View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_high_43 (Length: 303)

Name: NF11668_high_43
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_high_43
NF11668_high_43
[»] chr7 (16 HSPs)
chr7 (16-144)||(27571412-27571540)
chr7 (151-275)||(27571757-27571881)
chr7 (201-284)||(41386872-41386955)
chr7 (157-245)||(45004886-45004974)
chr7 (183-284)||(36270907-36271008)
chr7 (222-282)||(40422758-40422819)
chr7 (201-269)||(5489918-5489986)
chr7 (212-284)||(40561815-40561887)
chr7 (179-267)||(41788241-41788327)
chr7 (20-100)||(27578818-27578898)
chr7 (196-284)||(40491518-40491606)
chr7 (212-271)||(45004976-45005035)
chr7 (202-271)||(40796046-40796115)
chr7 (189-245)||(12306667-12306723)
chr7 (236-284)||(15903587-15903635)
chr7 (214-274)||(44638514-44638574)
[»] scaffold0168 (1 HSPs)
scaffold0168 (157-284)||(31727-31854)
[»] chr4 (24 HSPs)
chr4 (157-271)||(2635064-2635178)
chr4 (157-282)||(35064964-35065089)
chr4 (163-280)||(46344893-46345009)
chr4 (155-270)||(47596366-47596482)
chr4 (157-284)||(50061685-50061819)
chr4 (198-284)||(25318989-25319076)
chr4 (157-284)||(16551858-16551985)
chr4 (157-204)||(33843592-33843639)
chr4 (157-267)||(29904133-29904243)
chr4 (179-250)||(471958-472030)
chr4 (212-264)||(33560648-33560700)
chr4 (236-280)||(41370071-41370115)
chr4 (157-220)||(21691341-21691404)
chr4 (228-283)||(33347228-33347283)
chr4 (192-243)||(42152979-42153030)
chr4 (177-220)||(49138956-49138999)
chr4 (252-283)||(55187020-55187051)
chr4 (186-264)||(30889305-30889383)
chr4 (230-284)||(32818427-32818481)
chr4 (231-284)||(30357487-30357540)
chr4 (212-284)||(54705447-54705520)
chr4 (216-264)||(18596999-18597047)
chr4 (178-250)||(20712572-20712644)
chr4 (213-269)||(55927842-55927898)
[»] chr3 (12 HSPs)
chr3 (157-268)||(35058261-35058373)
chr3 (157-271)||(38022338-38022451)
chr3 (157-284)||(1441438-1441565)
chr3 (157-262)||(48410891-48410996)
chr3 (157-257)||(3845196-3845296)
chr3 (157-284)||(25359631-25359757)
chr3 (213-262)||(48089468-48089517)
chr3 (157-206)||(52363966-52364015)
chr3 (163-271)||(5406813-5406921)
chr3 (230-284)||(7717378-7717432)
chr3 (157-206)||(1290682-1290731)
chr3 (157-206)||(20484103-20484152)
[»] chr6 (17 HSPs)
chr6 (157-270)||(1485217-1485331)
chr6 (157-283)||(5724688-5724814)
chr6 (157-271)||(25195434-25195548)
chr6 (157-264)||(33141784-33141890)
chr6 (184-284)||(26280533-26280633)
chr6 (177-250)||(33136574-33136647)
chr6 (213-284)||(6654147-6654218)
chr6 (195-284)||(765443-765532)
chr6 (157-284)||(4910809-4910936)
chr6 (157-223)||(34910904-34910970)
chr6 (214-282)||(2234272-2234341)
chr6 (178-280)||(10400756-10400859)
chr6 (231-280)||(993933-993982)
chr6 (255-284)||(14993077-14993106)
chr6 (192-284)||(7952766-7952858)
chr6 (163-271)||(34620793-34620901)
chr6 (163-271)||(34748230-34748338)
[»] chr8 (12 HSPs)
chr8 (197-284)||(32927833-32927920)
chr8 (157-284)||(44141107-44141241)
chr8 (192-282)||(37684341-37684431)
chr8 (226-269)||(10553598-10553641)
chr8 (157-264)||(32056266-32056372)
chr8 (195-281)||(7602166-7602252)
chr8 (183-264)||(4554261-4554342)
chr8 (177-271)||(35495181-35495275)
chr8 (186-267)||(26668482-26668563)
chr8 (195-271)||(35525351-35525427)
chr8 (157-277)||(39648209-39648329)
chr8 (197-269)||(42455853-42455925)
[»] chr1 (12 HSPs)
chr1 (183-273)||(24587836-24587926)
chr1 (183-250)||(4458503-4458570)
chr1 (184-266)||(9939803-9939885)
chr1 (236-284)||(50571264-50571312)
chr1 (212-271)||(37522980-37523039)
chr1 (183-284)||(6021728-6021832)
chr1 (178-263)||(31362279-31362364)
chr1 (212-275)||(1003778-1003841)
chr1 (177-264)||(15477826-15477913)
chr1 (231-284)||(7790699-7790752)
chr1 (158-267)||(47892462-47892570)
chr1 (212-282)||(34721899-34721966)
[»] chr5 (16 HSPs)
chr5 (160-272)||(10898626-10898739)
chr5 (157-264)||(7667958-7668066)
chr5 (183-269)||(34250423-34250509)
chr5 (188-284)||(14299262-14299358)
chr5 (231-283)||(27374349-27374401)
chr5 (169-284)||(18851139-18851254)
chr5 (157-220)||(39097165-39097228)
chr5 (183-264)||(10161753-10161834)
chr5 (157-269)||(5468675-5468786)
chr5 (163-283)||(11647989-11648109)
chr5 (178-261)||(29922816-29922899)
chr5 (254-284)||(6951362-6951392)
chr5 (197-283)||(31906200-31906286)
chr5 (157-271)||(36639839-36639952)
chr5 (212-261)||(29922582-29922631)
chr5 (157-206)||(38845646-38845695)
[»] chr2 (15 HSPs)
chr2 (157-243)||(33047650-33047736)
chr2 (183-266)||(37420272-37420355)
chr2 (214-283)||(26032093-26032162)
chr2 (193-284)||(10644541-10644631)
chr2 (183-284)||(2002752-2002853)
chr2 (186-264)||(3476507-3476587)
chr2 (212-284)||(11504118-11504190)
chr2 (183-280)||(33502909-33503007)
chr2 (157-270)||(6327140-6327248)
chr2 (196-280)||(36987172-36987257)
chr2 (155-220)||(40582648-40582713)
chr2 (183-243)||(15928532-15928592)
chr2 (182-250)||(16488272-16488340)
chr2 (192-284)||(16518715-16518807)
chr2 (158-206)||(16519348-16519396)
[»] scaffold0279 (1 HSPs)
scaffold0279 (20-100)||(3423-3503)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 27571412 - 27571540
Alignment:
Q  16 aaaaaatgtgtatgttttccttcaaccaatatagactttcgcagttttttagtgtaatagtgttttatgctcatgagtcatgacttcaaaggttgattct 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  27571412 aaaaaatgtgtatgttttccttcaaccaatatagacttttgcagttttttagtgtaatagtgttttatgctcatgagtcattacttcaaacgttgattct 27571511  T
Q  116 tcgagggaactactttttccctagttatg 144  Q
    | |||||||||||||||||||||||||||    
T  27571512 tggagggaactactttttccctagttatg 27571540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 27571757 - 27571881
Alignment:
Q  151 tgtatatggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctc 250  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  27571757 tgtatatggtttcacttctagagggaccaaatttgattcaagaggtgtagaattgactcctacatgtttgattgctctcgagtataattgattttacctc 27571856  T
Q  251 aagaattgattctacttgaagttag 275  Q
    |||||||||||||||||||||||||    
T  27571857 aagaattgattctacttgaagttag 27571881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 41386955 - 41386872
Alignment:
Q  201 aattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    |||||| ||| ||||||||||||||| | ||||||||||||||| ||||  |||||||||||||||||||| ||||||||||||    
T  41386955 aattgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtag 41386872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 45004886 - 45004974
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgatttt 245  Q
    ||||||||||| || | || ||||| |||||||||||||||||||||||| | | ||||||||| || ||||  |||||||||||||||    
T  45004886 tggtttcacttctaaaagggccaaaattgattctagaggtgtagaattgattttgacatgtttggttactctctagtataattgatttt 45004974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 36270907 - 36271008
Alignment:
Q  183 ttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgt 282  Q
    ||||||||||||||||  |||||| | |   ||||||| || ||||  |||| |||||||||| |||| |||||| ||||||||||||||| ||||||||    
T  36270907 ttgattctagaggtgtgaaattgattttgtgatgtttggtttctctctagtagaattgattttgcctctagaatttattctacttgaagttgggatttgt 36271006  T
Q  283 ag 284  Q
    ||    
T  36271007 ag 36271008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 40422758 - 40422819
Alignment:
Q  222 ttgctcttgagtataattgattttacctcaagaattgattct-acttgaagttaggatttgt 282  Q
    |||||||  |||| |||||||||| ||||||||||||||||| |||||||||||||||||||    
T  40422758 ttgctctcaagtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgt 40422819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 5489986 - 5489918
Alignment:
Q  201 aattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttga 269  Q
    |||||| ||||||||||||| |||||| |||||| |||| ||||| |||| | ||||||||||||||||    
T  5489986 aattgattcttacatgtttggttgctcctgagtagaattaattttgcctccaaaattgattctacttga 5489918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 40561887 - 40561815
Alignment:
Q  212 acatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    ||||||||| ||  ||| |||||||||| ||||| | ||||||||||||||||||||||||||| | ||||||    
T  40561887 acatgtttggttcatctagagtataatttatttttcttcaagaattgattctacttgaagttagaaattgtag 40561815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 41788241 - 41788327
Alignment:
Q  179 aaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctactt 267  Q
    |||||||||||||||  | ||||||||| | |  |||||||| ||||||||||||| || ||||| |  ||||||||||||||||||||    
T  41788241 aaatttgattctagaaatatagaattgattttggcatgtttggttgctcttgagtagaaatgattgt--ctcaagaattgattctactt 41788327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 27578818 - 27578898
Alignment:
Q  20 aatgtgtatgttttccttcaaccaatatagactttcgcagttttttagtgtaatagtgttttatgctcatgagtcatgact 100  Q
    |||||||| |||||| ||||||||||||||| |||| |    |||||||| ||||| ||||||||||||| ||||| ||||    
T  27578818 aatgtgtaagttttctttcaaccaatatagattttcaccaaattttagtgcaatagcgttttatgctcataagtcacgact 27578898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 40491518 - 40491606
Alignment:
Q  196 tgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    ||||||||||| ||| ||||| ||| ||||| | ||  |||||||||||| |||  |||||||| |||||||||||||| | |||||||    
T  40491518 tgtagaattgattctaacatggttggttgctttcgaagataattgattttgccttcagaattgactctacttgaagttaagttttgtag 40491606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 45004976 - 45005035
Alignment:
Q  212 acatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaag 271  Q
    ||||||||| ||||||| || || |||||||||| |||  ||||||||||||||||||||    
T  45004976 acatgtttggttgctctcgaatagaattgattttgccttcagaattgattctacttgaag 45005035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 40796115 - 40796046
Alignment:
Q  202 attgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaag 271  Q
    ||||| ||| ||||||||| ||||||| ||| | |||||||||| |||| || ||| |||||||||||||    
T  40796115 attgattctgacatgtttggttgctctcgagcaaaattgattttgcctccagtatttattctacttgaag 40796046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 12306667 - 12306723
Alignment:
Q  189 ctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgatttt 245  Q
    |||||||||||||||||| | | ||||||||| |||||||  |||| ||||||||||    
T  12306667 ctagaggtgtagaattgattttgacatgtttggttgctctcaagtagaattgatttt 12306723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 15903635 - 15903587
Alignment:
Q  236 aattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    |||||||||| |||| | |||||||| ||||||||||| ||||||||||    
T  15903635 aattgattttgcctccaaaattgattatacttgaagttgggatttgtag 15903587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 44638574 - 44638514
Alignment:
Q  214 atgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagtta 274  Q
    ||||||||||| | || |||| |||||||||| | |||||||| |||||| ||||||||||    
T  44638574 atgtttgattgttttttagtaaaattgattttgcttcaagaatcgattcttcttgaagtta 44638514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 284
Target Start/End: Original strand, 31727 - 31854
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| ||||| ||||| ||||||| |||||||||||||||||||||||| ||| ||||||||| ||| | | ||||| |||||||| | |||| | |||    
T  31727 tggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgcctccaaaat 31826  T
Q  257 tgattctacttgaagttaggatttgtag 284  Q
    ||||| ||||||||| ||||||||||||    
T  31827 tgattatacttgaagctaggatttgtag 31854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 2635064 - 2635178
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| |||||| | | ||||||||||||||| || |||| || ||||||| |||| |||||    
T  2635064 tggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgcctccagaat 2635163  T
Q  257 tgattctacttgaag 271  Q
    ||||| | |||||||    
T  2635164 tgattatgcttgaag 2635178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 35064964 - 35065089
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| ||||| | |||||  |||| |||||| | ||||||||||||||| | | |||| |||| ||||| | ||||| |||||||||| |||||| |||    
T  35064964 tggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattttgcctcaataat 35065063  T
Q  257 tgattctacttgaagttaggatttgt 282  Q
    ||||| ||||||||| ||| ||||||    
T  35065064 tgattttacttgaagctagtatttgt 35065089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 46345009 - 46344893
Alignment:
Q  163 cacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattc 262  Q
    ||||| ||||||| ||||| |||||| | |||||||| |||| | ||| ||||||||| ||||| |  ||||||||||||||| |||| | |||| ||||    
T  46345009 cacttctagagggcccaaaattgattatggaggtgtataattaattctgacatgtttggttgctttcaagtataattgattttgcctccataatt-attc 46344911  T
Q  263 tacttgaagttaggattt 280  Q
    ||||||||||||| ||||    
T  46344910 tacttgaagttagaattt 46344893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 47596482 - 47596366
Alignment:
Q  155 tatggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactctt-acatgtttgattgctcttgagtataattgattttacctcaag 253  Q
    ||||||||||||||| |||| | |||| |||||| || ||||| |||||||| | || |||||||||||| |||| |||||||||| ||||||  |  ||    
T  47596482 tatggtttcacttttggaggaatcaaaattgattttaaaggtggagaattgattgttgacatgtttgatttctctagagtataattaattttatttatag 47596383  T
Q  254 aattgattctacttgaa 270  Q
    | |||||||||||||||    
T  47596382 agttgattctacttgaa 47596366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 50061819 - 50061685
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactctta-------catgtttgattgctcttgagtataattgattttacct 249  Q
    ||||| ||||| |||||| |||||| |||||||| ||||| ||||||||| ||| |       ||||| |||||| | |  |||| |||||||||| |||    
T  50061819 tggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcct 50061720  T
Q  250 caagaattgattctacttgaagttaggatttgtag 284  Q
    | | |||||||||||||||||||||||||||||||    
T  50061719 ccaaaattgattctacttgaagttaggatttgtag 50061685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 25318989 - 25319076
Alignment:
Q  198 tagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattct-acttgaagttaggatttgtag 284  Q
    ||||||||| | | ||||||||| ||||||| ||||| ||||||||||  ||| |||||||||||| |||||||| ||||||||||||    
T  25318989 tagaattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtag 25319076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 284
Target Start/End: Original strand, 16551858 - 16551985
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| |||||| |||| || |||| |||||| ||||||||||||||||| ||| |||||| || ||||| | || || |  ||||| | |||| || ||    
T  16551858 tggttccactttcagagagatcaaaattgattttagaggtgtagaattgattctgacatgtatggttgctgtcgaatagagctgattctgcctctaggat 16551957  T
Q  257 tgattctacttgaagttaggatttgtag 284  Q
     |||||| ||||||| ||||||||||||    
T  16551958 ggattctccttgaagctaggatttgtag 16551985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 33843592 - 33843639
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaatt 204  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  33843592 tggtttcacttctagagggtccaaaattgattctagaggtgtagaatt 33843639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 29904133 - 29904243
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||||||||| ||||||  ||| | |||||||||||| | || |||||| ||| |||||||||||||  || |   |||| ||| ||| ||||||||||    
T  29904133 tggtttcacttctagaggatccacaattgattctagagatataaaattgattctaacatgtttgattggcctcggacataactgaatttgcctcaagaat 29904232  T
Q  257 tgattctactt 267  Q
    |||||||||||    
T  29904233 tgattctactt 29904243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 472030 - 471958
Alignment:
Q  179 aaatttgattctagaggtgtagaattgactctt-acatgtttgattgctcttgagtataattgattttacctc 250  Q
    ||||||||||||||| |||||||||||| | || |||||||||| || | | ||||| |||||||||||||||    
T  472030 aaatttgattctagaagtgtagaattgatttttgacatgtttgaatgttgtcgagtagaattgattttacctc 471958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Complemental strand, 33560700 - 33560648
Alignment:
Q  212 acatgtttgattgctcttgagtataattgattttacctcaagaattgattcta 264  Q
    ||||||||| ||||||| ||||| |||||||||| |||| |||||||||||||    
T  33560700 acatgtttggttgctctcgagtagaattgattttgcctctagaattgattcta 33560648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 41370115 - 41370071
Alignment:
Q  236 aattgattttacctcaagaattgattctacttgaagttaggattt 280  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||||    
T  41370115 aattgattttaactctagagttgattctacttgaagttaggattt 41370071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 21691404 - 21691341
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttg 220  Q
    ||||| ||||| ||||||||||| | |||||||| ||||||||||||||| ||| |||| ||||    
T  21691404 tggttccacttctagagggaccagaattgattctggaggtgtagaattgattctgacatatttg 21691341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 33347283 - 33347228
Alignment:
Q  228 ttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgta 283  Q
    |||||||||| | ||||| |||| |||||| ||||||||||||| |||||||||||    
T  33347283 ttgagtataagtaattttgcctctagaattaattctacttgaaggtaggatttgta 33347228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 42153030 - 42152979
Alignment:
Q  192 gaggtgtagaattgactcttacatgtttgattgctcttgagtataattgatt 243  Q
    ||||||||||||| | | | ||||||||||||||||||||||| ||||||||    
T  42153030 gaggtgtagaatttattttgacatgtttgattgctcttgagtagaattgatt 42152979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 49138999 - 49138956
Alignment:
Q  177 ccaaatttgattctagaggtgtagaattgactcttacatgtttg 220  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||    
T  49138999 ccaaaattgattctagaggtgtagaattgattctgacatgtttg 49138956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 283
Target Start/End: Complemental strand, 55187051 - 55187020
Alignment:
Q  252 agaattgattctacttgaagttaggatttgta 283  Q
    ||||||||||||||||||||||||||||||||    
T  55187051 agaattgattctacttgaagttaggatttgta 55187020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 30889305 - 30889383
Alignment:
Q  186 attctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattcta 264  Q
    ||||| || |||||||||||| | |  ||||||| ||||||||| | ||||||||| |||||||| | |||||||||||    
T  30889305 attctggatgtgtagaattgattttgtcatgtttaattgctctttaatataattgaatttacctctaaaattgattcta 30889383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 32818481 - 32818427
Alignment:
Q  230 gagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    ||||| |||||||||| |||| ||||||||||||| |||||| ||| ||||||||    
T  32818481 gagtagaattgattttgcctccagaattgattctatttgaagctagaatttgtag 32818427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 30357487 - 30357540
Alignment:
Q  231 agtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    |||||||||||||||| ||  |||||||||||||||||||| |  |||||||||    
T  30357487 agtataattgattttatctttagaattgattctacttgaagctgtgatttgtag 30357540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 54705520 - 54705447
Alignment:
Q  212 acatgtttgattgctcttgagtataattgattttacctcaagaattgattct-acttgaagttaggatttgtag 284  Q
    ||||||||| ||||||   ||||||||||||||| |||||| ||||||| || |||||||| |||| |||||||    
T  54705520 acatgtttggttgctcacaagtataattgattttgcctcaataattgatactaacttgaagctagggtttgtag 54705447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 18596999 - 18597047
Alignment:
Q  216 gtttgattgctcttgagtataattgattttacctcaagaattgattcta 264  Q
    |||||||| ||||  |||| ||||||||||||||| |||||||||||||    
T  18596999 gtttgatttctctcaagtaaaattgattttacctccagaattgattcta 18597047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 20712572 - 20712644
Alignment:
Q  178 caaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctc 250  Q
    |||| |||||||||||||| ||||||||| | ||||||| ||| |||||||  | || |||||||||| ||||    
T  20712572 caaaattgattctagaggtttagaattgatttttacatgcttgtttgctctcaaatagaattgattttgcctc 20712644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 55927898 - 55927842
Alignment:
Q  213 catgtttgattgctcttgagtataattgattttacctcaagaattgattctacttga 269  Q
    ||||||||||| ||||  ||||||||||||||| |||  ||||||||||| ||||||    
T  55927898 catgtttgattcctctaaagtataattgattttgccttcagaattgattccacttga 55927842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 157 - 268
Target Start/End: Original strand, 35058261 - 35058373
Alignment:
Q  157 tggtttcacttttagagggaccaaatttg-attctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaa 255  Q
    ||||||||||| | ||||||||||| ||| ||||||||| ||||||| ||  ||| ||||||||||| ||||| ||||| |||||||||| |||||||||    
T  35058261 tggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctctcgagtagaattgattttgcctcaagaa 35058360  T
Q  256 ttgattctacttg 268  Q
    |||||||||||||    
T  35058361 ttgattctacttg 35058373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 38022338 - 38022451
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattga-ttttacctcaagaa 255  Q
    ||||||||||| |||| |||||||| ||||||||||| |||||||||||| | |  |||||||||||||||   |||| |||||| |||| |||| | ||    
T  38022338 tggtttcacttctagaaggaccaaagttgattctagaagtgtagaattgattttggcatgtttgattgctc--aagtagaattgatttttgcctccaaaa 38022435  T
Q  256 ttgattctacttgaag 271  Q
    |||||||||| |||||    
T  38022436 ttgattctacctgaag 38022451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 1441565 - 1441438
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| ||||||| |||  |||||| ||  |||||||||||||||||||| | | ||||||||| || || ||||||| ||||||||||  ||| | |||    
T  1441565 tggttccacttttggagtaaccaaaattatttctagaggtgtagaattgagtttgacatgtttggtttcttttgagtagaattgattttgtctctataat 1441466  T
Q  257 tgattctacttgaagttaggatttgtag 284  Q
     || ||||||||||  ||||||||||||    
T  1441465 cgactctacttgaaactaggatttgtag 1441438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 48410996 - 48410891
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| |||||||||||||  || | ||||||||| | |||| ||||||| ||| | ||||||||||||| | ||||| |||||||||| |||| | |||    
T  48410996 tggttacacttttagaggggtcagaattgattctataagtgtggaattgattctgagatgtttgattgctttcgagtagaattgattttgcctccaaaat 48410897  T
Q  257 tgattc 262  Q
    ||||||    
T  48410896 tgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 3845296 - 3845196
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| ||||||| |||  |||||| |||||||||||||||||||||||| | | ||||||||| ||| |||  |||| |||||||| | |||| |||||    
T  3845296 tggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattgattctgcctctagaat 3845197  T
Q  257 t 257  Q
    |    
T  3845196 t 3845196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 25359757 - 25359631
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| ||||||||||| | ||| | |||||| | ||||| ||||||||  |||  |||||||| ||||| |  | || |||||||| | |||| |||||    
T  25359757 tggttccacttttagagtggccagaattgattatggaggtatagaattgcttctaccatgtttggttgctgtcaaata-aattgattctgcctccagaat 25359659  T
Q  257 tgattctacttgaagttaggatttgtag 284  Q
    ||||||||||||||||||| ||||||||    
T  25359658 tgattctacttgaagttagaatttgtag 25359631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 48089517 - 48089468
Alignment:
Q  213 catgtttgattgctcttgagtataattgattttacctcaagaattgattc 262  Q
    |||||||| ||||||| |||||||||| ||||| ||||||||||||||||    
T  48089517 catgtttggttgctctcgagtataattaattttgcctcaagaattgattc 48089468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 52363966 - 52364015
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattga 206  Q
    ||||| ||||||||||||||||||| |||||| |||||||||| ||||||    
T  52363966 tggttccacttttagagggaccaaaattgattatagaggtgtataattga 52364015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 5406813 - 5406921
Alignment:
Q  163 cacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattc 262  Q
    ||||||| ||||  |||||  ||||||||||||| ||||||||| | ||   |||||| || ||||  ||||||||||||||| |||| ||||| |||||    
T  5406813 cacttttggaggagccaaaaatgattctagaggtctagaattgatttttctgtgtttggttcctctaaagtataattgattttgcctctagaatggattc 5406912  T
Q  263 tacttgaag 271  Q
    |||| ||||    
T  5406913 tactcgaag 5406921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 7717432 - 7717378
Alignment:
Q  230 gagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    ||||| |||||||||| |||| |||||||||||||||||||| ||| | ||||||    
T  7717432 gagtagaattgattttgcctccagaattgattctacttgaagctagaaattgtag 7717378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 1290682 - 1290731
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattga 206  Q
    ||||| ||||| |||||| || ||| ||||||||||||||||||||||||    
T  1290682 tggttccacttctagaggaactaaaattgattctagaggtgtagaattga 1290731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 20484152 - 20484103
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattga 206  Q
    |||||||| |||| ||||  ||||||||||||||| ||||||||||||||    
T  20484152 tggtttcaattttggaggatccaaatttgattctacaggtgtagaattga 20484103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 270
Target Start/End: Complemental strand, 1485331 - 1485217
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactctt-acatgtttgattgctcttgagtataattgattttacctcaagaa 255  Q
    ||||||||||| |||||||  |||  | |||||||||||||||||||||| |||| ||||||||| ||||||||||||| |||| ||||| |||  ||||    
T  1485331 tggtttcacttctagaggggtcaatatggattctagaggtgtagaattgattcttgacatgtttgtttgctcttgagtagaattaattttgcctttagaa 1485232  T
Q  256 ttgattctacttgaa 270  Q
    |||||||||||||||    
T  1485231 ttgattctacttgaa 1485217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 5724814 - 5724688
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| ||||| ||||||| ||||| || |||||||| |||||||||||| ||| |||||||||  |||| |   ||| |||||||||| |||| | |||    
T  5724814 tggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgattttgcctccaaaat 5724715  T
Q  257 tgattctacttgaagttaggatttgta 283  Q
    ||||||||||||||| |||||||||||    
T  5724714 tgattctacttgaagctaggatttgta 5724688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 25195548 - 25195434
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| ||||| |||||| |||||| |||||||| || ||||| |||||| ||| ||||||||| ||||| | |||||||||||||| | ||||  ||||    
T  25195548 tggttccacttctagaggaaccaaaattgattctggatgtgtataattgattctgacatgtttggttgctatcgagtataattgattctgcctccggaat 25195449  T
Q  257 tgattctacttgaag 271  Q
    |||||||||||||||    
T  25195448 tgattctacttgaag 25195434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 264
Target Start/End: Complemental strand, 33141890 - 33141784
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||||||||||||||| | ||||| ||||||||||  ||||| |||||| | | | ||||||| |||||||  |||||||||||||||||||| |||||    
T  33141890 tggtttcacttttagagag-ccaaaattgattctagcagtgtaaaattgattttgatatgtttggttgctctcaagtataattgattttacctccagaat 33141792  T
Q  257 tgattcta 264  Q
    ||||||||    
T  33141791 tgattcta 33141784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 26280533 - 26280633
Alignment:
Q  184 tgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgta 283  Q
    ||||| || |||||||||||||| | | ||||||||||||| | ||  ||| |||||||||| |||||||||||||||| |||||||| ||| |||||||    
T  26280533 tgattttaaaggtgtagaattgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattccacttgaagctagaatttgta 26280632  T
Q  284 g 284  Q
    |    
T  26280633 g 26280633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 33136647 - 33136574
Alignment:
Q  177 ccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctc 250  Q
    ||||| || |||||||||||||| |||||| | | ||||||||| ||||||| |||||||||||||||||||||    
T  33136647 ccaaaattaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgattttacctc 33136574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 6654218 - 6654147
Alignment:
Q  213 catgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    |||||||| ||||| ||||||| |||||||||| |||  |||||| ||||||||||||| ||||||||||||    
T  6654218 catgtttggttgctattgagtagaattgatttttccttcagaattaattctacttgaagctaggatttgtag 6654147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 765532 - 765443
Alignment:
Q  195 gtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    |||||||||||| ||| || |||||| ||||| || |||| || || ||||  |||||||||||||||||||||||| || |||||||||    
T  765532 gtgtagaattgattctgacgtgtttggttgcttttaagtagaactggttttggctcaagaattgattctacttgaagctatgatttgtag 765443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 284
Target Start/End: Original strand, 4910809 - 4910936
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| ||||||||||| ||| | | ||||||||  | |||||||||||| ||| ||||||||| |||   |  | || |||||||| | |||||| |||    
T  4910809 tggttccacttttagagagactataattgattctgaatgtgtagaattgattctgacatgtttggttgtcgtcaattagaattgattctgcctcaaaaat 4910908  T
Q  257 tgattctacttgaagttaggatttgtag 284  Q
    ||||||||||||||| || |||||||||    
T  4910909 tgattctacttgaagctatgatttgtag 4910936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 34910904 - 34910970
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgatt 223  Q
    ||||||||||| ||||||| ||||| | ||||||||||||||||||||||  || |||||| |||||    
T  34910904 tggtttcacttctagaggggccaaaatcgattctagaggtgtagaattgatcctaacatgtatgatt 34910970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 2234341 - 2234272
Alignment:
Q  214 atgtttgattgctcttgagtataattgattttacctcaagaattgattct-acttgaagttaggatttgt 282  Q
    ||||||| ||||||||||||| |||||||||| ||||  ||||||||||| || |||||||| |||||||    
T  2234341 atgtttggttgctcttgagtagaattgattttgcctcctgaattgattctaacatgaagttaagatttgt 2234272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 10400859 - 10400756
Alignment:
Q  178 caaatttgattctagaggtgtagaattgactcttacatgtttgatt-gctcttgagtataattgattttacctcaagaattgattctacttgaagttagg 276  Q
    |||| ||||||||||||||||| |||||| | | | ||||||| || ||| | ||||| ||||| |||| || | |||||| |||||| |||||||||||    
T  10400859 caaaattgattctagaggtgtataattgattttgatatgtttggtttgctttcgagtagaattgtttttgccactagaattaattctagttgaagttagg 10400760  T
Q  277 attt 280  Q
    ||||    
T  10400759 attt 10400756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 993933 - 993982
Alignment:
Q  231 agtataattgattttacctcaagaattgattctacttgaagttaggattt 280  Q
    |||| |||||||| ||||||||||||| ||| |||||||||||| |||||    
T  993933 agtagaattgattatacctcaagaattaattttacttgaagttatgattt 993982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 284
Target Start/End: Original strand, 14993077 - 14993106
Alignment:
Q  255 attgattctacttgaagttaggatttgtag 284  Q
    ||||||||||||||||||||||||||||||    
T  14993077 attgattctacttgaagttaggatttgtag 14993106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 7952858 - 7952766
Alignment:
Q  192 gaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    |||||||| |||||| | | ||||||||||||| | ||||||  | || ||||| |||| | |||| |||||||||||||  |||||||||||    
T  7952858 gaggtgtaaaattgattatgacatgtttgattggttttgagttgatttaattttgcctccaaaatttattctacttgaagcgaggatttgtag 7952766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 34620793 - 34620901
Alignment:
Q  163 cacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattc 262  Q
    ||||||| ||||  ||||| ||||||||| |||||||||||||| | | ||||||||| || || |  | || |||| ||||| ||||  ||||||||||    
T  34620793 cacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgattc 34620892  T
Q  263 tacttgaag 271  Q
    ||| |||||    
T  34620893 tacatgaag 34620901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 34748230 - 34748338
Alignment:
Q  163 cacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattc 262  Q
    ||||||| ||||  ||||| ||||||||| |||||||||||||| | | ||||||||| || || |  | || |||| ||||| ||||  ||||||||||    
T  34748230 cacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgattc 34748329  T
Q  263 tacttgaag 271  Q
    ||| |||||    
T  34748330 tacatgaag 34748338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 32927833 - 32927920
Alignment:
Q  197 gtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    |||||||||||||| ||||||||| ||||| |  |||| |||||||||| |||||| | |||||||||||||||| ||||||||||||    
T  32927833 gtagaattgactctgacatgtttggttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtag 32927920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 44141241 - 44141107
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactctta-------catgtttgattgctcttgagtataattgattttacct 249  Q
    ||||| ||||| |||||| |||||| |||||||| ||||| ||||||||| ||| |       ||||| |||||| | |  |||| |||||||||| |||    
T  44141241 tggttccacttctagaggaaccaaaattgattctggaggtctagaattgattctgagttctaacatgtctgattgttgtccagtagaattgattttgcct 44141142  T
Q  250 caagaattgattctacttgaagttaggatttgtag 284  Q
    | | |||||||||||||||||||||||||||||||    
T  44141141 ccaaaattgattctacttgaagttaggatttgtag 44141107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 37684341 - 37684431
Alignment:
Q  192 gaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgt 282  Q
    |||||||| |||||| ||  | ||||||| ||| | | ||||| ||||||||||  ||| |||||||||||||||||||||||||||||||    
T  37684341 gaggtgtaaaattgattccgaaatgtttggttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgt 37684431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 10553641 - 10553598
Alignment:
Q  226 tcttgagtataattgattttacctcaagaattgattctacttga 269  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||    
T  10553641 tcttgagtataatagattttacctcaaaaattgattctacttga 10553598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 32056266 - 32056372
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    |||||||||||||  ||| |||||| ||||||||||| ||||||||  || | | ||| ||||| |||||||  |||| ||||||||||||||| | |||    
T  32056266 tggtttcacttttgaaggaaccaaaattgattctagatgtgtagaacaga-tttgacaagtttggttgctctatagtaaaattgattttacctccataat 32056364  T
Q  257 tgattcta 264  Q
    ||||||||    
T  32056365 tgattcta 32056372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 7602252 - 7602166
Alignment:
Q  195 gtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttg 281  Q
    |||||||||||| ||| | || |||| ||| | | ||||| |||||||||||| || |||||| ||||| |||||||||||||||||    
T  7602252 gtgtagaattgaatctaatatttttggttgttttcgagtaaaattgattttacgtcgagaattaattctccttgaagttaggatttg 7602166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 4554261 - 4554342
Alignment:
Q  183 ttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattcta 264  Q
    ||||||||||||||||| |||||| | | |||  |||  |||||||  |||||||||||||||  |||||||||||||||||    
T  4554261 ttgattctagaggtgtaaaattgattttgacacatttagttgctctctagtataattgattttgtctcaagaattgattcta 4554342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 35495181 - 35495275
Alignment:
Q  177 ccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaag 271  Q
    ||||| ||||||||| | |||||||||||| | | ||||||||  || ||||  | || |||| ||||| |||| ||||||||||||||||||||    
T  35495181 ccaaaattgattctacaagtgtagaattgattttgacatgttttgtttctctaaattagaattaattttgcctctagaattgattctacttgaag 35495275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 26668482 - 26668563
Alignment:
Q  186 attctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctactt 267  Q
    ||||| ||| ||||||||||| ||| ||||||||||||  | | ||||| |||||||| | |||| | ||||||||||||||    
T  26668482 attctggagatgtagaattgattctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctactt 26668563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 35525351 - 35525427
Alignment:
Q  195 gtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaag 271  Q
    ||||||| || | ||| ||||||||||||| | | ||||| |||||||| |||| | |||||||||| |||||||||    
T  35525351 gtgtagatttaattctgacatgtttgattgttgtcgagtagaattgattctaccaccagaattgattgtacttgaag 35525427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 39648329 - 39648209
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| ||||||||||||   |||| |||||||||||| |||| |||||| | | ||||||||| || ||||  |||| ||||||||| ||| | | |||    
T  39648329 tggttacacttttagaggagtcaaaattgattctagagatgtataattgattttgacatgtttggtttctctatagtaaaattgatttcacccccaaaat 39648230  T
Q  257 tgattctacttgaagttagga 277  Q
     ||| |||||| ||| |||||    
T  39648229 ggatcctacttcaagctagga 39648209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 42455853 - 42455925
Alignment:
Q  197 gtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttga 269  Q
    |||||||||| | | ||||||||| ||||| |||||||  ||||||| | |||| | ||||||||||||||||    
T  42455853 gtagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 42455925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 273
Target Start/End: Original strand, 24587836 - 24587926
Alignment:
Q  183 ttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagtt 273  Q
    |||||||||||||||||||||||| | | ||||||||| ||||||||||||| |||||| |||  | | |||| |||||||||||||||||    
T  24587836 ttgattctagaggtgtagaattgattgtgacatgtttggttgctcttgagtagaattgactttgacgccagaactgattctacttgaagtt 24587926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 4458503 - 4458570
Alignment:
Q  183 ttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctc 250  Q
    ||||||||||||||||| |||||||| | ||||||||| |||| ||  ||||||||||||||||||||    
T  4458503 ttgattctagaggtgtataattgactttgacatgtttgtttgcactccagtataattgattttacctc 4458570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 9939885 - 9939803
Alignment:
Q  184 tgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctact 266  Q
    |||||||||||||||| |||| | | | ||||||||| || |||| |||||||||||||||| || | |||||||||||||||    
T  9939885 tgattctagaggtgtaaaattaattttgacatgtttggttcctctagagtataattgattttgcccctagaattgattctact 9939803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 50571264 - 50571312
Alignment:
Q  236 aattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    ||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  50571264 aattgattttatcttcagaattgattctacttgaagttaggatttgtag 50571312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 37523039 - 37522980
Alignment:
Q  212 acatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaag 271  Q
    ||||||||||||||||| ||||| ||||||||||  |||  |||||||||||||||||||    
T  37523039 acatgtttgattgctctggagtagaattgattttttctctcgaattgattctacttgaag 37522980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 6021728 - 6021832
Alignment:
Q  183 ttgattctagaggtgtagaat---tgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatt 279  Q
    |||||||||||||||||||||   ||| | | ||| ||||||||| | |  |||| |||||||||| |||| ||||| |||||||||||||| ||||||     
T  6021728 ttgattctagaggtgtagaataattgattttgacaagtttgattgatttcaagtagaattgattttgcctctagaatcgattctacttgaagctaggata 6021827  T
Q  280 tgtag 284  Q
    |||||    
T  6021828 tgtag 6021832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 263
Target Start/End: Complemental strand, 31362364 - 31362279
Alignment:
Q  178 caaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattct 263  Q
    |||| ||||||||||| ||||||||| |||||| ||||||||| ||||| |   ||| |||||||||| |||| | ||||||||||    
T  31362364 caaacttgattctagatgtgtagaatcgactctaacatgtttggttgctttcatgtagaattgattttgcctccataattgattct 31362279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 1003778 - 1003841
Alignment:
Q  212 acatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttag 275  Q
    ||||||||| || |||| |||||||||||||| |  || |||||||||||||| ||||||||||    
T  1003778 acatgtttggttcctctagagtataattgattgtgtcttaagaattgattctaattgaagttag 1003841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 15477913 - 15477826
Alignment:
Q  177 ccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattcta 264  Q
    ||||| |||||||| |||||||| |||||| |   | |||||||||| |||| |||||||||| ||||| |||| | |||||||||||    
T  15477913 ccaaaattgattctggaggtgtacaattgatttagatatgtttgattactctcgagtataattaatttttcctccataattgattcta 15477826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 7790752 - 7790699
Alignment:
Q  231 agtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    |||||||||||| ||  ||  ||||||||||||||||||||||| |||||||||    
T  7790752 agtataattgatattgtctttagaattgattctacttgaagttatgatttgtag 7790699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 47892570 - 47892462
Alignment:
Q  158 ggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaatt 257  Q
    |||||||| | ||||||| ||||| |||||| | || |||||||||||| ||   |||||||| ||||| ||||||| |||||||||| |  | |||| |    
T  47892570 ggtttcacatctagaggg-ccaaaattgattatggaagtgtagaattgattccgtcatgtttggttgcttttgagtagaattgatttttcacctagaact 47892472  T
Q  258 gattctactt 267  Q
    ||||||||||    
T  47892471 gattctactt 47892462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 34721966 - 34721899
Alignment:
Q  212 acatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgt 282  Q
    ||||||||||||| | || | ||||||||||||| |||  ||||||||||   ||||||||||||||||||    
T  34721966 acatgtttgattgttgttaaatataattgattttgcctttagaattgatt---cttgaagttaggatttgt 34721899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 10898626 - 10898739
Alignment:
Q  160 tttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattga 259  Q
    |||||||||| |||| | |||| |||||||||||| ||| ||||| | | | ||||||||| ||||||| ||||| |||||||||| |||| ||||||||    
T  10898626 tttcacttttggaggaatcaaaattgattctagagctgtcgaattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattga 10898725  T
Q  260 ttct-acttgaagt 272  Q
    |||| |||||||||    
T  10898726 ttctaacttgaagt 10898739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 264
Target Start/End: Complemental strand, 7668066 - 7667958
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattg-attttacctcaagaa 255  Q
    ||||||||||||| || | |  |||||||| ||||||||||||||||| | ||  |||| |||| ||||||||||||| ||||| ||||| |||| ||||    
T  7668066 tggtttcacttttcgatgaaataaatttgagtctagaggtgtagaattaattcagacatctttggttgctcttgagtagaattgaattttgcctccagaa 7667967  T
Q  256 ttgattcta 264  Q
    |||||||||    
T  7667966 ttgattcta 7667958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 34250509 - 34250423
Alignment:
Q  183 ttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttga 269  Q
    ||||||||||| |||||||||||  | | ||||||||| || |||| ||||| |||||||| | |||| ||||||||||||||||||    
T  34250509 ttgattctagatgtgtagaattgtttttgacatgtttggtttctctagagtagaattgattatgcctctagaattgattctacttga 34250423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 14299262 - 14299358
Alignment:
Q  188 tctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    ||||||||||||||||||| |||  ||| |||| ||| | | || || |||||||||| | |  | |||||||||||||||||||||||||||||||    
T  14299262 tctagaggtgtagaattgattctggcatatttggttgttttcgaataaaattgattttgcttttaaaattgattctacttgaagttaggatttgtag 14299358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 27374401 - 27374349
Alignment:
Q  231 agtataattgattttacctcaagaattgattctacttgaagttaggatttgta 283  Q
    |||| |||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  27374401 agtagaattaattttgccttaagaattgattctacttgaagttaggatttgta 27374349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 18851254 - 18851139
Alignment:
Q  169 tagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttg 268  Q
    ||||||||||||| |||||| | ||| ||||||||||||||| || |||||| ||||| |  | || |||||||  || | | | |||||||||||||||    
T  18851254 tagagggaccaaaattgattatggagttgtagaattgactctgacgtgtttggttgctatcaattagaattgatcctatccctataattgattctacttg 18851155  T
Q  269 aagttaggatttgtag 284  Q
    ||| || |||||||||    
T  18851154 aagctatgatttgtag 18851139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 39097165 - 39097228
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttg 220  Q
    ||||||||||||||||| |||| || |||||| ||||||||||||||||| | | |||||||||    
T  39097165 tggtttcacttttagagagaccgaaattgattatagaggtgtagaattgattttgacatgtttg 39097228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 10161753 - 10161834
Alignment:
Q  183 ttgattctagaggtgtagaattgactctt-acatgtttgattgctcttgagtataattgattttacctcaagaattgattcta 264  Q
    ||||||||||| |||||||||||| |||| ||||||||||||| ||| || || |||||| ||| |||| |||||||||||||    
T  10161753 ttgattctagatgtgtagaattga-tcttgacatgtttgattgttctcgaatagaattgactttgcctctagaattgattcta 10161834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 269
Target Start/End: Original strand, 5468675 - 5468786
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    ||||| |||||||| ||||  || | ||||||||||||||||||| |||| | | ||||||||||||| | | || ||||||||||| | |||| | | |    
T  5468675 tggttccacttttaaaggggtcataattgattctagaggtgtaga-ttgattatgacatgtttgattgttgtcgattataattgattctgcctccatatt 5468773  T
Q  257 tgattctacttga 269  Q
    |||||||||||||    
T  5468774 tgattctacttga 5468786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 283
Target Start/End: Original strand, 11647989 - 11648109
Alignment:
Q  163 cacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattc 262  Q
    ||||| ||||||||||| | |||||| | | |||||| |||||| | | ||||||||||||||| | ||||| |||| ||| | | |  | |||||||||    
T  11647989 cacttctagagggaccataattgattttggtggtgtataattgattttgacatgtttgattgctgtcgagtagaatttattatgcatttaaaattgattc 11648088  T
Q  263 tacttgaagttaggatttgta 283  Q
    ||||||||| || ||||||||    
T  11648089 tacttgaagctaagatttgta 11648109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 29922816 - 29922899
Alignment:
Q  178 caaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgatt 261  Q
    |||| ||||||||||  |||||||||||| | | ||||||||| ||| ||| ||| | ||||||||||  ||||||||||||||    
T  29922816 caaaattgattctagtagtgtagaattgattttgacatgtttggttgttctcgagcagaattgattttgtctcaagaattgatt 29922899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Complemental strand, 6951392 - 6951362
Alignment:
Q  254 aattgattctacttgaagttaggatttgtag 284  Q
    |||||||||||||||||||||||||||||||    
T  6951392 aattgattctacttgaagttaggatttgtag 6951362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 31906200 - 31906286
Alignment:
Q  197 gtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgta 283  Q
    |||||||||| | | ||||||||||||  | ||| || |||||| ||||||||| | |||||||| ||||||||| || ||||||||    
T  31906200 gtagaattgattatgacatgtttgattatttttgggtttaattgtttttacctctataattgattttacttgaagctatgatttgta 31906286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 36639839 - 36639952
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    |||||||||||| |||||  ||||| |||| |||| |||||||||| | | | ||||||||||| ||   || ||||| |||||||||| |||| | |||    
T  36639839 tggtttcacttt-agaggagccaaaattgactctaaaggtgtagaactaaattttacatgtttggttcacctagagtagaattgattttgcctccaaaat 36639937  T
Q  257 tgattctacttgaag 271  Q
     ||||||||||||||    
T  36639938 agattctacttgaag 36639952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 29922582 - 29922631
Alignment:
Q  212 acatgtttgattgctcttgagtataattgattttacctcaagaattgatt 261  Q
    ||||||||||||| |||  |||| |||||||||| |||||||||||||||    
T  29922582 acatgtttgattgttctctagtagaattgattttgcctcaagaattgatt 29922631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 38845695 - 38845646
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattga 206  Q
    ||||| ||||| ||||| ||||||| |||||||| |||||||||||||||    
T  38845695 tggttccacttctagagagaccaaaattgattctggaggtgtagaattga 38845646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 33047736 - 33047650
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgatt 243  Q
    ||||||| ||| ||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||||||   ||||| ||||||||    
T  33047736 tggtttcgcttctagagggaccaaaattgattttggaggtgtagaattgattctcacatgtttgattgctgacgagtagaattgatt 33047650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 37420355 - 37420272
Alignment:
Q  183 ttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctact 266  Q
    |||||||||||||||||||||||| | | |||||||||  | | || ||||| |||||||||| |||| |||||||||||||||    
T  37420355 ttgattctagaggtgtagaattgattttgacatgtttggcttccctagagtagaattgattttgcctctagaattgattctact 37420272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 26032162 - 26032093
Alignment:
Q  214 atgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgta 283  Q
    |||||| ||||||||  ||||||||||||| |||||  |||||||||| ||||||||||||| |||||||    
T  26032162 atgttttattgctctcaagtataattgattctacctttagaattgattatacttgaagttagaatttgta 26032093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 10644541 - 10644631
Alignment:
Q  193 aggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    |||||||||||||||||| |||||||||  || | | ||||| |||||||| | |||| | |||| |||||||||||||||| |||||||||    
T  10644541 aggtgtagaattgactctgacatgtttgtctgtt-tcgagtagaattgattctgcctccaaaatttattctacttgaagttaagatttgtag 10644631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 284
Target Start/End: Complemental strand, 2002853 - 2002752
Alignment:
Q  183 ttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgt 282  Q
    ||||||||||||| ||||||||||   | ||||  ||| ||||| |  |||| |||||||||| |||| |||  ||||||||||||||| ||||||||||    
T  2002853 ttgattctagaggagtagaattgatgttgacatacttggttgctttctagtagaattgattttgcctccagacctgattctacttgaagctaggatttgt 2002754  T
Q  283 ag 284  Q
    ||    
T  2002753 ag 2002752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 3476587 - 3476507
Alignment:
Q  186 attctagaggtgtagaattgactct--tacatgtttgattgctcttgagtataattgattttacctcaagaattgattcta 264  Q
    ||||||||||||||||||||| | |  || ||||||  ||||||| ||||| |||||||||| |||| |||||||||||||    
T  3476587 attctagaggtgtagaattgattttgatatatgtttcgttgctctcgagtaaaattgattttgcctccagaattgattcta 3476507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 11504190 - 11504118
Alignment:
Q  212 acatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    ||||||||||| | | |||||||||| ||||| |||||| | ||||||||||||   ||||||||||||||||    
T  11504190 acatgtttgatagttgttgagtataactgattctacctccaaaattgattctaccgaaagttaggatttgtag 11504118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 33503007 - 33502909
Alignment:
Q  183 ttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattct-acttgaagttaggattt 280  Q
    ||||||||  ||||||| |||||| | | ||||||||| ||||||| ||||| || ||||||| | || |||||||||||| |||||||| ||| ||||    
T  33503007 ttgattctgaaggtgtaaaattgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaattt 33502909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 270
Target Start/End: Complemental strand, 6327248 - 6327140
Alignment:
Q  157 tggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaat 256  Q
    |||||||||||||||||  | |||| |||||||||||||| ||||||     || ||||||||| ||| | |||| || |||||||| |   || |||||    
T  6327248 tggtttcacttttagagaaaacaaaattgattctagaggtttagaat-----ctgacatgtttggttgttgttgattaaaattgattatgtttctagaat 6327154  T
Q  257 tgattctacttgaa 270  Q
    ||||||||||||||    
T  6327153 tgattctacttgaa 6327140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 36987257 - 36987172
Alignment:
Q  196 tgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattct-acttgaagttaggattt 280  Q
    ||||||||||| | | |||||||||  | || |||||||||||||||||| | || |||| ||||||| |||||||||||| ||||    
T  36987257 tgtagaattgattttgacatgtttggattcttttgagtataattgattttgcttccagaaatgattctaacttgaagttagaattt 36987172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 40582648 - 40582713
Alignment:
Q  155 tatggtttcacttttagagggaccaaatttgattctagaggtgtagaattgactcttacatgtttg 220  Q
    ||||||| ||||||| || |  ||||| |||||||||||||||||||||||| | | |||||||||    
T  40582648 tatggttccacttttggaagagccaaaattgattctagaggtgtagaattgattttaacatgtttg 40582713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 15928592 - 15928532
Alignment:
Q  183 ttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgatt 243  Q
    |||||||| ||||||||||||||| | | ||||||||| ||| | ||||||| ||||||||    
T  15928592 ttgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgatt 15928532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 16488272 - 16488340
Alignment:
Q  182 tttgattctagaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctc 250  Q
    ||||||||||||||||||  ||||| ||| ||||| ||| ||||||| | ||| |||||||||| ||||    
T  16488272 tttgattctagaggtgtatgattgattctgacatggttggttgctctcgtgtagaattgattttgcctc 16488340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 16518715 - 16518807
Alignment:
Q  192 gaggtgtagaattgactcttacatgtttgattgctcttgagtataattgattttacctcaagaattgattctacttgaagttaggatttgtag 284  Q
    ||||||||||||||| ||| | ||||||| ||||| || |    ||||| |||| | || ||||||||||||||| |||| ||||||||||||    
T  16518715 gaggtgtagaattgattctgatatgtttggttgcttttcaaatgaattggttttgcttccagaattgattctactagaagataggatttgtag 16518807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 16519348 - 16519396
Alignment:
Q  158 ggtttcacttttagagggaccaaatttgattctagaggtgtagaattga 206  Q
    |||| ||||||| |||| | |||| ||||||||||||||||||||||||    
T  16519348 ggttccacttttggaggaagcaaaattgattctagaggtgtagaattga 16519396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 3423 - 3503
Alignment:
Q  20 aatgtgtatgttttccttcaaccaatatagactttcgcagttttttagtgtaatagtgttttatgctcatgagtcatgact 100  Q
    |||||||| |||||| ||||||||||||||| |||| |    |||||||| ||||| ||||||||||||| ||||| ||||    
T  3423 aatgtgtaagttttctttcaaccaatatagattttcaccaaattttagtgcaatagcgttttatgctcataagtcacgact 3503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University