View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_high_24 (Length: 400)
Name: NF11668_high_24
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 17726364 - 17726723
Alignment:
| Q |
1 |
caagctcagaaacgagcttgaagcagtagttttgacaatttggccatgttcgtgacccgatgcagaagccgccgccgtgaatatagtaaaagattggtag |
100 |
Q |
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| T |
17726364 |
caagctcagaagcgagcttgaagcagtagttttgacaatttggccatgttcgtgatccgatgcagaagccgccaccgtgaatgtagtaaaagattggtag |
17726463 |
T |
|
| Q |
101 |
ctttttggagggtgatgagttagctggcctatagagtcgaaggtgaagattgtgtgttgaggagaaaacgacatctttccataaaacagtgccgttgtct |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| |
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| T |
17726464 |
ctttttggagggtgatgagttagctggcttatagagtcgaaggtgaagattgtgtgttgaggagaaaacaacatctttccataaaacagtaccgctgtct |
17726563 |
T |
|
| Q |
201 |
tgaactgtgatgttgaaagctgggtttaacgtacgaactatggaaccgtcgttatagacataaagaacaccacgacactcatcaactatagtttttgaca |
300 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
17726564 |
tgaactgtgatgttgaaagctgggtttaaggttcgaactatggaaccgtcgttatagacatgaagaacaccacgacactcgtcaactatagtttttgaca |
17726663 |
T |
|
| Q |
301 |
tttttaagaagcaaagaaaatatgattaatgaaaatcactaaggttttggtgagtgtgtg |
360 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17726664 |
ttttttagaagcaaagaaaatatgattaatgaaaatcactaaggttttggtgagtgtgtg |
17726723 |
T |
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