View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_high_38 (Length: 341)
Name: NF11668_high_38
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 32076620 - 32076950
Alignment:
| Q |
1 |
taagggttaggcggctatcatggtggtttgggagtaaaacttggaacacaacaaatggtggtgagtggaagtcatgccacttcaatcgctttgtgtaatt |
100 |
Q |
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| T |
32076620 |
taagggttgagcggctatcatggtggtttgggagtaaaacttggaacacaacaaatggtggtgagtggaagtcatgccacttcaatcgctttgtgtaatt |
32076719 |
T |
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| Q |
101 |
tcgctgtgaatatcatttcccttacataatatccacaatcacatccttttaaagatgtgattaaatgttagtaaaagaagacttgaaccataaatagtta |
200 |
Q |
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| T |
32076720 |
tcgctgtgaatatcatttcccttacataatatccacaatcacatccttttaaagatgtgattaaatgttagtaaaagaagacttgaaccataaatagtta |
32076819 |
T |
|
| Q |
201 |
ctataaagaatataaatatcttccataatgatatccatctctatctaagacatgaactaatgtaccttcctatttttaacaccacgtgtgaagaaaaagc |
300 |
Q |
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| T |
32076820 |
ctataaagaatgtaaatatcttccataatgatatccatctctatctaagacatgaactaatgtaccttcctatttttaacaccacatgtgaagaaaaagc |
32076919 |
T |
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| Q |
301 |
tcaaagaaacttaaaaacaagatggtctctg |
331 |
Q |
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| T |
32076920 |
tcaaagaaacttaaaaacaagatggtctctg |
32076950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 41518859 - 41518795
Alignment:
| Q |
11 |
gcggctatcatggtggtttgggagtaaaacttggaacacaacaaatggtggtgagtggaagtcat |
75 |
Q |
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| T |
41518859 |
gcggctatcacggtaggttgggagtaaaaattggaacacaataaatggtgatgagtggaaatcat |
41518795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 4850750 - 4850819
Alignment:
| Q |
11 |
gcggctatcatggtggtttgggagtaaaacttggaacacaacaaatggtggtgagtggaagtcatgccac |
80 |
Q |
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| T |
4850750 |
gcggctatcaaggtagtttgggagaaaaaattggaacacagtaaatgttggtgagtggaaatcatgccac |
4850819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 40790273 - 40790210
Alignment:
| Q |
19 |
catggtggtttgggagtaaaacttggaacacaacaaatggtggtgagtggaagtcatgccactt |
82 |
Q |
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| T |
40790273 |
catggtgggttagtagtaaagattggaacacaataaatggtggtgagtggagatcatgccactt |
40790210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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