View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_high_23 (Length: 413)
Name: NF11668_high_23
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_23 |
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| [»] scaffold0514 (1 HSPs) |
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| [»] scaffold0470 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Complemental strand, 6849962 - 6849571
Alignment:
| Q |
14 |
cttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggttacctatgtggatgttag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6849962 |
cttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggttacctatgtggatgttag |
6849863 |
T |
|
| Q |
114 |
caatagggatgtgtataactctcacaagtcttgctcnnnnnnnatataacatttgcaaatgagcacaccagatcctgttttcgaaaaagctaacaagttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6849862 |
caatagggatgtgtataactctcacaagtcttgctcttttttt-tataacatttgcaaatgagcacaccagatcctgttttcgaaaaagctaacaagttt |
6849764 |
T |
|
| Q |
214 |
cttgagaagttggtttttacttggattcgattgttatcaattcttggtttttgcctcacgataaggttggttatttggggagtggaatttttcctcaaca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6849763 |
cttgagaagttggtttttacttggattcgattgttatcaattcttggtttttgcctcacaataaggttggttatttggggagtggaatttttcctcaaca |
6849664 |
T |
|
| Q |
314 |
gaagtaagatggccatgactgaacaaaagagtacaaaggagatttcggtttagttgctagttttttaagaacttcattaattggtctctgctt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6849663 |
gaagtaagatggccatgactgaacaaaagagtacaaaggagatttcggtttagttgctagttttttaagaacttcattaattggtctttgctt |
6849571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 6841198 - 6841332
Alignment:
| Q |
14 |
cttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggttacctatgtggatgttag |
113 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| | ||||||| | ||| |
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| T |
6841198 |
cttatttccaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcctttaaatcacaggtttcttatgtggcttttat |
6841297 |
T |
|
| Q |
114 |
caatagggatgtgtataactctcacaagtcttgct |
148 |
Q |
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||||||||||||| | ||||||||||| |||||| |
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| T |
6841298 |
caatagggatgtgggtcactctcacaagccttgct |
6841332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 6595851 - 6595983
Alignment:
| Q |
14 |
cttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggttacctatgtggatgttag |
113 |
Q |
| |
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||||| || ||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| | ||||||| ||||| | ||||||| | ||| |
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| T |
6595851 |
cttatttcgaacacaatttgttttattgcatcactaagtgtttgtctcttgctggtgagtggaattcctatgcatcacaggtttcttatgtggcttttat |
6595950 |
T |
|
| Q |
114 |
caatagggatgtgtataactctcacaagtcttg |
146 |
Q |
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||||||||||||| | ||||||||||| |||| |
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| T |
6595951 |
caatagggatgtgggtcactctcacaagccttg |
6595983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 6621665 - 6621799
Alignment:
| Q |
14 |
cttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggttacctatgtggatgttag |
113 |
Q |
| |
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||||| || ||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| | ||||||| ||||| | ||||||| | ||| |
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| T |
6621665 |
cttatttcgaacacaatttgttttattgcatcactaagtgtttgtctcttgctggtgagtggaattcctatgcatcacaggtttcttatgtggcttttat |
6621764 |
T |
|
| Q |
114 |
caatagggatgtgtataactctcacaagtcttgct |
148 |
Q |
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|| |||||||||| | ||||||||||| |||||| |
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| T |
6621765 |
cattagggatgtgggtcactctcacaagccttgct |
6621799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 6632666 - 6632782
Alignment:
| Q |
23 |
aacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggttacctatgtggatgttagcaataggga |
122 |
Q |
| |
|
|||||||| ||||| |||||||||| ||| ||| ||||||||| ||||| ||||||||| ||||||||| |||||||| | || | ||||||| |
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| T |
6632666 |
aacacaatatgtttcattgcatcacttagtgttttactcttgcttaccagtggtattcgtttgagtcataggtttactatgtggcttgtatctataggga |
6632765 |
T |
|
| Q |
123 |
tgtgtataactctcaca |
139 |
Q |
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||||| | ||||||||| |
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| T |
6632766 |
tgtgtttcactctcaca |
6632782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 559 - 425
Alignment:
| Q |
14 |
cttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggttacctatgtggatgttag |
113 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| | ||||||| ||||| | ||||||| | ||| |
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| T |
559 |
cttatttcgaacacaatttgttttattgcatcactaagtgtttgtctcttgctggtgagtggaattcctatgcatcacaggtttcttatgtggcttttat |
460 |
T |
|
| Q |
114 |
caatagggatgtgtataactctcacaagtcttgct |
148 |
Q |
| |
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|| |||||||||| | ||||||||||| |||||| |
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|
| T |
459 |
cattagggatgtgggtcactctcacaagccttgct |
425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 11083 - 11217
Alignment:
| Q |
14 |
cttatatcaaacacaatttgttttgttgcatcactaagtatttgtctcttgcttgtgagtggaattcgtttgcatcataggttacctatgtggatgttag |
113 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| | ||||||| ||||| | ||||||| | ||| |
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| T |
11083 |
cttatttcgaacacaatttgttttattgcatcactaagtgtttgtctcttgctggtgagtggaattcctatgcatcacaggtttcttatgtggcttttat |
11182 |
T |
|
| Q |
114 |
caatagggatgtgtataactctcacaagtcttgct |
148 |
Q |
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|| |||||||||| | ||||||||||| |||||| |
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| T |
11183 |
cattagggatgtgggtcactctcacaagccttgct |
11217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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