View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11668_high_22 (Length: 441)
Name: NF11668_high_22
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 52856260 - 52855842
Alignment:
| Q |
1 |
cggtagatatctgctaattgcttgttcacgtcccagaactcaggtggcaaacctacagggtatatggaacaaagatgttgtgcctaaatgggagtatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52856260 |
cggtagatatctgctaattgcttgttcacgtcccggaactcaggtggcaaacctacagggtatatggaacaaagatgttgtgcctaaatgggagtatgtt |
52856161 |
T |
|
| Q |
101 |
ttcccttcactttccatcccccttctagtgataaataaatatgtaaaaggaaagtaaagagattaagttttatttgcttctagattctaaggtggcttag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52856160 |
ttcccttcactttccatcccccttctagtgataaataaatatgtaaaaggaaagtaaagagattaagttttatttgcttctagattctaaggtggcttag |
52856061 |
T |
|
| Q |
201 |
agtttctatatggatagggagtatcaaataaatatttagaagtaatttcttaaagaattgatgagaatttgtaatttgtctctcnnnnnnnnnnnnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52856060 |
agtttctatatggatagggagtatcaaataagtatttagaagtaatttcttaaagaattgatgagaatttgtaatttgtctct------ttttttttttt |
52855967 |
T |
|
| Q |
301 |
catccagtggggctccacacttgaacataaatcttcaaatgaattattggccgtccctttcttgcaacttacatgagtgtcaagagccaccatttgattg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52855966 |
catccagtggggctccacacttgaacataaatcttcaaatgaattattggccgtccctttcttgcaacttacatgagtgtcaagagccactatttgattg |
52855867 |
T |
|
| Q |
401 |
catttcctctttgtcagtcaatggt |
425 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
52855866 |
catttcctctttgtcagtcaatggt |
52855842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 6 - 415
Target Start/End: Complemental strand, 48487067 - 48486673
Alignment:
| Q |
6 |
gatatctgctaattgcttgttcacgtcccagaactcaggtggcaaacctacagggtatatggaacaaagatgttgtgcctaaatgggagtatgttttccc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||| |
|
|
| T |
48487067 |
gatatctgctaattgcttgttcacgtcctggaactcaggtggcaaacctacagggtatatggaacaataaagttgcacctgcatgggagtatgttttccc |
48486968 |
T |
|
| Q |
106 |
ttcactttccatcccccttctagtgataaataaatatgtaaaaggaaagtaaagagattaagttttatttgcttctagattctaaggtggcttagagttt |
205 |
Q |
| |
|
||| |||| ||||| ||||| || ||||||||||||||| |||||||||| ||| | || | | |||||||| ||||| ||| ||||| |
|
|
| T |
48486967 |
ttctcttttcatcctttctctagcaatgaataaatatgtaaaaacaaagtaaagaaattt-gattcaacagtttctagatcataagga---ttaaagttt |
48486872 |
T |
|
| Q |
206 |
ctatatggatagggagtatcaaataaatatttagaagtaatttcttaaagaattgatgagaatttgtaatttgtctctcnnnnnnnnnnnnnnnncatcc |
305 |
Q |
| |
|
||||||||||| ||||||| |||||| | ||||||||||||||||||||||| ||||| |||||||| | | | | | ||| |
|
|
| T |
48486871 |
ctatatggataaggagtatggaataaagacctagaagtaatttcttaaagaatttgtgagattttgtaatctcttttt-----------ttttgtcttcc |
48486783 |
T |
|
| Q |
306 |
agtggggctccacacttgaacataaatcttcaaatgaattattggccgtccctttcttgcaacttacatgagtgtcaagagccaccatttgattgcattt |
405 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
48486782 |
agtggggctcagcacttgaacataaatcttcaaatgaattattggccatctctttcttgcaacctacatgagtgtcaagagccattatttgattatattt |
48486683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University