View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_high_14 (Length: 536)

Name: NF11668_high_14
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_high_14
NF11668_high_14
[»] chr5 (9 HSPs)
chr5 (12-454)||(23166125-23166579)
chr5 (480-526)||(23166605-23166651)
chr5 (390-437)||(5711788-5711835)
chr5 (390-437)||(9270337-9270384)
chr5 (391-437)||(10365201-10365247)
chr5 (391-437)||(38477487-38477533)
chr5 (390-437)||(14197703-14197750)
chr5 (394-437)||(19965002-19965045)
chr5 (390-436)||(14463675-14463721)
[»] chr2 (4 HSPs)
chr2 (390-438)||(43325367-43325415)
chr2 (390-434)||(43317705-43317749)
chr2 (394-437)||(5377571-5377614)
chr2 (390-437)||(35060418-35060466)
[»] scaffold0122 (1 HSPs)
scaffold0122 (390-437)||(11654-11701)
[»] chr7 (4 HSPs)
chr7 (390-437)||(8227126-8227173)
chr7 (390-437)||(19756514-19756561)
chr7 (389-438)||(11677725-11677774)
chr7 (390-438)||(9626466-9626514)
[»] chr6 (4 HSPs)
chr6 (390-437)||(19686633-19686680)
chr6 (390-437)||(26860218-26860265)
chr6 (390-437)||(29208377-29208424)
chr6 (394-438)||(15917644-15917688)
[»] chr3 (4 HSPs)
chr3 (390-437)||(43366226-43366273)
chr3 (390-436)||(15510664-15510710)
chr3 (390-433)||(24912602-24912645)
chr3 (394-437)||(32311608-32311651)
[»] chr1 (4 HSPs)
chr1 (390-437)||(24029817-24029864)
chr1 (390-437)||(45931651-45931698)
chr1 (391-437)||(46239898-46239944)
chr1 (390-435)||(9154531-9154576)
[»] chr4 (8 HSPs)
chr4 (390-436)||(54452030-54452076)
chr4 (394-437)||(5609544-5609587)
chr4 (390-437)||(11673961-11674008)
chr4 (390-437)||(24703295-24703342)
chr4 (391-437)||(418407-418453)
chr4 (396-437)||(21095458-21095499)
chr4 (392-437)||(30819948-30819993)
chr4 (390-438)||(13610732-13610780)
[»] chr8 (3 HSPs)
chr8 (390-437)||(12806282-12806329)
chr8 (390-437)||(24040952-24040999)
chr8 (390-437)||(39317322-39317369)


Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 454
Target Start/End: Original strand, 23166125 - 23166579
Alignment:
Q  12 tcatcacttaccccatcagttgattgattccctgactgtcactttattgatcctgccgggcacattgaaatcgtgtacatttcttcattcgcttccacca 111  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23166125 tcatctcttaccccatcagttgattgattccctgtctgtcactttattgatcctgccgggcacattgaaatcgtgtacatttcttcatttgcttccacca 23166224  T
Q  112 agagtgggnnnnnnnncttttgtatagtatatacattatgaattttctttccatcgaaagattcattttggaaggaaaagtaaggaagtagctacatcat 211  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23166225 agagtgggtttttta-cttttgtatagtatatacattatgaattttctttccatcgaaagattcattttggaaggaaaagtaaggaagtagctacatcat 23166323  T
Q  212 tgttgtcaaagtgagtagaattaaacaattaat-------------atgtgtattgtacatcattggttttgtatannnnnnncctcctaactttaggac 298  Q
    |||||||||||| ||||||||||||||||||||             ||||||||||||||||||||||||||||||       |||||||||||||||||    
T  23166324 tgttgtcaaagtcagtagaattaaacaattaatttttatatattatatgtgtattgtacatcattggttttgtatatttttttcctcctaactttaggac 23166423  T
Q  299 ttgattccttgtactctcctaggttatttgatcaaaggaattaaggaaaccctctattccccaaatgcttccatgtctttctggtgatagaaaaatggat 398  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23166424 ttgattccttgtactcttctaggttatttgatcaaaggaattaaggaaaccctctattccccaaatgcttccatgtctttctggggatagaaaaatggat 23166523  T
Q  399 ggattggatgaatatgaattttgatcctaatggatggatatttacgtgtgttattc 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23166524 ggattggatgaatatgaattttgatcctaatggatggatatttacgtgtgttattc 23166579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 480 - 526
Target Start/End: Original strand, 23166605 - 23166651
Alignment:
Q  480 atgaattcaatctaaatagattttggttattacatttcccacctatg 526  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  23166605 atgaattcaatctaaatagattttggttattacttttcccacctatg 23166651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 5711835 - 5711788
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||    
T  5711835 aaaatggatggattggatggatatggatttggatcctaatggatggat 5711788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 9270337 - 9270384
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  9270337 aaaatggatggattggatggatataaatttggatcctaatggatggat 9270384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 10365201 - 10365247
Alignment:
Q  391 aaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||    
T  10365201 aaatggatggattggatggatatggatttggatcctaatggatggat 10365247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 38477487 - 38477533
Alignment:
Q  391 aaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||    
T  38477487 aaatggatggattggatggatatggatttggatcctaatggatggat 38477533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 14197750 - 14197703
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| ||||| |||| |||| ||||||||||||    
T  14197750 aaaatggatggattggatggatatggatttggatcttaatggatggat 14197703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 437
Target Start/End: Original strand, 19965002 - 19965045
Alignment:
Q  394 tggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||    
T  19965002 tggatggattggatggatatgaatttggattctaatggatggat 19965045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 14463721 - 14463675
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatgga 436  Q
    |||||||||||||| |||| ||||| |||| ||||||||||||||||    
T  14463721 aaaatggatggatttgatggatatggatttggatcctaatggatgga 14463675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 43325415 - 43325367
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggata 438  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  43325415 aaaatggatggattggatgaatatggatttggattctaatggatggata 43325367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 43317705 - 43317749
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatg 434  Q
    ||||||||||||||||||||||||| |||| |||| |||||||||    
T  43317705 aaaatggatggattggatgaatatggatttggatcttaatggatg 43317749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 437
Target Start/End: Complemental strand, 5377614 - 5377571
Alignment:
Q  394 tggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||    
T  5377614 tggatggattggatggatatggatttggatcctaatggatggat 5377571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 35060466 - 35060418
Alignment:
Q  390 aaaatggatggattgg-atgaatatgaattttgatcctaatggatggat 437  Q
    |||||||||||||||| ||| ||||| |||| |||||||||||||||||    
T  35060466 aaaatggatggattgggatggatatggatttggatcctaatggatggat 35060418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 11654 - 11701
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    |||||||||||||||||||| |||| |||| |||||||||||||||||    
T  11654 aaaatggatggattggatgattatggatttggatcctaatggatggat 11701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 8227173 - 8227126
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||    
T  8227173 aaaatggatggattggatggatatggatttggatcctaatggatggat 8227126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 19756561 - 19756514
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| ||||  |||| |||||||||||||||||    
T  19756561 aaaatggatggattggatgtatatagatttggatcctaatggatggat 19756514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 11677774 - 11677725
Alignment:
Q  389 aaaaatggatggattggatgaatatgaattttgatcctaatggatggata 438  Q
    ||||||||| ||||||||||||||||||| | |||| ||||| |||||||    
T  11677774 aaaaatggaaggattggatgaatatgaatatagatcataatgaatggata 11677725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 9626466 - 9626514
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggata 438  Q
    ||||||||||||||||||| ||||| |||| |||| |||||||| ||||    
T  9626466 aaaatggatggattggatggatatggatttggatcttaatggattgata 9626514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 19686680 - 19686633
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  19686680 aaaatagatggattggatggatatgaatttggatcctaatggatggat 19686633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 26860265 - 26860218
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| ||||| |||| ||||||| |||||||||    
T  26860265 aaaatggatggattggatggatatggatttggatcctagtggatggat 26860218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 29208377 - 29208424
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    |||||||||||||| |||| ||||| |||| |||||||||||||||||    
T  29208377 aaaatggatggattagatggatatggatttagatcctaatggatggat 29208424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 15917644 - 15917688
Alignment:
Q  394 tggatggattggatgaatatgaattttgatcctaatggatggata 438  Q
    ||||||||||||||| |||||||||| ||||  ||||||||||||    
T  15917644 tggatggattggatggatatgaatttggatctgaatggatggata 15917688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 43366273 - 43366226
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||||    
T  43366273 aaaatggatggattggatggatatgaatttggatcataatggatggat 43366226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 15510664 - 15510710
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatgga 436  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  15510664 aaaatggatggattggatggatatggatttggatcctaatggatgga 15510710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 433
Target Start/End: Complemental strand, 24912645 - 24912602
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggat 433  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||    
T  24912645 aaaatggatggattggatggatatggatttggatcctaatggat 24912602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 437
Target Start/End: Original strand, 32311608 - 32311651
Alignment:
Q  394 tggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||    
T  32311608 tggatggattggatggatatggatttggatcctaatggatggat 32311651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 24029864 - 24029817
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||    
T  24029864 aaaatggatggattggatggatatggatttggatcctaatggatggat 24029817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 45931698 - 45931651
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||||    
T  45931698 aaaatggatggattggatggatatggatttggatcctaatggatggat 45931651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 46239898 - 46239944
Alignment:
Q  391 aaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||||||    
T  46239898 aaatggatgaattggatggatatggatttggatcctaatggatggat 46239944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 9154576 - 9154531
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatgg 435  Q
    ||||||||||||||| ||| ||||| |||| |||||||||||||||    
T  9154576 aaaatggatggattgaatggatatggatttggatcctaatggatgg 9154531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 54452030 - 54452076
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatgga 436  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  54452030 aaaatggatggattggatggatatggatttggatcctaatggatgga 54452076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 437
Target Start/End: Original strand, 5609544 - 5609587
Alignment:
Q  394 tggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||    
T  5609544 tggatggattggatggatatggatttggatcctaatggatggat 5609587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 11673961 - 11674008
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| ||||  |||| |||||||||||||||||    
T  11673961 aaaatggatggattggatggatatagatttggatcctaatggatggat 11674008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 24703342 - 24703295
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    |||||||||||||||||||  ||||||||| |||| ||||||||||||    
T  24703342 aaaatggatggattggatggttatgaatttggatcttaatggatggat 24703295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 418407 - 418453
Alignment:
Q  391 aaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    |||||||| ||||||||| ||||| |||| |||||||||||||||||    
T  418407 aaatggattgattggatggatatggatttggatcctaatggatggat 418453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 21095458 - 21095499
Alignment:
Q  396 gatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    |||||||||||||||||||||||| |||| |||| |||||||    
T  21095458 gatggattggatgaatatgaatttagatcataatagatggat 21095499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 30819993 - 30819948
Alignment:
Q  392 aatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    |||||||| |||||||| ||||| |||| |||||||||||||||||    
T  30819993 aatggatgaattggatggatatggatttggatcctaatggatggat 30819948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 13610780 - 13610732
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggata 438  Q
    ||||||||||||||||||| ||||| |||| |||| |||||||| ||||    
T  13610780 aaaatggatggattggatggatatggatttggatcttaatggattgata 13610732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 12806282 - 12806329
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    |||||||||||||| |||| ||||| |||| |||||||||||||||||    
T  12806282 aaaatggatggatttgatggatatggatttggatcctaatggatggat 12806329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 24040952 - 24040999
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| |||||||||| |||| ||||| ||||||    
T  24040952 aaaatggatggattggatggatatgaatttggatcttaatgaatggat 24040999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 39317322 - 39317369
Alignment:
Q  390 aaaatggatggattggatgaatatgaattttgatcctaatggatggat 437  Q
    ||||||||||||||||||| |||||||||| |||  ||||||||||||    
T  39317322 aaaatggatggattggatggatatgaatttggattttaatggatggat 39317369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University