View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_high_19 (Length: 451)

Name: NF11668_high_19
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_high_19
NF11668_high_19
[»] chr2 (11 HSPs)
chr2 (19-434)||(17316832-17317247)
chr2 (61-113)||(9140647-9140699)
chr2 (61-105)||(37419899-37419943)
chr2 (19-81)||(4027002-4027062)
chr2 (19-81)||(7480848-7480908)
chr2 (66-107)||(43796910-43796951)
chr2 (22-81)||(2401571-2401628)
chr2 (18-81)||(8832533-8832594)
chr2 (69-113)||(18276905-18276949)
chr2 (18-81)||(23956213-23956274)
chr2 (59-99)||(35997287-35997327)
[»] chr5 (17 HSPs)
chr5 (19-108)||(41419578-41419665)
chr5 (19-95)||(43268571-43268645)
chr5 (61-113)||(28625454-28625506)
chr5 (61-113)||(42706770-42706822)
chr5 (61-106)||(6144719-6144764)
chr5 (19-90)||(7364249-7364318)
chr5 (19-81)||(2878626-2878686)
chr5 (42-108)||(28357241-28357305)
chr5 (19-76)||(11912056-11912111)
chr5 (61-107)||(40696981-40697027)
chr5 (67-104)||(7984221-7984258)
chr5 (21-81)||(24030293-24030351)
chr5 (71-112)||(31637160-31637201)
chr5 (84-113)||(35536998-35537027)
chr5 (61-113)||(1942984-1943036)
chr5 (21-81)||(10537175-10537234)
chr5 (18-62)||(27805991-27806035)
[»] chr8 (12 HSPs)
chr8 (19-108)||(9130939-9131026)
chr8 (61-106)||(34286623-34286668)
chr8 (40-108)||(35168360-35168426)
chr8 (61-108)||(18396915-18396962)
chr8 (19-81)||(25333650-25333710)
chr8 (61-108)||(28879037-28879084)
chr8 (19-81)||(42363266-42363326)
chr8 (19-80)||(8752883-8752942)
chr8 (65-106)||(9781196-9781237)
chr8 (61-113)||(13265458-13265510)
chr8 (61-101)||(32213082-32213122)
chr8 (61-109)||(41145458-41145506)
[»] chr4 (19 HSPs)
chr4 (61-113)||(28663402-28663454)
chr4 (61-105)||(36740886-36740930)
chr4 (61-108)||(7148751-7148798)
chr4 (40-106)||(34633488-34633552)
chr4 (19-81)||(38345771-38345831)
chr4 (18-81)||(488333-488394)
chr4 (61-105)||(488444-488488)
chr4 (61-113)||(9319165-9319217)
chr4 (19-113)||(825759-825851)
chr4 (19-62)||(29877716-29877759)
chr4 (40-106)||(42697293-42697359)
chr4 (19-76)||(17222906-17222961)
chr4 (61-106)||(825663-825708)
chr4 (22-90)||(24101880-24101946)
chr4 (66-111)||(43136682-43136727)
chr4 (61-101)||(10046349-10046389)
chr4 (22-81)||(15179897-15179954)
chr4 (61-105)||(28074347-28074391)
chr4 (19-106)||(40699437-40699522)
[»] chr1 (13 HSPs)
chr1 (60-106)||(45267446-45267492)
chr1 (18-81)||(22593356-22593417)
chr1 (61-108)||(36178515-36178562)
chr1 (61-101)||(6337816-6337856)
chr1 (22-108)||(15631984-15632068)
chr1 (24-106)||(38781160-38781239)
chr1 (19-81)||(48819376-48819436)
chr1 (19-76)||(391252-391308)
chr1 (61-114)||(1005313-1005366)
chr1 (62-107)||(37431146-37431191)
chr1 (19-78)||(15515299-15515356)
chr1 (22-81)||(17814270-17814327)
chr1 (61-101)||(31378811-31378851)
[»] chr6 (7 HSPs)
chr6 (19-106)||(10874061-10874146)
chr6 (61-113)||(2034289-2034341)
chr6 (19-81)||(2255811-2255871)
chr6 (19-81)||(3829863-3829928)
chr6 (61-106)||(10755340-10755385)
chr6 (61-113)||(21025287-21025339)
chr6 (74-106)||(25430850-25430882)
[»] chr7 (8 HSPs)
chr7 (19-103)||(46744030-46744112)
chr7 (61-106)||(47511024-47511069)
chr7 (23-81)||(33204915-33204971)
chr7 (61-110)||(1054128-1054177)
chr7 (61-106)||(29378626-29378671)
chr7 (61-105)||(17944509-17944553)
chr7 (61-101)||(33288159-33288199)
chr7 (19-81)||(47582514-47582573)
[»] chr3 (12 HSPs)
chr3 (19-79)||(37778210-37778268)
chr3 (61-113)||(29270467-29270519)
chr3 (18-81)||(42956128-42956189)
chr3 (18-88)||(1516040-1516108)
chr3 (19-81)||(17752080-17752140)
chr3 (19-81)||(19053400-19053460)
chr3 (61-108)||(45331355-45331402)
chr3 (19-76)||(7124649-7124704)
chr3 (19-79)||(29830590-29830648)
chr3 (61-105)||(23555524-23555568)
chr3 (19-81)||(35127291-35127350)
chr3 (61-105)||(43079994-43080038)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 17317247 - 17316832
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccctcggta 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||    
T  17317247 aagatacaattattgttagtcagaacttatcaataaacataaaaaagcttatttatttacataagctcaaaaataagtcaatccaaacggacgctcagta 17317148  T
Q  119 aatacaaccatattaaccgaatattcattgtcactataatttggtatatagtcaatcgcgttctaaatgtttgcaaaattgtctttgaaattgaattata 218  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17317147 aacacaaccatattaaccgaatattcattgtcactataatttggtatatagtcaatcgcgttctaaatgtttgcaaaattgtctttgaaattgaattata 17317048  T
Q  219 ctgcaaaatgataggctaaaaccaagccatcaacacttgcattccaattgaaggcacgtcggtgtgacatcggccctcagtgaacacaaccatattaact 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17317047 ctgcaaaatgataggctaaaaccaagccatcaacacttgcattccaattgaaggcacgtcggtgtgacatcggccctcagtgaacacaaccatattaact 17316948  T
Q  319 caatattcattttgactatattttgatatatagtcaatcgcattctaaatgtttgtgaaattgtctctaaaattgatttatacgcaaaatgataagctaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17316947 caatattcattttgactatattttgatatatagtcaatcgcattctaaatgtttgtgaaattgtctctaaaattgatttatacgcaaaatgataagctaa 17316848  T
Q  419 gaccaagccatctctg 434  Q
    ||||||||||||||||    
T  17316847 gaccaagccatctctg 17316832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 9140699 - 9140647
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    ||||| |||||||| | |||| |||||||||||||||||||||||||| ||||    
T  9140699 aaaagtttatttatatgcataagctcaaaaataagtcaatccaaacgggccct 9140647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 37419943 - 37419899
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaa 105  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||    
T  37419943 aaaagcttatttatttgcataagctcaaaattaagtcaatccaaa 37419899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 4027002 - 4027062
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||||| |||||||| ||||||||| |||||||||  || ||||||||||||| ||||    
T  4027002 aagatacaatttttgttagtgagaacttatgaattaacat--aatagcttatttatttgcata 4027062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 7480908 - 7480848
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||||| |  ||||||||||||||| ||||||||||||||  ||||||||||| ||||    
T  7480908 aagatacaattttcattagtcagaacttatgaattaacataaaaa--cttatttatttgcata 7480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 43796951 - 43796910
Alignment:
Q  66 cttatttatttacatacgctcaaaaataagtcaatccaaacg 107  Q
    |||||||||||||||| |||| |||||||| |||||||||||    
T  43796951 cttatttatttacataagctctaaaataagccaatccaaacg 43796910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 2401628 - 2401571
Alignment:
Q  22 atacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    |||||||| ||||||||||||||||||  ||||| |||||||   |||||||||||||||    
T  2401628 atacaatttttgttagtcagaacttatagattaaaataaaaa--tttatttatttacata 2401571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 8832533 - 8832594
Alignment:
Q  18 aaagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    |||||||||||| | |||||| | ||||||| |||||||||  |||||||||||||||| ||||    
T  8832533 aaagatacaattttcgttagtgaaaacttatgaattaacat--aaaagcttatttatttgcata 8832594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 18276949 - 18276905
Alignment:
Q  69 atttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    |||||||| |||| |||||||||||||||||||||| ||| ||||    
T  18276949 atttatttgcataagctcaaaaataagtcaatccaagcgggccct 18276905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 23956274 - 23956213
Alignment:
Q  18 aaagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    |||||||||||| | |||| | ||||||||| ||||||||||||||  ||||||||||| ||||    
T  23956274 aaagatacaattttcgttaatgagaacttataaattaacataaaaa--cttatttatttgcata 23956213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 35997327 - 35997287
Alignment:
Q  59 aaaaaagcttatttatttacatacgctcaaaaataagtcaa 99  Q
    |||||| ||||||||||| |||| |||||||||||||||||    
T  35997327 aaaaaaacttatttatttgcataagctcaaaaataagtcaa 35997287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 41419578 - 41419665
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgg 108  Q
    ||||||||||| | |||||| ||||||||||||||||||||||||  ||||||||||| |||| |||||||| |||||||||||||||||    
T  41419578 aagatacaattttcgttagtgagaacttatcaattaacataaaaa--cttatttattttcataagctcaaaagtaagtcaatccaaacgg 41419665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 43268645 - 43268571
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataag 95  Q
    ||||||||||| |||||||| ||||||||| |||||||||  |||||||||||||||| |||| |||||||||||||    
T  43268645 aagatacaatttttgttagtgagaacttataaattaacat--aaaagcttatttattttcataagctcaaaaataag 43268571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 28625506 - 28625454
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    |||||||||||||||| |||| ||| |||||||||||||||||||||| ||||    
T  28625506 aaaagcttatttatttgcataagctaaaaaataagtcaatccaaacgggccct 28625454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 42706822 - 42706770
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    |||||||||||||||| |||| ||||||||||||| |||||||||||| ||||    
T  42706822 aaaagcttatttatttgcataagctcaaaaataagccaatccaaacgggccct 42706770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 6144764 - 6144719
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||||    
T  6144764 aaaagcttatttatttacatgagctcaaaaataagtcaatctaaac 6144719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 7364318 - 7364249
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaa 90  Q
    ||||||||||  |||||||| ||||||||| |||||| ||||||  |||||||||||| |||| ||||||||    
T  7364318 aagatacaatatttgttagtgagaacttatgaattaatataaaa--gcttatttatttgcataagctcaaaa 7364249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 2878686 - 2878626
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||||| |||||||| | ||||| | |||||||||  |||||||||||||||||||||    
T  2878686 aagatacaatttttgttagtgaaaacttttaaattaacat--aaaagcttatttatttacata 2878626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 28357241 - 28357305
Alignment:
Q  42 aacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgg 108  Q
    ||||||| |||||||||||||  |||||||||||| |||| ||| ||||||||| |||| |||||||    
T  28357241 aacttataaattaacataaaa--gcttatttatttgcataagctaaaaaataagccaatacaaacgg 28357305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 11912111 - 11912056
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttattt 76  Q
    ||||||||||| |||||||| ||||||||| |||||||||   |||||||||||||||    
T  11912111 aagatacaatttttgttagtgagaacttatgaattaacat--gaaagcttatttattt 11912056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 40697027 - 40696981
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacg 107  Q
    |||| ||||||||||| |||| |||||||||||||||||| ||||||    
T  40697027 aaaaacttatttatttgcataagctcaaaaataagtcaattcaaacg 40696981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 7984221 - 7984258
Alignment:
Q  67 ttatttatttacatacgctcaaaaataagtcaatccaa 104  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  7984221 ttatttatttacataagctaaaaaataagtcaatccaa 7984258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 24030293 - 24030351
Alignment:
Q  21 gatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||| | |||||| ||||||||| |||||||||  |||||||||||||||| ||||    
T  24030293 gatacaattttcgttagtgagaacttatgaattaacat--aaaagcttatttatttgcata 24030351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 31637160 - 31637201
Alignment:
Q  71 ttatttacatacgctcaaaaataagtcaatccaaacggaccc 112  Q
    |||||| |||| ||||| ||||||||||||||||||||||||    
T  31637160 ttatttgcataagctcataaataagtcaatccaaacggaccc 31637201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 35536998 - 35537027
Alignment:
Q  84 ctcaaaaataagtcaatccaaacggaccct 113  Q
    ||||||||||||||||||||||||||||||    
T  35536998 ctcaaaaataagtcaatccaaacggaccct 35537027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 1943036 - 1942984
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    |||| |||||||| || |||| ||||||||||||| ||||||||||| |||||    
T  1943036 aaaaacttatttacttgcataagctcaaaaataagccaatccaaacgtaccct 1942984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 10537234 - 10537175
Alignment:
Q  21 gatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||| | |||||| ||||||||| |||||||||| |||||||||| ||||| ||||    
T  10537234 gatacaattttcgttagtgagaacttatgaattaacata-aaaagcttatatatttgcata 10537175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27805991 - 27806035
Alignment:
Q  18 aaagatacaattattgttagtcagaacttatcaattaacataaaa 62  Q
    |||||||||||| |||||||| | ||||||| |||||||||||||    
T  27805991 aaagatacaatttttgttagtgaaaacttataaattaacataaaa 27806035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 9131026 - 9130939
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgg 108  Q
    ||||||||||| | ||||||| |||||||| |||||||||||||  | |||||||||| |||| ||||||||  ||||||||||||||||    
T  9131026 aagatacaattttcgttagtcggaacttatgaattaacataaaa--gtttatttatttgcataagctcaaaatcaagtcaatccaaacgg 9130939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 34286623 - 34286668
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  34286623 aaaagcttatttatttacataagctcaaaaataagtcaatccaaac 34286668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 35168426 - 35168360
Alignment:
Q  40 agaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgg 108  Q
    ||||||||| ||||||| |||||  ||| ||||||||||||| ||||||||||||| ||||||||||||    
T  35168426 agaacttatgaattaacttaaaa--gctgatttatttacataagctcaaaaataagccaatccaaacgg 35168360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 18396962 - 18396915
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgg 108  Q
    |||||||| ||||||| |||| ||||||||||||| ||||||||||||    
T  18396962 aaaagcttttttatttgcataagctcaaaaataagccaatccaaacgg 18396915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 25333710 - 25333650
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||||| | |||||| | ||||||| |||||||||  |||||||||||||||||||||    
T  25333710 aagatacaattttcgttagtgaaaacttatgaattaacat--aaaagcttatttatttacata 25333650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 28879084 - 28879037
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgg 108  Q
    |||||||||||||||| |||| ||||||||||||| |||| |||||||    
T  28879084 aaaagcttatttatttgcataagctcaaaaataagccaattcaaacgg 28879037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 42363326 - 42363266
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||||| |||||||| ||||||| | |||||| ||  |||||||||||||||||||||    
T  42363326 aagatacaatttttgttagtgagaacttttaaattaaaat--aaaagcttatttatttacata 42363266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 8752883 - 8752942
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacat 80  Q
    ||||||||| | ||||| || ||||||||| |||||||||  ||||||||||||||||||||    
T  8752883 aagatacaaattttgtttgtgagaacttatgaattaacat--aaaagcttatttatttacat 8752942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 9781237 - 9781196
Alignment:
Q  65 gcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    |||||||||||| |||| |||| |||||||||||||||||||    
T  9781237 gcttatttatttgcataagctctaaaataagtcaatccaaac 9781196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 13265510 - 13265458
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    |||||||||||||||| ||||  ||| |||| |||||||||||||| ||||||    
T  13265510 aaaagcttatttatttgcataaactcgaaaacaagtcaatccaaacagaccct 13265458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 32213082 - 32213122
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatc 101  Q
    |||||||||||||||| |||| ||| |||||||||||||||    
T  32213082 aaaagcttatttatttgcataagcttaaaaataagtcaatc 32213122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 41145458 - 41145506
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgga 109  Q
    |||||||||||||||| |||| ||||||||  | |||||||||||||||    
T  41145458 aaaagcttatttatttgcataagctcaaaatgatgtcaatccaaacgga 41145506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 28663454 - 28663402
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    ||||||| |||||||| |||| |||||||||||||||||||||||||||||||    
T  28663454 aaaagctcatttatttgcataagctcaaaaataagtcaatccaaacggaccct 28663402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 36740930 - 36740886
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaa 105  Q
    |||||||||||||||| |||| |||||||||||||||||||||||    
T  36740930 aaaagcttatttatttgcataagctcaaaaataagtcaatccaaa 36740886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 7148798 - 7148751
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgg 108  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||    
T  7148798 aaaagcttatttatttgcataagctcaaaaataagccaatccaaacgg 7148751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 34633488 - 34633552
Alignment:
Q  40 agaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    ||||||||| |||||||||||||  |||||||||||| | || ||| ||||||||||||||||||||    
T  34633488 agaacttatgaattaacataaaa--gcttatttatttgcgtaagcttaaaaataagtcaatccaaac 34633552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 38345831 - 38345771
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||||| || |||| |||||||||| |||||||||  |||||||||||||||||||||    
T  38345831 aagatacaatttttattagccagaacttatgaattaacat--aaaagcttatttatttacata 38345771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 488394 - 488333
Alignment:
Q  18 aaagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    |||||||||||| || ||||| ||||||||| |||||||||  |||||||||||||||| ||||    
T  488394 aaagatacaatttttattagtgagaacttatgaattaacat--aaaagcttatttatttccata 488333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 488444 - 488488
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaa 105  Q
    ||||||||| |||||| |||| |||||||||||||||||||||||    
T  488444 aaaagcttacttatttgcataagctcaaaaataagtcaatccaaa 488488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 9319165 - 9319217
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    ||||||||||||||||||||| ||| ||||||||| ||| |||||||| ||||    
T  9319165 aaaagcttatttatttacataagctaaaaaataagccaaaccaaacgggccct 9319217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 825759 - 825851
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    |||||||| || |||||||| | | ||||| |||||||||||||   ||||||||||| |||| ||| |||||| || |||||||||||| ||||    
T  825759 aagatacattttttgttagtgaaagcttatgaattaacataaaat--cttatttatttgcataagctaaaaaattagccaatccaaacgggccct 825851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 29877716 - 29877759
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaa 62  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||    
T  29877716 aagatacaatttttgttagtgagaacttatgaattaacataaaa 29877759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 42697359 - 42697293
Alignment:
Q  40 agaacttatcaattaacataaaaaagcttatttatttacatacgct-caaaaataagtcaatccaaac 106  Q
    ||||||||| |||||||||||||| |||||||||||| |||| |||  ||||||||| ||||||||||    
T  42697359 agaacttataaattaacataaaaa-gcttatttatttgcataagctaaaaaaataagccaatccaaac 42697293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 17222906 - 17222961
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttattt 76  Q
    ||||||||||| | |||||| ||||||||| ||||||||||||||  |||||||||||    
T  17222906 aagatacaattttcgttagttagaacttatgaattaacataaaaa--cttatttattt 17222961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 825708 - 825663
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    |||||||||||||||| |||| ||||||||| ||| ||||||||||    
T  825708 aaaagcttatttatttgcataagctcaaaaagaagccaatccaaac 825663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 24101946 - 24101880
Alignment:
Q  22 atacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaa 90  Q
    |||||||| ||||  || ||||||||| ||||||||||||||  ||||||||||| |||| ||||||||    
T  24101946 atacaatttttgtccgtgagaacttataaattaacataaaaa--cttatttatttgcataagctcaaaa 24101880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 43136682 - 43136727
Alignment:
Q  66 cttatttatttacatacgctcaaaaataagtcaatccaaacggacc 111  Q
    ||||||||||  |||| |||||||||||||||||||||||| ||||    
T  43136682 cttatttattcgcataagctcaaaaataagtcaatccaaacagacc 43136727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 10046349 - 10046389
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatc 101  Q
    ||||||||| ||||||||||| |||||||||||||| ||||    
T  10046349 aaaagcttaattatttacataagctcaaaaataagttaatc 10046389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 15179897 - 15179954
Alignment:
Q  22 atacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    |||||||| | ||||||||||||||||  ||||| ||  |||||||||||||||||||||    
T  15179897 atacaattttcgttagtcagaacttatagattaaaat--aaaagcttatttatttacata 15179954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 28074391 - 28074347
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaa 105  Q
    |||||||||||||||| |||| ||  |||||||||||||||||||    
T  28074391 aaaagcttatttatttgcataagcgaaaaaataagtcaatccaaa 28074347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 40699437 - 40699522
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    |||||||| || | || ||| ||||||||| |||||||||||||   ||||||| ||| |||| |||||||||||||| |||| ||||    
T  40699437 aagatacagttttcgtaagtgagaacttatgaattaacataaaat--cttatttgtttgcataagctcaaaaataagttaatcaaaac 40699522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 45267492 - 45267446
Alignment:
Q  60 aaaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||    
T  45267492 aaaaagcttatttatttgcataagctcaaaaataagtcaatccaaac 45267446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 22593417 - 22593356
Alignment:
Q  18 aaagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    |||||||||||| |||||||| ||||||||| |||||||||  |||||||||||||||| ||||    
T  22593417 aaagatacaatttttgttagtgagaacttataaattaacat--aaaagcttatttatttgcata 22593356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 36178562 - 36178515
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgg 108  Q
    |||||||||||||||| |||| |||||||| |||||||||||||||||    
T  36178562 aaaagcttatttatttgcataagctcaaaagtaagtcaatccaaacgg 36178515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 6337816 - 6337856
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatc 101  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  6337816 aaaagcttatttatttacataagctctaaaataagtcaatc 6337856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 15631984 - 15632068
Alignment:
Q  22 atacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgg 108  Q
    |||||||| | |||||| ||| | ||| |||||| |||||||  |||||||||||||||| ||||||||  || |||||||||||||    
T  15631984 atacaattttcgttagtgagagcatataaattaaaataaaaa--cttatttatttacataagctcaaaataaactcaatccaaacgg 15632068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 38781160 - 38781239
Alignment:
Q  24 acaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    |||||| | |||||| ||||||||| |||||||||  |||||| ||||||||| ||||  |||||||||||| ||||||||||    
T  38781160 acaattttggttagtgagaacttatgaattaacat--aaaagcatatttatttgcata-actcaaaaataagccaatccaaac 38781239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 48819376 - 48819436
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    |||||||| || |||||||| ||||||||| |||||||||  |||||||||||||||| ||||    
T  48819376 aagatacattttttgttagtgagaacttatgaattaacat--aaaagcttatttatttgcata 48819436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 391252 - 391308
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttattt 76  Q
    ||||||||||| | |||||  ||||||||| ||||||||| |||||||||||||||||    
T  391252 aagatacaattttcgttagcgagaacttatgaattaacat-aaaaagcttatttattt 391308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 1005366 - 1005313
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccctc 114  Q
    |||||||||||||||| |||| ||| ||||||||| |||| ||||||| |||||    
T  1005366 aaaagcttatttatttgcataagcttaaaaataagccaattcaaacgggccctc 1005313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 37431191 - 37431146
Alignment:
Q  62 aaagcttatttatttacatacgctcaaaaataagtcaatccaaacg 107  Q
    ||||||||||||||| || | ||||||||||||| |||||||||||    
T  37431191 aaagcttatttatttgcacaagctcaaaaataagccaatccaaacg 37431146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 15515356 - 15515299
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttac 78  Q
    ||||||||||| | |||||| ||||||||| |||||||||   |||||||||||||||||    
T  15515356 aagatacaattttcgttagtgagaacttatgaattaacat--gaaagcttatttatttac 15515299  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 17814270 - 17814327
Alignment:
Q  22 atacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    |||||||| | ||||||||||||||||  ||||| ||  |||||||||||||||||||||    
T  17814270 atacaattttcgttagtcagaacttatagattaaaat--aaaagcttatttatttacata 17814327  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 31378811 - 31378851
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatc 101  Q
    |||||||||||||||| |||| ||| |||||||||||||||    
T  31378811 aaaagcttatttatttgcataagcttaaaaataagtcaatc 31378851  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 10874061 - 10874146
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    ||||||||||| | ||| || | ||||||| |||||||||||||  |||||||||||| |||| ||| |||||||||||| |||||||    
T  10874061 aagatacaattttagttggtgaaaacttatgaattaacataaaa--gcttatttatttgcataagctaaaaaataagtcattccaaac 10874146  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 2034289 - 2034341
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    |||||||||||||||| |||| ||||||||| ||| |||||||||||| ||||    
T  2034289 aaaagcttatttatttgcataagctcaaaaacaagccaatccaaacgggccct 2034341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 2255811 - 2255871
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||||| ||| |||| ||||| ||| |||||||||  |||||||||||||||||||||    
T  2255811 aagatacaatttttggtagtgagaacatatgaattaacat--aaaagcttatttatttacata 2255871  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 3829928 - 3829863
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaa---aaagcttatttatttacata 81  Q
    |||||| |||| |||||| | ||||||||| ||||||||||||   ||||||||||||||||||||    
T  3829928 aagataaaatttttgttaataagaacttatgaattaacataaaattaaagcttatttatttacata 3829863  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 10755340 - 10755385
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    |||||||||||||||| |||| ||| ||||||||| ||||||||||    
T  10755340 aaaagcttatttatttgcataagctaaaaaataagccaatccaaac 10755385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 21025287 - 21025339
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    |||||||||||||||| |||| ||| |||||| || |||||||||||| ||||    
T  21025287 aaaagcttatttatttgcataagctaaaaaattagccaatccaaacgggccct 21025339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 25430850 - 25430882
Alignment:
Q  74 tttacatacgctcaaaaataagtcaatccaaac 106  Q
    |||||||| ||||||||||||||||||||||||    
T  25430850 tttacataagctcaaaaataagtcaatccaaac 25430882  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 46744030 - 46744112
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaaaaataagtcaatcca 103  Q
    ||||||||||| | |||||| ||||||||  |||||||||  |||||||||||||||| |||| |||  |||||||||| |||||    
T  46744030 aagatacaattttcgttagtgagaacttacgaattaacat--aaaagcttatttattttcataagctataaaataagtcgatcca 46744112  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 47511069 - 47511024
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||    
T  47511069 aaaagcttatttatttgcataagctcaaaaataagccaatccaaac 47511024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 33204915 - 33204971
Alignment:
Q  23 tacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||| |||||| ||||||||| |||||||||  |||||||||||||||| ||||    
T  33204915 tacaattatcgttagtgagaacttatgaattaacat--aaaagcttatttatttgcata 33204971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 1054128 - 1054177
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggac 110  Q
    |||||||||||||||| |||| |||||||| ||||| ||| |||||||||    
T  1054128 aaaagcttatttatttgcataagctcaaaactaagtgaatacaaacggac 1054177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 29378671 - 29378626
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaac 106  Q
    |||||||||||||||| |||| ||||||| ||||| ||||||||||    
T  29378671 aaaagcttatttatttgcataagctcaaagataagccaatccaaac 29378626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 17944553 - 17944509
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaa 105  Q
    |||||||||||||||| |||| |||||||||| || |||||||||    
T  17944553 aaaagcttatttatttgcataagctcaaaaattagccaatccaaa 17944509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 33288159 - 33288199
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatc 101  Q
    |||||||||||||||| |||| ||||||||||| |||||||    
T  33288159 aaaagcttatttatttgcataagctcaaaaatatgtcaatc 33288199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 47582573 - 47582514
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||||| |||||| ||||||||||| |||||| ||||||    |||||||||||||||    
T  47582573 aagatacaatttttgttaatcagaacttataaattaaaataaaa---tttatttatttacata 47582514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 37778210 - 37778268
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttaca 79  Q
    ||||||||||| |||||||| ||||||||| |||||| ||  |||||||||||||||||||    
T  37778210 aagatacaatttttgttagtgagaacttataaattaaaat--aaaagcttatttatttaca 37778268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 29270467 - 29270519
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacggaccct 113  Q
    |||||||||||||||| |||| ||| ||||||||| |||||||||| ||||||    
T  29270467 aaaagcttatttatttgcataagctaaaaaataagccaatccaaacagaccct 29270519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 42956189 - 42956128
Alignment:
Q  18 aaagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    |||||||||||| | |||||| ||||||||| ||||||||||||||  ||||||||||| ||||    
T  42956189 aaagatacaattttcgttagtgagaacttataaattaacataaaaa--cttatttatttgcata 42956128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 1516108 - 1516040
Alignment:
Q  18 aaagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacatacgctcaa 88  Q
    |||||||||||| |  ||||| ||||||||| |||||| |||||||  |||||||||||||||| ||||||    
T  1516108 aaagatacaattttcattagtgagaacttataaattaaaataaaaa--cttatttatttacataagctcaa 1516040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 17752140 - 17752080
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||||| | |||||| ||||||||| |||||||||  ||||| |||||||||||||||    
T  17752140 aagatacaattttcgttagtaagaacttataaattaacat--aaaagtttatttatttacata 17752080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 19053460 - 19053400
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||||||| | |||||| ||||||||| |||||||||  ||||| |||||||||||||||    
T  19053460 aagatacaattttcgttagtaagaacttataaattaacat--aaaagtttatttatttacata 19053400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 45331355 - 45331402
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaacgg 108  Q
    ||||| ||||||||||||||| ||| ||||||||| ||||||||||||    
T  45331355 aaaaggttatttatttacataagctaaaaaataagccaatccaaacgg 45331402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 7124704 - 7124649
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttattt 76  Q
    ||||||||||| |||||| | ||||||||||||||||||| ||||  |||||||||||    
T  7124704 aagatacaatttttgttaataagaacttatcaattaacatcaaaa--cttatttattt 7124649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 29830648 - 29830590
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttaca 79  Q
    ||||||||||| | |||||| ||||||||| |||||| |||||||  ||||||||||||||    
T  29830648 aagatacaattttcgttagtgagaacttataaattaaaataaaaa--cttatttatttaca 29830590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 23555524 - 23555568
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaa 105  Q
    |||||||||||||||| |||| ||||||||||||| |||| ||||    
T  23555524 aaaagcttatttatttgcataagctcaaaaataagccaatacaaa 23555568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 35127291 - 35127350
Alignment:
Q  19 aagatacaattattgttagtcagaacttatcaattaacataaaaaagcttatttatttacata 81  Q
    ||||||| ||| ||||||| |||||||||| |||||||||   ||||||||||||||| ||||    
T  35127291 aagataccatttttgttagccagaacttataaattaacat---aaagcttatttatttgcata 35127350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 43079994 - 43080038
Alignment:
Q  61 aaaagcttatttatttacatacgctcaaaaataagtcaatccaaa 105  Q
    |||||||||||||||| |||| ||| ||||||||| |||||||||    
T  43079994 aaaagcttatttatttgcataagctaaaaaataagacaatccaaa 43080038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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