View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_high_40 (Length: 335)
Name: NF11668_high_40
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 32085062 - 32084746
Alignment:
| Q |
1 |
cagacacaagagaggccaaatgagatgcctaaaagaaagatcatgactccaaagtactttagggattatgtcaaatcatctataagaaagccacaccttt |
100 |
Q |
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| T |
32085062 |
cagacacaagagaggccacatgagatgcctaaaagaaagatcatgtctccaaagtactttagggattatgtcaaatcatctataagaaagccacaccttt |
32084963 |
T |
|
| Q |
101 |
gcatttcctaatatattgatgtgattccagcattttcaaatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctct |
200 |
Q |
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| T |
32084962 |
gcatttcctaatatattgatgtgattccagcattttcaaatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctct |
32084863 |
T |
|
| Q |
201 |
agctatagcaaatttactcagttcctaatacttcggtattttcatcgagctaatctggaaactactcgttcaaaatccaccgctaataaaatggaagaag |
300 |
Q |
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| T |
32084862 |
agctatagcaaatttactcagttcctaatactttggtattttcatcgagctaatctggaaactactcgttcaaaatccaccgctaataaaatggaagaag |
32084763 |
T |
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| Q |
301 |
ccgttagcaaactcact |
317 |
Q |
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|| |||||||||||||| |
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| T |
32084762 |
ccattagcaaactcact |
32084746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 115 - 315
Target Start/End: Complemental strand, 32086411 - 32086213
Alignment:
| Q |
115 |
attgatgtgattccagcattttcaaatcaagcaagacttaaaatctcattatctatttccttcttaggaggttatattagccctctagctatagcaaatt |
214 |
Q |
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||||| || ||||||||||||| |||||||| |||| | |||| ||||||||| |||||||||||||||||| ||| ||| | |||| ||||||| |
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| T |
32086411 |
attgaagtaattccagcattttgaaatcaagaaagaatctaaatttcattatctttttccttcttaggaggttgc--tagtccttgaactattgcaaatt |
32086314 |
T |
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| Q |
215 |
tactcagttcctaatacttcggtattttcatcgagctaatctggaaactactcgttcaaaatccaccgctaataaaatggaagaagccgttagcaaactc |
314 |
Q |
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||| |||||||||| |||| ||| ||||||||| ||||||| ||||||| |||| ||| |||| || ||||||||||||||||| ||||||||||| |
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| T |
32086313 |
tacccagttcctaacactttggtgttttcatcgggctaatccaaaaactacatgttcgaaagccacagccgataaaatggaagaagccattagcaaactc |
32086214 |
T |
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