View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_high_29 (Length: 383)
Name: NF11668_high_29
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 56378454 - 56378838
Alignment:
| Q |
1 |
ccacagcatgaggaaattcatgttacctcttcctgatcaggctcttggtcttggctaccaccaccaccactctattcctaatacagcatcagcagcagca |
100 |
Q |
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| T |
56378454 |
ccacagcatgaggaaattcatgttacctcttcctgatcaggctcttggtcttggctaccaccaccaccactctactcctaatacagcatcagcagcagca |
56378553 |
T |
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| Q |
101 |
acaggtaaca---acaacattcttccttctagagctgtagcgccacctcatggacatggccacatcatcatgccattcaactacaacataccttctgaat |
197 |
Q |
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| T |
56378554 |
acaggtaacaacaacaacattcttccttctagagctgtagcgccacctcatggacatggccacatcatcatgccattcaactacaacataccttctgaat |
56378653 |
T |
|
| Q |
198 |
ctgatgaacaagaagaggcagcaggtagactacatatg---------catcatcaacagcagcagcagcaggaggtagtgatgaagaaaaggttcaggac |
288 |
Q |
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| T |
56378654 |
ctgatgaacaagaagaggcagcaggtagactacatatgcatcatcatcatcatcaacagcagcagcagcaggaggtagtgatgaagaaaaggttcaggac |
56378753 |
T |
|
| Q |
289 |
aaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaaatttcaaaagcaagaggaatctgtg |
373 |
Q |
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| T |
56378754 |
aaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaaatttcaaaagcaagaggaatctgtg |
56378838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 2494418 - 2494351
Alignment:
| Q |
281 |
ttcaggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaagttggatggaa |
348 |
Q |
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| T |
2494418 |
ttcaggacaaagtttacacaagatcagaaggataagatgctgaaatttgctgagaaagttgggtggaa |
2494351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 14021574 - 14021521
Alignment:
| Q |
284 |
aggacaaaattcacacaggaacagaaggagaaaatgttgaactttgctgagaaa |
337 |
Q |
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| T |
14021574 |
aggacaaaattcacgcaggaacagaaggataagatgttggagttagctgagaaa |
14021521 |
T |
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