||| |||||| ||||| |||||    |||| | | ||||| |||| | ||| ||| ||    
T  39946775 agcagagatgagga-tgttgcgttggatgagtggtaagactagacatgataggattatgaatgacaccattatagaaagagtgggggtagcacctatagt 39946873  T
Q  109 agaaaagatggtagaaa 125  Q
    ||||||| |||||||||    
T  39946874 agaaaagttggtagaaa 39946890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 46371988 - 46372097
Alignment:
Q  56 gatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaaga 155  Q
    |||||||||| ||||||| | |||||| |||||||||||| | ||| ||| || ||||| || ||||||||| |||||| |||||||| ||||||| |||    
T  46371988 gatagaattagaaatgatgacattagagatagagttggggtagcacctatagtcgaaaatattgtagaaactagacttaggtggtttgtgcatgtagaga 46372087  T
Q  156 ggagacatgt 165  Q
    | ||||||||    
T  46372088 gaagacatgt 46372097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 54470192 - 54470282
Alignment:
Q  77 attagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgtaa 167  Q
    |||||| | |||||||||| | ||| ||| |||||||||||||| |||||| |||||| |||||||| ||||||| |||| ||||||||||    
T  54470192 attagagagagagttggggtagcacctatagtagaaaagatggtggaaactagacttaagtggtttgggcatgtagagagaagacatgtaa 54470282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 49738892 - 49738817
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||| ||||| | ||| ||||||||||||||||||||||||||| |||| ||| ||||||| ||||||||| ||||    
T  49738892 agagctggggtagcacctattgtagaaaagatggtagaaactcggcttaggtgatttgagcgtgtaaagagaagac 49738817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 36557347 - 36557248
Alignment:
Q  56 gatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaaga 155  Q
    |||||||||| ||||||  ||||| || | |||||||||||| |||  || ||||||||||||||||||||| |||||| |||||||| | ||||| |||    
T  36557347 gatagaattagaaatgacgatattggagagagagttggggcagcacccatagtagaaaagatggtagaaactagactta-gtggtttgggaatgtagaga 36557249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 25257910 - 25257794
Alignment:
Q  43 taagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggttt 142  Q
    ||||||||||| ||||||||||| ||||||  | |||||| |  |||||| || ||||| ||   || |||||||||||||| || |||||| |||||||    
T  25257910 taagactagacatgatagaattagaaatgacaacattagaga--gagttgaggtaacacctacaatataaaagatggtagaagctagacttaggtggttt 25257813  T
Q  143 gagcatgtaaagaggagac 161  Q
    ||||||||| |||| ||||    
T  25257812 gagcatgtagagagaagac 25257794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 934754 - 934649
Alignment:
Q  55 tgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaag 154  Q
    ||||||||||| ||||||| |||||||| | || ||||||| | ||| |||  | |||||||||||||||||||  |||| |||||||| ||| ||| ||    
T  934754 tgatagaattagaaatgataatattagagagagggttggggtatcacctatcat-gaaaagatggtagaaactcatcttaggtggtttgggcaagtagag 934656  T
Q  155 aggagac 161  Q
    |||||||    
T  934655 aggagac 934649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 42285967 - 42285913
Alignment:
Q  107 gtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||| |||| ||||    
T  42285967 gtagaaaagatggtagaaactagacttaggtggtttgggcatgtatagagaagac 42285913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 51252803 - 51252670
Alignment:
Q  30 gttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcg 129  Q
    ||||||||| |  |||||||||||  ||||| |||| |||||| || |||||| |  ||||||||| | ||| | | |||||||||||||| |||||| |    
T  51252803 gttagatgtgtcgtaagactagacgagataggattagaaatgactacattagaga--gagttggggtagcacctctagtagaaaagatggtggaaactag 51252706  T
Q  130 acttatgtggtttgagcatgtaaagaggagacatgt 165  Q
     |||| ||||| || ||||||| |||| ||||||||    
T  51252705 gcttaggtggtatgggcatgtagagagaagacatgt 51252670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 10775737 - 10775654
Alignment:
Q  59 agaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggttt 142  Q
    ||||||| ||||||  | |||||| | || ||||||| ||||| ||| ||||||||||||||||||||| ||| || |||||||    
T  10775737 agaattagaaatgacaacattagagagagtgttggggtaacacctatagtagaaaagatggtagaaactagacataggtggttt 10775654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 35555935 - 35555860
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||||| ||| | ||| ||| ||||||||||||||||||||| |||||| |||||||| |||| || |||| ||||    
T  35555935 agagttcgggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatttagagagaagac 35555860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 44360081 - 44360159
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgt 165  Q
    |||||||||| | ||| ||| ||||||||||||||||||||| || ||| || ||||| ||||||| |||| ||||||||    
T  44360081 agagttggggtatcacctatagtagaaaagatggtagaaactaga-ttaggttgtttgggcatgtagagagaagacatgt 44360159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 31897695 - 31897641
Alignment:
Q  107 gtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    ||||||||||||||||||||| |||||  |||||||| ||||||| |||| ||||    
T  31897695 gtagaaaagatggtagaaactagacttgggtggtttgcgcatgtagagagcagac 31897641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 46715643 - 46715581
Alignment:
Q  103 tattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgt 165  Q
    |||||||||||||||||| |||||| | |||| ||||| || ||||||| |||| ||||||||    
T  46715643 tattgtagaaaagatggtggaaactaggcttaggtggtgtgggcatgtagagagaagacatgt 46715581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 31459045 - 31459094
Alignment:
Q  107 gtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    ||||||||||||||||||| | | |||| |||||||| ||||||||||||    
T  31459045 gtagaaaagatggtagaaaataggcttaggtggtttgggcatgtaaagag 31459094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 12494668 - 12494783
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||||| ||||||||| ||||  || ||||||||||| |||||| ||||  |||||    |||||| | ||||| |||| | ||| ||| ||    
T  12494668 agcagagatgagga-tgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggtagcacctatagt 12494766  T
Q  109 agaaaagatggtagaaa 125  Q
    ||||||| |||||||||    
T  12494767 agaaaagttggtagaaa 12494783  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 41192830 - 41192910
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    |||||||||| | ||| ||  |||||||||||||| |||||| |||||| ||| |||| ||||||| |||| |||| ||||    
T  41192830 agagttggggtagcacctacagtagaaaagatggtggaaactagacttaggtgatttgtgcatgtagagagaagacctgta 41192910  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 3987011 - 3987116
Alignment:
Q  56 gatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaaga 155  Q
    |||||||||| ||||||  ||||| || | |||||||||| | ||| ||| ||||||||||||||||||||| |||||| |||||||| | ||||| |||    
T  3987011 gatagaattagaaatgacgatattggagagagagttggggtatcacctatagtagaaaagatggtagaaactagacttaggtggtttgggaatgtagaga 3987110  T
Q  156 ggagac 161  Q
    | ||||    
T  3987111 gaagac 3987116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 39535728 - 39535672
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggttt 142  Q
    |||||||||||||||| ||| |||||||||||||||||||| || |||| |||||||    
T  39535728 agagttggggcaacacctatagtagaaaagatggtagaaacccggcttaggtggttt 39535672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 21200563 - 21200622
Alignment:
Q  107 gtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    |||||||||||||| |||||| |||||| |||||||| ||||||| |||| |||||||||    
T  21200563 gtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgta 21200622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 345042 - 344960
Alignment:
Q  43 taagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggtagaaa 125  Q
    |||||||||||  ||||| |||| ||||||| | |||||| | |||||||||| | ||||||| |||||||||||| ||||||    
T  345042 taagactagacgagataggattagaaatgatgacattagagagagagttggggtagcacttatagtagaaaagatgttagaaa 344960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 37351399 - 37351465
Alignment:
Q  84 atagagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgt 150  Q
    |||||||| ||  ||||||||| ||||||||||||||||||||| |||||  |||||||| ||||||    
T  37351399 atagagttaggataacacttatagtagaaaagatggtagaaactagacttgagtggtttgggcatgt 37351465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 54128296 - 54128437
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||||| ||||||||| ||||  || ||| |||||||  ||||| ||||| |||||    |||||| | || ||||||| | ||| ||| ||    
T  54128296 agcagagatgagga-tgttgcgtttgatgagtggtaaaactagacgcgataggattatgaatgacaccattagagagagtgttggggtagcacctatagt 54128394  T
Q  109 agaaaagatggtagaaactcgacttatgtggtttgagcatgta 151  Q
    ||||||||||||||||| | | |||| |||||||| |||||||    
T  54128395 agaaaagatggtagaaaataggcttaggtggtttgggcatgta 54128437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 11581460 - 11581517
Alignment:
Q  108 tagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgt 165  Q
    |||||||||||||||||||| |||||| |||||||| | ||||| |||| ||||||||    
T  11581460 tagaaaagatggtagaaactagacttaggtggtttgggtatgtagagagaagacatgt 11581517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 52138718 - 52138874
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||||| ||||||||| ||||  || ||||||||||| |||||| ||||  |||||    |||||| | ||||| |||| | ||| ||| ||    
T  52138718 agcagagatgagga-tgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggtagcacctatagt 52138816  T
Q  109 agaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    ||||||| ||||||||| | | ||||  ||||||| ||||||| |||| |||| ||||    
T  52138817 agaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacctgta 52138874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 500 - 544
Target Start/End: Original strand, 634991 - 635035
Alignment:
Q  500 gatagacaaaatgataataatcattaaaaactcagacacacaagt 544  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||    
T  634991 gatagacaaaataataataatcattaaaaactcataaacacaagt 635035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 50960921 - 50960846
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||||||||| | ||| ||| ||||||||||||||||||| | | |||| |||||||| ||||||| |||| ||||    
T  50960921 agagttggggtagcacctatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagac 50960846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 47788895 - 47788965
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    |||||||||| |||| ||||  ||||||||||||| | ||||| ||||| |||||||| ||||||| ||||    
T  47788895 agagttggggtaacaattatcatagaaaagatggtggtaactcaacttaggtggtttgtgcatgtagagag 47788965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 29374945 - 29374985
Alignment:
Q  103 tattgtagaaaagatggtagaaactcgacttatgtggtttg 143  Q
    ||||| |||||||||||||||||||||||||| ||| ||||    
T  29374945 tattggagaaaagatggtagaaactcgacttaggtgatttg 29374985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 31453227 - 31453151
Alignment:
Q  86 agagttggggcaacacttattgta-gaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||||||||||| ||| ||| ||| |||||||||||||||||| |||||| || ||||  ||||||| |||| ||||    
T  31453227 agagttggggcagcacctatagtaagaaaagatggtagaaactagacttaggttgttttggcatgtagagagaagac 31453151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 18188774 - 18188844
Alignment:
Q  86 agagttggggcaacacttattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    |||||||||| | ||| | || ||||||||||||| ||| ||||||||| |||||||| ||||||||||||    
T  18188774 agagttggggtagcacctcttctagaaaagatggtggaagctcgacttaggtggtttgggcatgtaaagag 18188844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 38429806 - 38429953
Alignment:
Q  13 gagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaa 112  Q
    |||||||||| ||||||||| ||||  || ||||||||||| |||||| ||||  |||||    |||||| | ||||| |||||| ||| ||| ||||||    
T  38429806 gagatgagga-tgttgcgttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagagtgggggcagcacctatagtagaa 38429904  T
Q  113 aagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    ||| ||||||||| | | ||||  |||||||  ||||||||||| ||||    
T  38429905 aagttggtagaaaataggcttagatggtttggacatgtaaagagaagac 38429953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 41779577 - 41779521
Alignment:
Q  105 ttgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
    |||||||||| ||||| ||||||||||||| ||||||||| |||||| |||| ||||    
T  41779577 ttgtagaaaaaatggtggaaactcgacttaggtggtttgatcatgtagagagaagac 41779521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 4598915 - 4598793
Alignment:
Q  23 atgttgcgttagatgtatgataagactagacttgatagaattataaatgattatatt--agaaatagagttggggcaacacttattgtagaaaagatggt 120  Q
    |||||||||| ||||| || |||||||||||  |||||||||  ||||||  | |||  ||| | |||||||||| | ||| ||| |||| |||||||||    
T  4598915 atgttgcgttggatgtgtggtaagactagacgggatagaattcaaaatgacgacattagagagagagagttggggtagcacctatagtagtaaagatggt 4598816  T
Q  121 agaaactcgacttatgtggtttg 143  Q
    ||||||| |||||  ||||||||    
T  4598815 agaaactagactttggtggtttg 4598793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 13241011 - 13240953
Alignment:
Q  108 tagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagaggagacatgta 166  Q
    ||||||||||||| |||||| | |||| |||||||| ||||||| |||| |||||||||    
T  13241011 tagaaaagatggtggaaactaggcttaggtggtttgggcatgtagagagaagacatgta 13240953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 45077670 - 45077727
Alignment:
Q  13 gagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatg 71  Q
    |||||||||| ||||||||| ||||| || |||||||||||| |||||||||| |||||    
T  45077670 gagatgagga-tgttgcgttggatgtgtggtaagactagactagatagaattagaaatg 45077727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 23714611 - 23714474
Alignment:
Q  21 gaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggt 120  Q
    |||||||| ||| ||||| || |||||||||||   |||| |||| ||||||  | ||||||  ||||||||||  | ||| ||| ||||||||||||||    
T  23714611 gaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgacgacattaga--tagagttgggt-agcacatatagtagaaaagatggt 23714515  T
Q  121 agaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
     |||||| ||||||||| ||||  ||||||| |||| ||||    
T  23714514 ggaaactagacttatgtagtttaggcatgtagagagaagac 23714474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 24102283 - 24102146
Alignment:
Q  21 gaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgtagaaaagatggt 120  Q
    |||||||| ||| ||||| || |||||||||||   |||| |||| ||||||  | ||||||  ||||||||||  | ||| ||| ||||||||||||||    
T  24102283 gaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgacgacattaga--tagagttgggt-agcacatatagtagaaaagatggt 24102187  T
Q  121 agaaactcgacttatgtggtttgagcatgtaaagaggagac 161  Q
     |||||| ||||||||| ||||  ||||||| |||| ||||    
T  24102186 ggaaactagacttatgtagtttaggcatgtagagagaagac 24102146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 36183369 - 36183484
Alignment:
Q  9 agcagagatgaggaatgttgcgttagatgtatgataagactagacttgatagaattataaatgattatattagaaatagagttggggcaacacttattgt 108  Q
    |||||||||||||| ||||||||| ||||  || ||||||||||| |||||| ||||  |||||    |||||| | ||||| |||| | ||| ||| ||    
T  36183369 agcagagatgagga-tgttgcgttggatgagtggtaagactagacatgataggattaggaatgacacaattagagagagagtaggggtagcacctatagt 36183467  T
Q  109 agaaaagatggtagaaa 125  Q
    ||||||| |||||||||    
T  36183468 agaaaagttggtagaaa 36183484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 11809 - 11862
Alignment:
Q  103 tattgtagaaaagatggtagaaactcgacttatgtggtttgagcatgtaaagag 156  Q
    |||||||||||||||||||| |||||| |||| |||||||| ||||||| ||||    
T  11809 tattgtagaaaagatggtaggaactcggcttaggtggtttgggcatgtagagag 11862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 4623 - 4574
Alignment:
Q  23 atgttgcgttagatgtatgataagactagacttgatagaattataaatga 72  Q
    |||||||||| |||| ||| ||||||||||| |||||| |||||||||||    
T  4623 atgttgcgttggatgaatggtaagactagacatgataggattataaatga 4574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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