View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11667_low_2 (Length: 511)
Name: NF11667_low_2
Description: NF11667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11667_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 11287515 - 11287718
Alignment:
| Q |
23 |
ttaccttcggttttgaaaccaaactttgatctgttttggttcaatgttagaaaggataggacattctctaatgagttgttgtcttctcaaagaactaggc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11287515 |
ttaccttcggttttgaaaccaaactttgatctgtttaggttcaatgttagaaaggataggacattctctaatgagttgttgtcttctcaaagaactaggc |
11287614 |
T |
|
| Q |
123 |
ttaggacattctgaataaactctctccaaagcttcaacttgttcaggagtgtacctcacatatttaccagcatccatttctttatgcatagaaagtgcca |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11287615 |
ttaggacattctgaataaactctctccaaagcttcaacttgttcaggagtgtacctcacatatttaccggcatccatttctttatgcatagaaagtgcca |
11287714 |
T |
|
| Q |
223 |
ttgt |
226 |
Q |
| |
|
|||| |
|
|
| T |
11287715 |
ttgt |
11287718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 290 - 498
Target Start/End: Original strand, 11287782 - 11287998
Alignment:
| Q |
290 |
ctagtttggctcttcttcttcactgtgcaggctctcttgaccaagagagcctccactcactttcatagaaaatggttaaagagttgaaagagaggttgaa |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11287782 |
ctagtttggctcttcttcttcactgtgcaggctctcttgaccaagagagcctccactcactttcatagaaaatggttaaagagttgaaagagaggttgaa |
11287881 |
T |
|
| Q |
390 |
ggtggaagatggtaaggtagagagaaaacaaa--------gtgttggcagaaagagatggaatggaacaagaaacagtgaaggaaagtagtgtgtggttt |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11287882 |
ggtggaagatggtaaggtagagagaaaacaaagagagaaggtgttggcagaaagagatggaatggaacaagaaacagtgaaggaaagtagtgtgtggttt |
11287981 |
T |
|
| Q |
482 |
tatctaagtatttgcct |
498 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
11287982 |
tatctatgtatttgcct |
11287998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 40312840 - 40312747
Alignment:
| Q |
99 |
tgttgtcttctcaaagaactaggcttaggacattctgaataaactctctccaaagcttcaacttgttcaggagtgtacctcacatatttaccag |
192 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||| |||||| | ||||||||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
40312840 |
tgttgccttctcaatgaactaggcttagggcattccacataaaccttttccaaagcttcaatctgttcagcagtgtacctcacatatttgccag |
40312747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 43511312 - 43511391
Alignment:
| Q |
24 |
taccttcggttttgaaaccaaactttgatctgttttggttcaatgttagaaaggataggacattctctaatgagttgttg |
103 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |||||||| | ||| || |||||||| |||| ||| || ||||| |
|
|
| T |
43511312 |
taccttctattttggaaccaaactttgatctgtttaggttcaatatgagagagaataggacactctcgaataagctgttg |
43511391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 21743602 - 21743765
Alignment:
| Q |
24 |
taccttcggttttgaaaccaaactttgatctgttttggttcaatgttagaaaggataggacattctctaatgagttgttgtcttctcaaagaactaggct |
123 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| || | ||| | |||||||||||||| |||||||||| |
|
|
| T |
21743602 |
taccttcgattttggaaccaaaccttgatctgtttgggttcaatgttggaaagaataggacactcacgaatcaattgttgtcttctcatggaactaggct |
21743701 |
T |
|
| Q |
124 |
taggacattctgaataaactctctccaaagcttcaacttgttcaggagtgtacctcacatattt |
187 |
Q |
| |
|
||||||| || | ||| || || ||||| |||||||||||||||| ||| ||||| |||||||| |
|
|
| T |
21743702 |
taggacactcagcatacaccctttccaatgcttcaacttgttcagaagtatacctaacatattt |
21743765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 4336282 - 4336172
Alignment:
| Q |
23 |
ttaccttcggttttgaaaccaaactttgatctgttttggttcaatgttagaaaggataggacattctctaatgagttgttgtcttctcaaagaactaggc |
122 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||| | ||||| || |
|
|
| T |
4336282 |
ttaccttctattctgaaaccaaactttgatttgtcttggttcaatattagaaagaataggacattctctaataagttgttgtcttcgaattgaacttggt |
4336183 |
T |
|
| Q |
123 |
ttaggacattc |
133 |
Q |
| |
|
||||||||||| |
|
|
| T |
4336182 |
ttaggacattc |
4336172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 51354490 - 51354406
Alignment:
| Q |
24 |
taccttcggttttgaaaccaaactttgatctgttttggttcaatgttagaaaggataggacattctctaatgagttgttgtcttc |
108 |
Q |
| |
|
||||||| ||| || |||||||||||||||||||| |||||||| | ||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
51354490 |
taccttctgttctggaaccaaactttgatctgtttaggttcaatatgagagagaataggacactctctaatgagttgttgtcttc |
51354406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University