View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11667_low_4 (Length: 272)
Name: NF11667_low_4
Description: NF11667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11667_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34136304 - 34136079
Alignment:
| Q |
1 |
ctacagtagagaaagatagtttaataaatgtatcacttagctcat--acacaaccaaagattgatcagtgtttctgaaatgagtgagtggctgcaatcaa |
98 |
Q |
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| T |
34136304 |
ctacagtagagaaagatagtttaataaatgtatcacttagctcatttacacaaccaaagattgatcagtgtttctgaaatgagtgagtggctgcaatcaa |
34136205 |
T |
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| Q |
99 |
atttactagtattgaaattactagtgtgcattatgtaagaattttatctcggaataaaagaaaatttagttattaccgttcattatgtttgatcttcaaa |
198 |
Q |
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| T |
34136204 |
atttgctagtattgaaattactagtgtgcattatgtaagaattttatctcagaataaaagaaaatttagttattaccgttcattatgtttgatc-tcaaa |
34136106 |
T |
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| Q |
199 |
tattgaattgatataggctttcgaatt |
225 |
Q |
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| T |
34136105 |
tattgaattgatataggccttcaaatt |
34136079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 210
Target Start/End: Complemental strand, 34139248 - 34139049
Alignment:
| Q |
7 |
tagagaaagatagtttaataaatgtatcacttagctcat--acacaaccaaagattgatcagtgtttctgaaatgagtgagtggctgcaatcaaatttac |
104 |
Q |
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| T |
34139248 |
tagagaaagatattttaataaatgtatgacttagctcatgtaaacaaccaaagattgatcggtgtttctaaaatgagcaactggctacaatcaaattt-- |
34139151 |
T |
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| Q |
105 |
tagtattgaaattactagtgtgcattatgtaagaattttatctcggaataaaagaaaatttagttattaccgttcattatgtttgatcttcaaatattga |
204 |
Q |
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| T |
34139150 |
--gtattagaattact-gggtgcattatgtatgcaatttatctcataataaaagacaataaagttaataccgttcattatgtttgatc-tcaaaaattga |
34139055 |
T |
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