View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_high_28 (Length: 388)
Name: NF11668_high_28
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 45 - 369
Target Start/End: Complemental strand, 23231568 - 23231244
Alignment:
| Q |
45 |
agaagagagactcaaagattttcttgacattttgcttaatgtctttgaggagaaagaccttgaagtcaattttactagaagtcatatcaaatcattgatc |
144 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23231568 |
agaagagagactgaaagattttcttgacattttgcttaatgtctttgaggagaaagaccttgaagtcaattttactagaagtcatatcaaatcattgatc |
23231469 |
T |
|
| Q |
145 |
ttggtacatatacatcttctcatcatgtttattatgtttttatatggtcacaactacaaatccaactcatttttagaaatacacacaaaaatacacttaa |
244 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23231468 |
ttggtacatatacatcttctcctcatgtttattatgtttttatatggtcacaactacaaatccaactcatttttagaaatacacacaaaaatacacttaa |
23231369 |
T |
|
| Q |
245 |
accaatattttcaataataataacaacaataactaannnnnnnncctacatttttcacttctgatgtttatatctatcgattattgttgatatatatttc |
344 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23231368 |
accaatattttcaataataataacaacaataactaatttttatttctacagtttttacttttgatgtttatatctatcgattattgttgatatatatttc |
23231269 |
T |
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| Q |
345 |
aggattacttcacagcagctaccga |
369 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
23231268 |
aggattacttcacagcagctaccga |
23231244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 48602459 - 48602564
Alignment:
| Q |
45 |
agaagagagactcaaagattttcttgacattttgcttaatgtctttgaggagaaagaccttgaagtcaattttactagaagtcatatcaaatcattgatc |
144 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||| |||||||||| ||||||||||||||| || |
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| T |
48602459 |
agaagagagactgaaagattttcttgacattttgctagatgtctacagtgagaaagaccgtgaagtcaactttactagaaatcatatcaaatcattaata |
48602558 |
T |
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| Q |
145 |
ttggta |
150 |
Q |
| |
|
|||||| |
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| T |
48602559 |
ttggta |
48602564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 48592764 - 48592889
Alignment:
| Q |
45 |
agaagagagactcaaagattttcttgacattttgcttaatgtctttgaggagaaagaccttgaagtcaattttactagaagtcatatcaaatcattgatc |
144 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |||||| |||||| || ||||||||| |||||||||| ||||||||||||||| || |
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| T |
48592764 |
agaagagagactgaaagattttcttgacattttgctagatgtctacagtgagaaaaactgtgaagtcaactttactagaaatcatatcaaatcattaata |
48592863 |
T |
|
| Q |
145 |
ttggtacatatacatcttctcatcat |
170 |
Q |
| |
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||||||| |||| | |||||| |||| |
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| T |
48592864 |
ttggtacgtatataacttctcctcat |
48592889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 39413498 - 39413453
Alignment:
| Q |
225 |
acacacaaaaatacacttaaaccaatattttcaataataataacaa |
270 |
Q |
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|||||||| ||||||| | ||||||| ||||||||||||||||||| |
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| T |
39413498 |
acacacaacaatacacattaaccaatgttttcaataataataacaa |
39413453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 270
Target Start/End: Complemental strand, 29139539 - 29139494
Alignment:
| Q |
225 |
acacacaaaaatacacttaaaccaatattttcaataataataacaa |
270 |
Q |
| |
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|||||||| ||||||| | ||| ||||||||||||||||||||||| |
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| T |
29139539 |
acacacaacaatacacattaactaatattttcaataataataacaa |
29139494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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