View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_high_27 (Length: 388)
Name: NF11668_high_27
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 6443327 - 6442963
Alignment:
| Q |
19 |
ttattttggaaattttagtttgtgaaggatttggttaatggagaggcagagagtttctcaggactataacaaggaggagaagacatattcaacgagagca |
118 |
Q |
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| T |
6443327 |
ttattttagaaattttagtttgtgaaggatttggttaatggagaggcagagagtttctcaggactataacaaggaggagaagacatattcaacgagagca |
6443228 |
T |
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| Q |
119 |
taaattattatgaattttgtattttgtaccataagaatacaaagcagtaaaataacaggaattatactaactataagtctacaaacactaaatattcttc |
218 |
Q |
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| T |
6443227 |
taaattattatgaattttgtattttgtaccataagaatacaaagcagtaaaataacaggaattatactaacta-aagtctacaaacactaaatattcttc |
6443129 |
T |
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| Q |
219 |
catgctttagtcattagacaaaaggttacaaatataataacatatcctctaaagaatttggataatacattctatcactaacagatacatttcttagtaa |
318 |
Q |
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| T |
6443128 |
catgctttagtcattagacaaaaggttacaaatataataacatatcctctaaagaatttggataatacattctatcactaacagatacatttcttagtaa |
6443029 |
T |
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| Q |
319 |
ttcccact-----gatgctgactcagctagcagaggtgccttctagatctaagctggttttcttct |
379 |
Q |
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| T |
6443028 |
ttcccactgatgcgatgctgactcagctagcagaggtgccttctagatctaagctggttttcttct |
6442963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 254 - 379
Target Start/End: Complemental strand, 44098456 - 44098331
Alignment:
| Q |
254 |
aataacatatcctctaaagaatttggataatacattctatcactaacagatacatttcttagtaattcccactgatgctgactcagctagcagaggtgcc |
353 |
Q |
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| T |
44098456 |
aataatatatcctctaaagaatttggataatacattctgtctctaacacatacatttcttagtaattcccattgatgatgactcggctagcagaggtacc |
44098357 |
T |
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| Q |
354 |
ttctagatctaagctggttttcttct |
379 |
Q |
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| T |
44098356 |
ttctagatctaagttggctttcttct |
44098331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 48611093 - 48611003
Alignment:
| Q |
260 |
atatcctctaaagaatttggataatacattctatcactaacagatacatttcttagtaattcccactgatgctgactcagctagcagaggt |
350 |
Q |
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| T |
48611093 |
atatcctctaaagaatttggataatacattatgtctctaacacatacatttcttagtaatttccatcgatgatgactcagctagcaaaggt |
48611003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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