View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11667_low_3 (Length: 406)
Name: NF11667_low_3
Description: NF11667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11667_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 47743530 - 47743331
Alignment:
| Q |
12 |
agagaagagaagataccttgaaattgggaaaaagcggtaatggaatctaaaaagaatgaagaattgttggagaagaggagttataataatgcacaagcac |
111 |
Q |
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| T |
47743530 |
agagaagagaagataccttgaaattgggaaaaagcggtaatggaatctaaaaagaatgaag-attgttggagaagaggagttataataat------gcac |
47743438 |
T |
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| Q |
112 |
aaacacaaacacgataacgtattagtgttgtagttgttgtcgtgtttaactaactaaaagt---------aaaaccagactctgtccttcttcatcgcag |
202 |
Q |
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| T |
47743437 |
aaacacaaacacgataacgtatttgtgttgtagttgttgtcgtgtttaactaactaaaagtaaaacaaacaaaaccagactctgtccttcttcatcgcag |
47743338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 274 - 387
Target Start/End: Complemental strand, 47743264 - 47743151
Alignment:
| Q |
274 |
ctctctcgttcaacacaaatacgctaacttgcggcggctcccacgtgtggttattgtctactttgggccgtctgattcatttcttcatgttactagttgt |
373 |
Q |
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| T |
47743264 |
ctctctcgttcaacacaaatacgctaacttgcggcggctcccacgtgtggttattgtctactttgggccgtctgattcatttcttcatgttactagttgt |
47743165 |
T |
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| Q |
374 |
catctccaactcgc |
387 |
Q |
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| T |
47743164 |
catctccaactcgc |
47743151 |
T |
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