View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_high_11 (Length: 597)

Name: NF11668_high_11
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_high_11
NF11668_high_11
[»] chr8 (14 HSPs)
chr8 (1-508)||(41722059-41722569)
chr8 (437-506)||(14999169-14999238)
chr8 (437-506)||(41403994-41404063)
chr8 (439-506)||(16324844-16324911)
chr8 (439-506)||(43801705-43801772)
chr8 (434-506)||(15009092-15009164)
chr8 (439-506)||(6911029-6911096)
chr8 (439-506)||(16325080-16325147)
chr8 (439-506)||(43801470-43801537)
chr8 (440-506)||(41403760-41403826)
chr8 (439-506)||(8489373-8489440)
chr8 (447-506)||(22781063-22781122)
chr8 (472-506)||(6911263-6911297)
chr8 (438-506)||(9133899-9133968)
[»] chr2 (13 HSPs)
chr2 (439-506)||(29893031-29893098)
chr2 (438-506)||(4371453-4371521)
chr2 (439-506)||(22563210-22563277)
chr2 (439-506)||(21265563-21265630)
chr2 (455-506)||(12232579-12232630)
chr2 (439-506)||(21265796-21265863)
chr2 (439-506)||(22563444-22563511)
chr2 (439-506)||(17200078-17200145)
chr2 (437-506)||(34645780-34645849)
chr2 (439-506)||(34645547-34645614)
chr2 (455-491)||(33491417-33491453)
chr2 (437-476)||(33491327-33491366)
chr2 (440-506)||(4682757-4682823)
[»] chr7 (9 HSPs)
chr7 (438-506)||(35207177-35207245)
chr7 (438-506)||(25048258-25048326)
chr7 (439-506)||(19318453-19318520)
chr7 (439-506)||(35207409-35207476)
chr7 (437-506)||(39983871-39983940)
chr7 (439-506)||(19318382-19318449)
chr7 (455-506)||(29474646-29474697)
chr7 (439-506)||(2834433-2834500)
chr7 (439-506)||(35363318-35363385)
[»] chr1 (12 HSPs)
chr1 (438-506)||(24883202-24883270)
chr1 (439-503)||(24882971-24883035)
chr1 (440-506)||(27171800-27171866)
chr1 (441-506)||(34969987-34970052)
chr1 (446-506)||(49777057-49777117)
chr1 (439-506)||(3385308-3385375)
chr1 (439-506)||(3385545-3385612)
chr1 (439-506)||(49776819-49776886)
chr1 (440-506)||(33401090-33401156)
chr1 (455-506)||(33156688-33156739)
chr1 (439-506)||(34622559-34622626)
chr1 (442-506)||(39781073-39781137)
[»] chr5 (10 HSPs)
chr5 (430-506)||(31193956-31194032)
chr5 (439-506)||(31194199-31194266)
chr5 (437-506)||(36955301-36955370)
chr5 (438-506)||(14076903-14076971)
chr5 (439-506)||(17370067-17370134)
chr5 (455-506)||(36955528-36955579)
chr5 (439-506)||(8754658-8754725)
chr5 (465-506)||(43449493-43449534)
chr5 (455-506)||(32347131-32347182)
chr5 (472-506)||(42546583-42546617)
[»] chr4 (16 HSPs)
chr4 (439-506)||(50544256-50544323)
chr4 (439-506)||(54316063-54316130)
chr4 (439-506)||(7061972-7062039)
chr4 (455-503)||(42475892-42475940)
chr4 (444-506)||(46993072-46993134)
chr4 (437-504)||(9551461-9551528)
chr4 (439-506)||(11789859-11789926)
chr4 (439-506)||(17914982-17915049)
chr4 (439-504)||(24673957-24674022)
chr4 (442-506)||(23655302-23655366)
chr4 (467-506)||(5466083-5466122)
chr4 (455-498)||(21785940-21785983)
chr4 (455-508)||(3556382-3556435)
chr4 (441-506)||(5465855-5465920)
chr4 (466-506)||(8538361-8538401)
chr4 (467-506)||(51959733-51959773)
[»] chr3 (13 HSPs)
chr3 (439-506)||(8799317-8799384)
chr3 (439-506)||(38499819-38499886)
chr3 (440-506)||(4041417-4041483)
chr3 (438-506)||(38500055-38500123)
chr3 (444-506)||(53197217-53197279)
chr3 (446-506)||(43797586-43797646)
chr3 (455-506)||(43797368-43797419)
chr3 (438-506)||(53196987-53197055)
chr3 (467-506)||(46883646-46883685)
chr3 (464-506)||(25349944-25349986)
chr3 (440-506)||(43797875-43797941)
chr3 (439-476)||(29828685-29828722)
chr3 (438-506)||(48346213-48346281)
[»] chr6 (3 HSPs)
chr6 (437-506)||(22748586-22748655)
chr6 (434-506)||(16125517-16125589)
chr6 (465-506)||(24197709-24197750)


Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 41722569 - 41722059
Alignment:
Q  1 taaatgaaatcatatcgctctctgttcctaattcctatcttactacactgtttgatgttaagaaagaaaactaaaaaactatctttgagatgtttgggat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41722569 taaatgaaatcatatcgctctctgttcctaattcctatcttactacactgtttgatgttaagaaagaaaactaaaaaactatctttgagatggttgggat 41722470  T
Q  101 caagtgccaacagatatttctcaagacaatagtttccgt-gtccttgctacaaaccaatttttcgcatgaaaattgaaagcagcatcgcatataattatc 199  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41722469 caagtgccaacagatatttctcaagacaatagtttccgttgtccttgctacaaaccaatttttcgcatgaaaattgaaagcagcatcacatataattatc 41722370  T
Q  200 aacaatatacaattacctcaaacatacctaatatagttaattagttatagtaatcaaattcatgctagacaaatctcgtgaagaagaactttgccatcta 299  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41722369 aacaatatacaattacctcaaacatatctaatatagttaattaattatagtaatcaaactcatgctagacaaatctcgtgaagaagaactttgccatcta 41722270  T
Q  300 ttgtagccttagctggtttgagatattaatcttcatagtcgtgattaaagaatacccattcatt--nnnnnnnntgtaacagagctatctatttctttgt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  41722269 ttgtagccttagctggtttgagatattaatcttcatagtcgtgattaaagaatacccattcattaaaaaaataatgtaacagagctatctatttctttgt 41722170  T
Q  398 tatctgcattctaccctttcaattttgagggtggggttgaggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgc 497  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||    
T  41722169 tatctgcattctaccctttcaattttaatggtggggttgaggagttcgggtatgtttcatttaggctaagctctatttactttatttagagcttggatgc 41722070  T
Q  498 aagacatgttg 508  Q
    |||||||||||    
T  41722069 aagacatgttg 41722059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 437 - 506
Target Start/End: Original strand, 14999169 - 14999238
Alignment:
Q  437 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||| |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14999169 aggagttcggatatgctccatttaggctaagctcaatttactccatttagggtttggatgcaagacatgt 14999238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 437 - 506
Target Start/End: Complemental strand, 41404063 - 41403994
Alignment:
Q  437 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||| ||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  41404063 aggagtttgggtatgctccatttaggttaagttcaatttactctatttagggtttggatgcaagacatgt 41403994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 16324844 - 16324911
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||| ||| | |||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  16324844 gagttcgggcatgctccatttaggctaagctcaatttaatccatttagggtttggatgcaagacatgt 16324911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 43801772 - 43801705
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||| ||||    
T  43801772 gagttcgggtatgttccatttaggctaagctccatttactccatttagagtttggatgcaagatatgt 43801705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 434 - 506
Target Start/End: Complemental strand, 15009164 - 15009092
Alignment:
Q  434 ttgaggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||| ||||||||||||| | |||||||||||||||  |||||||| |||||||||||||||| |||||||||    
T  15009164 ttgatgagttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgtaagacatgt 15009092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 6911029 - 6911096
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||| |||||| | |||||||||||||||| |||||||| |||||||||||||||| |||||||||    
T  6911029 gagttcaggtatgctccatttaggctaagctccatttactccatttagggtttggatgtaagacatgt 6911096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 16325147 - 16325080
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||| ||||| |||||||| || || ||| |||||||| ||||||||||||||||||||||||||    
T  16325147 gagttcgagtatgcttcatttaagccaaactccatttactccatttagggtttggatgcaagacatgt 16325080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 43801470 - 43801537
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| |||||||||||||| ||  |||||||| |||||| ||||||||| |||||||||    
T  43801470 gagttcgggtatgcttcatttaggctaaacttcatttactccatttagagtttggatgtaagacatgt 43801537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 506
Target Start/End: Original strand, 41403760 - 41403826
Alignment:
Q  440 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||| |||||||||  |||||||||||||||| ||||||| ||| |||| |||| ||||    
T  41403760 agttcgggtatgcttcatttagattaagctcaatttactccatttaggattttgatgtaagatatgt 41403826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 8489373 - 8489440
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||| ||||||| | |||||||| ||||||  ||||| || |||||||||||||||| |||||||||    
T  8489373 gagtttgggtatgctccatttaggttaagcttcatttattccatttagggtttggatgtaagacatgt 8489440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 506
Target Start/End: Original strand, 22781063 - 22781122
Alignment:
Q  447 gtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||| ||||||||||| ||  |||||||| ||| |||||||||||||||| |||||    
T  22781063 gtatgttttatttaggctaaacttcatttactccattcagggtttggatgcaaggcatgt 22781122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 506
Target Start/End: Complemental strand, 6911297 - 6911263
Alignment:
Q  472 atttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||| ||||||||||||||||||||||||||    
T  6911297 atttactccatttagggtttggatgcaagacatgt 6911263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 506
Target Start/End: Original strand, 9133899 - 9133968
Alignment:
Q  438 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttaggg-tttggatgcaagacatgt 506  Q
    |||||| ||||||| |  |||||||  ||||||||||||||| |||||||| |||||||||| |||||||    
T  9133899 ggagtttgggtatgctctatttaggtaaagctcaatttactccatttagggatttggatgcatgacatgt 9133968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 29893098 - 29893031
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29893098 gagttcgggtatgctccatttaggctaagctctatttactctatttagggtttggatgcaagacatgt 29893031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 438 - 506
Target Start/End: Original strand, 4371453 - 4371521
Alignment:
Q  438 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  4371453 ggagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgt 4371521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 22563210 - 22563277
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  22563210 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgt 22563277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 21265563 - 21265630
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||| ||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  21265563 gagttagggtatgctccatttagactaagctcaatttactccatttagggtttggatgcaagacatgt 21265630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 455 - 506
Target Start/End: Original strand, 12232579 - 12232630
Alignment:
Q  455 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  12232579 catttaggctaagctccatttactctatttagggtttggatgtaagacatgt 12232630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 21265863 - 21265796
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||| ||||| |  ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  21265863 gagttcgagtatgctctatttaagctaagctccatttactctatttagggtttggatgcaagacatgt 21265796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 22563511 - 22563444
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | |||||||||||| ||| |||||||| ||||||| ||||||||||||||||||    
T  22563511 gagttcgggtatgctccatttaggctaaactccatttactccatttaggatttggatgcaagacatgt 22563444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 17200078 - 17200145
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | ||||||||| |||||| |||||||| ||||||| |||||||| |||||||||    
T  17200078 gagttcgggtatgctccatttaggcaaagctccatttactccatttaggatttggatgtaagacatgt 17200145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 506
Target Start/End: Complemental strand, 34645849 - 34645780
Alignment:
Q  437 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||| || |||||||||| | ||| ||||| || |||||||||||||||| |||||||||    
T  34645849 aggagttcgggtatattccatttaggcttaactccatttattccatttagggtttggatgtaagacatgt 34645780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 34645547 - 34645614
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| |  ||||||| |||| || |||||||| ||||||||| ||||||||||||||||    
T  34645547 gagttcgggtatgctctatttaggttaagttctatttactccatttagggtatggatgcaagacatgt 34645614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 491
Target Start/End: Complemental strand, 33491453 - 33491417
Alignment:
Q  455 catttaggctaagctcaatttactctatttagggttt 491  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33491453 catttaggctaagctccatttactctatttagggttt 33491417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 476
Target Start/End: Original strand, 33491327 - 33491366
Alignment:
Q  437 aggagttcgggtatgtttcatttaggctaagctcaattta 476  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  33491327 aggagttcgggtatgttccatttaggctaagctccattta 33491366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 506
Target Start/End: Original strand, 4682757 - 4682823
Alignment:
Q  440 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||| ||||||   ||||||  |||||||| |||||| |||| ||||||||||||||    
T  4682757 agttcgggtatgttccatttaatttaagcttcatttactccatttagagtttagatgcaagacatgt 4682823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 438 - 506
Target Start/End: Original strand, 35207177 - 35207245
Alignment:
Q  438 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| || |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  35207177 ggagttcgggtatattccatttaggctaagctccatttactccatttagggtttggatgcaagacatgt 35207245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 25048326 - 25048258
Alignment:
Q  438 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||| | |||||||||||||||| |||||||  ||||||| ||||||||||||||||||    
T  25048326 ggagttcgggtatgctccatttaggctaagctccatttacttcatttaggatttggatgcaagacatgt 25048258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 19318520 - 19318453
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||| ||||| ||||||||||||||    
T  19318520 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttagatgcaagacatgt 19318453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 35207476 - 35207409
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||| |||| | |||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  35207476 gagttcggatatgctccatttaggctaaactccatttactccatttagggtttggatgcaagacatgt 35207409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 506
Target Start/End: Complemental strand, 39983940 - 39983871
Alignment:
Q  437 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||  ||||| | ||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  39983940 aggagttcatgtatgctccatttaggcgaagctccatttactccatttagggtttggatgcaagacatgt 39983871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 19318449 - 19318382
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | |||||||||||||||  |||||||| ||||| ||||| ||||||||||||||    
T  19318449 gagttcgggtatgctccatttaggctaagcttcatttactccatttaaggtttagatgcaagacatgt 19318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 506
Target Start/End: Complemental strand, 29474697 - 29474646
Alignment:
Q  455 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||| ||| ||||||||||||||| | |||||||||||||||||    
T  29474697 catttaggctaaactccatttactctatttagagcttggatgcaagacatgt 29474646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 2834500 - 2834433
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||| ||||||| | ||||||||||||| || ||||| || ||||||||||||||| ||| ||||||    
T  2834500 gagtttgggtatgctccatttaggctaagttccatttattccatttagggtttggatacaaaacatgt 2834433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 35363318 - 35363385
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | ||||||||||||| |  |||||||| |||||| |||| ||||||| ||||||    
T  35363318 gagttcgggtatgctccatttaggctaagtttcatttactccatttagagtttagatgcaacacatgt 35363385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 24883270 - 24883202
Alignment:
Q  438 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  24883270 ggagttcgggtatgttccatttaggctaagctccatttactccatttagggtttggatgcaagatatgt 24883202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 439 - 503
Target Start/End: Original strand, 24882971 - 24883035
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagaca 503  Q
    ||||||||||||| | |||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  24882971 gagttcgggtatgctccatttaggctaatctccatttactccatttagggtttggatgcaagaca 24883035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 440 - 506
Target Start/End: Original strand, 27171800 - 27171866
Alignment:
Q  440 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||| |||||||||||||||||  |||||||| ||||| |||||||||| |||||||||    
T  27171800 agttcgggtatgcttcatttaggctaagcttcatttactccatttatggtttggatgtaagacatgt 27171866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 506
Target Start/End: Original strand, 34969987 - 34970052
Alignment:
Q  441 gttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||| |||||||||| ||| ||| |||||||| ||||||| ||||||||||||||||||    
T  34969987 gttcgggtatgcttcatttaggttaaactccatttactcaatttaggatttggatgcaagacatgt 34970052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 446 - 506
Target Start/End: Complemental strand, 49777117 - 49777057
Alignment:
Q  446 ggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||| | |||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  49777117 ggtatgctccatttaggctaaactccatttattctatttagggtttggatgcaagacatgt 49777057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 3385308 - 3385375
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| |||||||||||||||||   ||||| | |||||||||||||||| |||||||||    
T  3385308 gagttcgggtatgcttcatttaggctaagcttcgtttaccccatttagggtttggatgtaagacatgt 3385375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 3385612 - 3385545
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | ||||||||| |||||| |||||||| |||||||||||||||| |||| ||||    
T  3385612 gagttcgggtatgctccatttaggccaagctccatttactccatttagggtttggatgtaagatatgt 3385545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 49776819 - 49776886
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | |||||| ||||||||  |||||||| ||||||| ||||||||||||||||||    
T  49776819 gagttcgggtatgctccatttaagctaagctttatttactccatttaggatttggatgcaagacatgt 49776886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 33401156 - 33401090
Alignment:
Q  440 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||| |||| | |||||||||||||||||||||||| |||||| ||||| |||| |||||||||    
T  33401156 agttcggatatgctacatttaggctaagctcaatttactttatttaaggtttagatgtaagacatgt 33401090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 506
Target Start/End: Complemental strand, 33156739 - 33156688
Alignment:
Q  455 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||||  |||||||| ||||||||||||||| ||||||||||    
T  33156739 catttaggctaagctttatttactccatttagggtttggatacaagacatgt 33156688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 34622626 - 34622559
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | ||||||| |||||||| | |||||| ||||| |||||| |||||||||||||    
T  34622626 gagttcgggtatgctccatttagactaagctccagttactccatttaaggtttgaatgcaagacatgt 34622559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 506
Target Start/End: Original strand, 39781073 - 39781137
Alignment:
Q  442 ttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||||||||||  |||| |  |||||||  |||||| |||||||||| ||||||||    
T  39781073 ttcgggtatgtttcatttagattaagtttcatttacttcatttagagtttggatgcgagacatgt 39781137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 430 - 506
Target Start/End: Original strand, 31193956 - 31194032
Alignment:
Q  430 ggggttgaggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||  ||||||||||||| | |||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  31193956 ggggttggtgagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgt 31194032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 31194266 - 31194199
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  31194266 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgt 31194199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 437 - 506
Target Start/End: Original strand, 36955301 - 36955370
Alignment:
Q  437 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | | |||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  36955301 aggagttcgggtaggctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgt 36955370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 14076971 - 14076903
Alignment:
Q  438 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||| |||| | ||||||||||||| || |||||||| ||||||||||||||||||||||||||    
T  14076971 ggagttcggatatgctccatttaggctaagttctatttactccatttagggtttggatgcaagacatgt 14076903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 17370067 - 17370134
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | |||||| ||||| ||| |||||||| ||||||||||||||||||||||||||    
T  17370067 gagttcgggtatgctccatttatgctaaactccatttactccatttagggtttggatgcaagacatgt 17370134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 455 - 506
Target Start/End: Complemental strand, 36955579 - 36955528
Alignment:
Q  455 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  36955579 catttaggctaagctctatttactctatttagggtttggttgcaagacatgt 36955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 8754658 - 8754725
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||  | ||||||| |||| ||| ||||||||||||||||||||||||| |||||||||    
T  8754658 gagttcgggtatcctccatttagactaaactccatttactctatttagggtttggatggaagacatgt 8754725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 506
Target Start/End: Original strand, 43449493 - 43449534
Alignment:
Q  465 aagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  43449493 aagctcaatttagtctatttaggctttggatgcaagacatgt 43449534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 506
Target Start/End: Complemental strand, 32347182 - 32347131
Alignment:
Q  455 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||||| | |||||| ||||| |||||||||| |||||||||    
T  32347182 catttaggctaagctccaattactccatttaaggtttggatgtaagacatgt 32347131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 506
Target Start/End: Complemental strand, 42546617 - 42546583
Alignment:
Q  472 atttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||| ||||||||||||||||||||||||||    
T  42546617 atttactccatttagggtttggatgcaagacatgt 42546583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 50544256 - 50544323
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||| |||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  50544256 gagttcggatatgctccatttaggctaagctccatttattctatttagggtttggatgcaagacatgt 50544323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 54316130 - 54316063
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||| |||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  54316130 gagtccgggtatgctccatttaggctaagctctatttactccatttagggtttggatgcaagacatgt 54316063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 7061972 - 7062039
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | |||||||||||| ||| |||||||| ||||| ||||||||||||||||||||    
T  7061972 gagttcgggtatgctccatttaggctaacctctatttactccatttatggtttggatgcaagacatgt 7062039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 455 - 503
Target Start/End: Original strand, 42475892 - 42475940
Alignment:
Q  455 catttaggctaagctcaatttactctatttagggtttggatgcaagaca 503  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  42475892 catttaggctaagcttcatttactctatttagggtttggatgcaagaca 42475940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 444 - 506
Target Start/End: Original strand, 46993072 - 46993134
Alignment:
Q  444 cgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||| | |||||||| ||||||| ||||| |||||||||||||||||||||||| ||||    
T  46993072 cgggtatgctccatttaggttaagctccatttattctatttagggtttggatgcaagatatgt 46993134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 504
Target Start/End: Complemental strand, 9551528 - 9551461
Alignment:
Q  437 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacat 504  Q
    ||||||||||||||| | ||||||| |||| ||| |||||||| |||||||| ||||||| |||||||    
T  9551528 aggagttcgggtatgctccatttagactaaactccatttactccatttagggcttggatggaagacat 9551461  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 11789859 - 11789926
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | ||||||||| |||||  |||||||| ||||||||||| ||||||||| ||||    
T  11789859 gagttcgggtatgctccatttaggcaaagcttcatttactccatttagggtttagatgcaagatatgt 11789926  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 439 - 506
Target Start/End: Complemental strand, 17915049 - 17914982
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||| |||| | ||||||||||||| || |||||||| |||||  |||||||||||||||||||    
T  17915049 gagttcggatatgctccatttaggctaagttccatttactccatttaaagtttggatgcaagacatgt 17914982  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 439 - 504
Target Start/End: Complemental strand, 24674022 - 24673957
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacat 504  Q
    |||||||| |||| | |||||||||||| ||  ||||||||||||||| ||||||||| |||||||    
T  24674022 gagttcggatatgctccatttaggctaaacttcatttactctatttagagtttggatgtaagacat 24673957  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 23655366 - 23655302
Alignment:
Q  442 ttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||| | |||||||| ||||||  ||||| || ||||||||||| ||||||||||||||    
T  23655366 ttcgggtatgctccatttaggttaagcttcatttattccatttagggtttagatgcaagacatgt 23655302  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 506
Target Start/End: Complemental strand, 5466122 - 5466083
Alignment:
Q  467 gctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  5466122 gctctatttactctatttagggtttggatgtaagacatgt 5466083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 498
Target Start/End: Complemental strand, 21785983 - 21785940
Alignment:
Q  455 catttaggctaagctcaatttactctatttagggtttggatgca 498  Q
    |||||||||||||||| |||||||| |||||| |||||||||||    
T  21785983 catttaggctaagctccatttactccatttagagtttggatgca 21785940  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 508
Target Start/End: Original strand, 3556382 - 3556435
Alignment:
Q  455 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgttg 508  Q
    |||||| ||||| ||  |||||||| ||||| ||||||||||||||||||||||    
T  3556382 catttaagctaaacttcatttactccatttaaggtttggatgcaagacatgttg 3556435  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 506
Target Start/End: Original strand, 5465855 - 5465920
Alignment:
Q  441 gttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||| | ||||||||||||| |  |||||||  ||||||||||| |||| |||||||||    
T  5465855 gttcgggtatgctccatttaggctaagtttcatttacttcatttagggtttagatgtaagacatgt 5465920  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 506
Target Start/End: Complemental strand, 8538401 - 8538361
Alignment:
Q  466 agctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||| ||||| || ||||||||||||||||||||||||||    
T  8538401 agctccatttagtccatttagggtttggatgcaagacatgt 8538361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 506
Target Start/End: Complemental strand, 51959773 - 51959733
Alignment:
Q  467 gctcaatttactctatttaggg-tttggatgcaagacatgt 506  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  51959773 gctcaatttagtctatttaggggtttggatgcaagacatgt 51959733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 8799317 - 8799384
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | ||||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  8799317 gagttcgggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgt 8799384  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 38499819 - 38499886
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  38499819 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatacaagacatgt 38499886  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 4041483 - 4041417
Alignment:
Q  440 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||| | |||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  4041483 agttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgt 4041417  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 38500123 - 38500055
Alignment:
Q  438 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||| | |||||||||||||||| |||||||| | |||||||||||||| |||||||||    
T  38500123 ggagttcgggtatgctccatttaggctaagctccatttactccaattagggtttggatgtaagacatgt 38500055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 506
Target Start/End: Complemental strand, 53197279 - 53197217
Alignment:
Q  444 cgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||| | |||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  53197279 cgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgt 53197217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 446 - 506
Target Start/End: Complemental strand, 43797646 - 43797586
Alignment:
Q  446 ggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  43797646 ggtatgctccatttaggctaagatccatttactctatttagggtttggatgaaagacatgt 43797586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 455 - 506
Target Start/End: Original strand, 43797368 - 43797419
Alignment:
Q  455 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  43797368 catttaggctaagctccatttactccatttaaggtttggatgcaagacatgt 43797419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 506
Target Start/End: Original strand, 53196987 - 53197055
Alignment:
Q  438 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||||   |||||| ||||| ||  |||||||||||||||||||||||||||| ||||||    
T  53196987 ggagttcgggtatgccccatttaagctaaacttcatttactctatttagggtttggatgcaaaacatgt 53197055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 506
Target Start/End: Complemental strand, 46883685 - 46883646
Alignment:
Q  467 gctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  46883685 gctccatttactccatttagggtttggatgcaagacatgt 46883646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 25349986 - 25349944
Alignment:
Q  464 taagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||    
T  25349986 taagctccatttattctatttagggtttggatgtaagacatgt 25349944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 43797941 - 43797875
Alignment:
Q  440 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||| |||||| |||||||  ||||||  | |||||||| |||||||| |||||||||||||||||    
T  43797941 agttcaggtatgcttcatttttgctaagtgctatttactccatttagggcttggatgcaagacatgt 43797875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 476
Target Start/End: Original strand, 29828685 - 29828722
Alignment:
Q  439 gagttcgggtatgtttcatttaggctaagctcaattta 476  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  29828685 gagttcgggtatgcttcatttaggctaagctccattta 29828722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 506
Target Start/End: Complemental strand, 48346281 - 48346213
Alignment:
Q  438 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||||| | |||||||| | || || ||||||| |||||||  ||||||||||| ||||||    
T  48346281 ggagttcgggtatgctccatttaggttgagttctatttactttatttagaatttggatgcaaaacatgt 48346213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 506
Target Start/End: Original strand, 22748586 - 22748655
Alignment:
Q  437 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    ||||||||||||||| |  |||||||||| |||| |||||||| ||||| | ||||||||||||||||||    
T  22748586 aggagttcgggtatgctcaatttaggctatgctccatttactccatttaagatttggatgcaagacatgt 22748655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 434 - 506
Target Start/End: Original strand, 16125517 - 16125589
Alignment:
Q  434 ttgaggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||| ||||||||||||| | |||||||||||| ||  ||||| |  ||||||||||||||||||||||||||    
T  16125517 ttgacgagttcgggtatgctccatttaggctaaacttcatttatttcatttagggtttggatgcaagacatgt 16125589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 506
Target Start/End: Original strand, 24197709 - 24197750
Alignment:
Q  465 aagctcaatttactctatttagggtttggatgcaagacatgt 506  Q
    |||||||||||| |||||||||  ||||||||||||||||||    
T  24197709 aagctcaatttagtctatttagactttggatgcaagacatgt 24197750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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