View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_high_47 (Length: 268)

Name: NF11668_high_47
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_high_47
NF11668_high_47
[»] chr6 (12 HSPs)
chr6 (17-261)||(1841749-1841993)
chr6 (40-254)||(6465429-6465644)
chr6 (118-261)||(1822140-1822280)
chr6 (40-261)||(6526468-6526690)
chr6 (118-253)||(1838885-1839020)
chr6 (40-133)||(6523489-6523583)
chr6 (103-261)||(13035602-13035760)
chr6 (134-214)||(1832542-1832622)
chr6 (174-261)||(6515961-6516048)
chr6 (43-244)||(6461698-6461900)
chr6 (199-261)||(6472903-6472965)
chr6 (182-261)||(6505722-6505801)
[»] chr1 (2 HSPs)
chr1 (40-254)||(35231309-35231515)
chr1 (64-133)||(35243061-35243130)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 1841993 - 1841749
Alignment:
Q  17 atattggtcatttaagttctgctaagccaatgctcaatggttttttaaaatactttctaacttttggaatcacatcaaggaaacaaacctcttcagctat 116  Q
    |||||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841993 atattgatcatttaagttccgctaagccaatgctcgatgtttttttaaaatactttctaacttttggaatcacatcaaggaaacaaacctcttcagctat 1841894  T
Q  117 caatgccaaccatgcaaccctagcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaaccttcaacatatttcaaaaga 216  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1841893 caatgccgaccatgcaaccctagcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaaccttcaacatatttcaaaaga 1841794  T
Q  217 gctgaaacaatttcatcatgaaattcttcttttacacctttgctt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1841793 gctgaaacaatttcatcatgaaattcttcttttacacctttgctt 1841749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 40 - 254
Target Start/End: Original strand, 6465429 - 6465644
Alignment:
Q  40 aagccaatgctcaatggtttt-ttaaaatactttctaacttttggaatcacatcaaggaaacaaacctcttcagctatcaatgccaaccatgcaacccta 138  Q
    ||||||| ||||||| ||||  || ||| |||| |||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||  ||| |||||    
T  6465429 aagccaaggctcaatagtttccttcaaaaacttcctaattttcggaatcacatcaaggaaacaaacctcttcagcaatcaaagccaacctagcagcccta 6465528  T
Q  139 gcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaaccttcaacatatttcaaaagagctgaaacaatttcatcatgaa 238  Q
    |||||  | || |||||||||||||| |||||  | | |||| |||| || |||||||||||||||| |||||||||| | |||||||| |||||||||     
T  6465529 gcaatcaacttgccataaaagtaagacgaattcgtcgctattgcagacgaattcaaaccttcaacatctttcaaaagaacggaaacaatctcatcatgag 6465628  T
Q  239 attcttcttttacacc 254  Q
    |||||||||| |||||    
T  6465629 attcttctttaacacc 6465644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 1822280 - 1822140
Alignment:
Q  118 aatgccaaccatgcaaccctagcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaaccttcaacatatttcaaaagag 217  Q
    |||||||||| |||| |||| |||||  |||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |||||||| ||    
T  1822280 aatgccaaccttgcagccctggcaatcaatttactataaaagtaagaagaatttgttgttattgcagatgagttcataccttcaacatctttcaaaatag 1822181  T
Q  218 ctgaaacaatttcatcatgaaattcttcttttacacctttgctt 261  Q
    |||||||||||   |||||| |||||| ||| ||||||||||||    
T  1822180 ctgaaacaatt---tcatgagattcttgtttaacacctttgctt 1822140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 261
Target Start/End: Original strand, 6526468 - 6526690
Alignment:
Q  40 aagccaatgctcaatggtttt-ttaaaatactttctaacttttggaatcacatcaaggaaacaaacctcttcagctatcaatgccaaccatgcaacccta 138  Q
    ||||||| ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  | |||| | ||     
T  6526468 aagccaaggctcaatggtttccttcaaatactttctaacttttggaatcacatcaaggaaacaaacctcttccgctatcaatgcaagtcttgcagctctt 6526567  T
Q  139 gcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaaccttcaacatatttcaaaagagctgaaacaatttcatcatgaa 238  Q
    |||||  |||| |||||||| ||||| || ||| || |||||   ||||| ||||  ||||||||||  ||  |||| |||||||||||||||||| | |    
T  6526568 gcaatcaattttccataaaaataagatgattttgtttttattgttgatgaattcagtccttcaacatccttacaaagtgctgaaacaatttcatcacgca 6526667  T
Q  239 attcttcttttacacctttgctt 261  Q
    || | ||| | ||||||||||||    
T  6526668 atccatctctcacacctttgctt 6526690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 253
Target Start/End: Complemental strand, 1839020 - 1838885
Alignment:
Q  118 aatgccaaccatgcaaccctagcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaaccttcaacatatttcaaaagag 217  Q
    |||||||||| |||| |||| |||||  |||||||||||||||| |||||||||  | ||||| || ||||||||||   |||||||| |||||| ||||    
T  1839020 aatgccaaccttgcagccctggcaatcaatttaccataaaagtatgaagaatttgatattattgcaaatgagttcaattattcaacatctttcaagagag 1838921  T
Q  218 ctgaaacaatttcatcatgaaattcttcttttacac 253  Q
    |||||||||||||||||| | ||||||| |||||||    
T  1838920 ctgaaacaatttcatcattagattcttcatttacac 1838885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 6523489 - 6523583
Alignment:
Q  40 aagccaatgctcaatggttt-tttaaaatactttctaacttttggaatcacatcaaggaaacaaacctcttcagctatcaatgccaaccatgcaa 133  Q
    ||||||| |||||||| | | ||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||  | ||||||| |||||    
T  6523489 aagccaaggctcaatgatctctttcaaatactttttaacttttgaaatcacatcaaggaaacaaacctcttcagctattgaagccaaccttgcaa 6523583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 103 - 261
Target Start/End: Complemental strand, 13035760 - 13035602
Alignment:
Q  103 acctcttcagctatcaatgccaaccatgcaaccctagcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaaccttcaa 202  Q
    |||||||||| ||||||||| |||| |||| | || || ||  |||| |||||||||||||| ||  |  |||||||    ||||| || | ||||||||    
T  13035760 acctcttcagttatcaatgctaaccttgcagctcttgctatcaattttccataaaagtaagatgatgtcgttgttatcggtgatgactttagaccttcaa 13035661  T
Q  203 catatttcaaaagagctgaaacaatttcatcatgaaattcttcttttacacctttgctt 261  Q
    ||| |||| ||||||||||||||||||  |||||  |||||||||||||||||||||||    
T  13035660 catctttcgaaagagctgaaacaattttgtcatgtgattcttcttttacacctttgctt 13035602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 1832622 - 1832542
Alignment:
Q  134 ccctagcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaaccttcaacatatttcaaaa 214  Q
    ||||||||||  |||||| ||||||||| |||||  |  |||||||| |||||||||||||||||||||||| ||||||||    
T  1832622 ccctagcaatttatttacgataaaagtatgaagatatagttgttattgcagatgagttcaaaccttcaacatctttcaaaa 1832542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 6516048 - 6515961
Alignment:
Q  174 tgttatttcagatgagttcaaaccttcaacatatttcaaaagagctgaaacaatttcatcatgaaattcttcttttacacctttgctt 261  Q
    ||||||| | ||||| || ||||||||||||| ||| ||||| |  |||||||||||||||||  |||||||||||| ||||||||||    
T  6516048 tgttattgctgatgaatttaaaccttcaacatcttttaaaagcgacgaaacaatttcatcatgtgattcttcttttatacctttgctt 6515961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 244
Target Start/End: Complemental strand, 6461900 - 6461698
Alignment:
Q  43 ccaatgctcaatggttt-tttaaaatactttctaacttttggaatcacatcaaggaaacaaacctcttcagctatcaatgccaaccatgcaaccctagca 141  Q
    |||| |||||||||||| ||| ||| ||||  |||| |||||||||||||| | | || |||||||||||||||||||||| ||||  ||  ||||  ||    
T  6461900 ccaaggctcaatggtttcttttaaaaacttcttaacctttggaatcacatctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttcca 6461801  T
Q  142 atagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaaccttcaacatatttcaaaagagctgaaacaatttcatcatgaaatt 241  Q
    ||  ||||||||||| ||||||||   ||| | |||||||  ||||| |  | ||| ||||||| ||| ||||| | |||||| ||||||||| || |||    
T  6461800 atcaatttaccataagagtaagaatcttttgtggttatttttgatgaatctagaccctcaacatcttttaaaagtgatgaaacgatttcatcacgagatt 6461701  T
Q  242 ctt 244  Q
    |||    
T  6461700 ctt 6461698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 6472965 - 6472903
Alignment:
Q  199 tcaacatatttcaaaagagctgaaacaatttcatcatgaaattcttcttttacacctttgctt 261  Q
    ||||||| |||  ||||||||||||||||||| |||||  |||||||||||||||||||||||    
T  6472965 tcaacatcttttgaaagagctgaaacaatttcgtcatgtgattcttcttttacacctttgctt 6472903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 6505722 - 6505801
Alignment:
Q  182 cagatgagttcaaaccttcaacatatttcaaaagagctgaaacaatttcatcatgaaattcttcttttacacctttgctt 261  Q
    |||||||||| ||||||||||||| |||  |||| | ||||||||||||||   |  |||| ||||||||||||||||||    
T  6505722 cagatgagtttaaaccttcaacatctttagaaagtgatgaaacaatttcattgcgtgattcgtcttttacacctttgctt 6505801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 254
Target Start/End: Complemental strand, 35231515 - 35231309
Alignment:
Q  40 aagccaatgctcaatggttt-tttaaaatactttctaacttttggaatcacatcaaggaaacaaacctcttcagctatcaatgccaaccatgcaacccta 138  Q
    ||||||| |||||||| | | ||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||         |||     
T  35231515 aagccaaggctcaatgatctctttcaaatacttcttaacttttggaatcacatcaaggaaacaaacctcttcagctatcaaagccaa---------cctt 35231425  T
Q  139 gcaatagatttaccataaaagtaagaagaatttcttgttatttcagatgagttcaaaccttcaacatatttcaaaagagctgaaacaatttcatcatgaa 238  Q
    |||||  |||| |||||||| ||||| ||| | ||||||||  ||||||| || |  || |||||||  |||||| || | ||||||||||||| ||| |    
T  35231424 gcaatcaattttccataaaaataagatgaagtccttgttatcgcagatgaatttagtccctcaacatcattcaaaggaaccgaaacaatttcataatgta 35231325  T
Q  239 attcttcttttacacc 254  Q
    |||||||||| |||||    
T  35231324 attcttctttaacacc 35231309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 35243130 - 35243061
Alignment:
Q  64 aaatactttctaacttttggaatcacatcaaggaaacaaacctcttcagctatcaatgccaaccatgcaa 133  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  35243130 aaatacttcttaacttttggaatcacatcaaagaaacaaacctcttcagctatcaaagccaactatgcaa 35243061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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