View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_high_52 (Length: 250)

Name: NF11668_high_52
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_high_52
NF11668_high_52
[»] chr1 (10 HSPs)
chr1 (1-235)||(48661013-48661247)
chr1 (3-232)||(48666608-48666840)
chr1 (72-232)||(48652566-48652726)
chr1 (3-232)||(48656038-48656270)
chr1 (72-232)||(48618729-48618889)
chr1 (52-232)||(11546677-11546857)
chr1 (72-232)||(48628371-48628531)
chr1 (15-232)||(48584791-48585011)
chr1 (3-57)||(48618633-48618687)
chr1 (3-57)||(48652768-48652822)
[»] chr3 (2 HSPs)
chr3 (78-232)||(19666091-19666245)
chr3 (3-57)||(19665989-19666043)
[»] chr8 (2 HSPs)
chr8 (72-232)||(27227601-27227761)
chr8 (78-232)||(27223410-27223564)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 48661247 - 48661013
Alignment:
Q  1 acgaaattgcacatgggttattgaattctcaagtctcgtttttgtgggtattaaaacaacatgttttccccgatggcttcttggaggaaacaagtgggag 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48661247 acgaaattgcatatgggttattgaattctcaagtctcgtttttgtgggtattaaaacaacatgttttccccgatggcttcttggaggaaacaagtgggag 48661148  T
Q  101 aggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacacattgtggttggaattcatcgatggaagca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48661147 aggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacccattgtggttggaattcatcgatggaagca 48661048  T
Q  201 attactttaggggttccaatgttgacatttcctgc 235  Q
    ||||||||||| |||||||||||||||||||||||    
T  48661047 attactttaggagttccaatgttgacatttcctgc 48661013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 48666840 - 48666608
Alignment:
Q  3 gaaattgcacatgggttattgaattctcaagtctcgtttttgtgggtattaaaacaacatgtt---ttccccgatggcttcttggaggaaacaagtggga 99  Q
    ||||| ||| ||||||||||| ||||||||||| | |||||||||| |   |||||||||| |   || ||  |||| ||||||||||||||||||||||    
T  48666840 gaaatagcatatgggttattggattctcaagtcacatttttgtgggcaaagaaacaacatgatgatttgccgtatggattcttggaggaaacaagtggga 48666741  T
Q  100 gaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacacattgtggttggaattcatcgatggaagc 199  Q
    |||||||||||||||| ||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  48666740 gaggaaaagtagtgaattggagtccacaagaacaagtattggctcatccatcagtggcatgtttcataacacattgtggttggaactcatcaatggaagc 48666641  T
Q  200 aattactttaggggttccaatgttgacatttcc 232  Q
    | |||||||||| ||||||||||||||||||||    
T  48666640 acttactttaggagttccaatgttgacatttcc 48666608  T

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Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 72 - 232
Target Start/End: Complemental strand, 48652726 - 48652566
Alignment:
Q  72 gatggcttcttggaggaaacaagtgggagaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacac 171  Q
    ||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  48652726 gatgggttcttagaggaaacaagtgagagaggaaaagttgtaaaatggagtccacaagaacaagtacttgctcatccttcagtggcatgcttcataacac 48652627  T
Q  172 attgtggttggaattcatcgatggaagcaattactttaggggttccaatgttgacatttcc 232  Q
    ||||||||||||||||||| ||||||||| || |||| || ||||||||||||||||||||    
T  48652626 attgtggttggaattcatcaatggaagcactttctttgggagttccaatgttgacatttcc 48652566  T

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Target: chr1; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 232
Target Start/End: Complemental strand, 48656270 - 48656038
Alignment:
Q  3 gaaattgcacatgggttattgaattctcaagtctcgtttttgtgggtattaaaacaacatgtt---ttccccgatggcttcttggaggaaacaagtggga 99  Q
    ||||||||| ||||||||||||||||||||||| | ||||| |||| |   ||| | |||| |   || ||  |||| || |||||||||||||||||||    
T  48656270 gaaattgcatatgggttattgaattctcaagtcacatttttatgggcaaagaaaaagcatgatgatttgcctcatggatttttggaggaaacaagtggga 48656171  T
Q  100 gaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacacattgtggttggaattcatcgatggaagc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| ||| |    
T  48656170 gaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcatccttcagtggcatgtttcataacccattgtggttggaattcaacgattgaatc 48656071  T
Q  200 aattactttaggggttccaatgttgacatttcc 232  Q
    | || ||| ||| |||||| |||| ||||||||    
T  48656070 acttgcttcaggagttccagtgttaacatttcc 48656038  T

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Target: chr1; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 72 - 232
Target Start/End: Original strand, 48618729 - 48618889
Alignment:
Q  72 gatggcttcttggaggaaacaagtgggagaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacac 171  Q
    ||||| ||||| |||| || ||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  48618729 gatgggttcttagagggaataagtgagagaggaaaagtggtgaactggagtccacaagaagaagtacttgctcatccttcagtggcatgcttcataacac 48618828  T
Q  172 attgtggttggaattcatcgatggaagcaattactttaggggttccaatgttgacatttcc 232  Q
    ||||||||||||||||||| ||||||||| || |||| || ||||||||||||||||||||    
T  48618829 attgtggttggaattcatcaatggaagcactttctttgggagttccaatgttgacatttcc 48618889  T

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Target: chr1; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 52 - 232
Target Start/End: Complemental strand, 11546857 - 11546677
Alignment:
Q  52 taaaacaacatgttttccccgatggcttcttggaggaaacaagtgggagaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttc 151  Q
    ||||| |||||||||| ||  |||| ||||| |||||||||| || |||||||||||| ||||||||||||||||||||| ||||| | |||||| ||||    
T  11546857 taaaagaacatgttttgccaaatgggttcttagaggaaacaaatgagagaggaaaagttgtgaaatggagtccacaagaagaagtattggctcatccttc 11546758  T
Q  152 agtggcatgtttcataacacattgtggttggaattcatcgatggaagcaattactttaggggttccaatgttgacatttcc 232  Q
    | ||| |||||||||||||||||||||||||||||| || || || ||| ||| |||||| ||||||||||||||||||||    
T  11546757 attggtatgtttcataacacattgtggttggaattcttcaatagaggcacttagtttaggtgttccaatgttgacatttcc 11546677  T

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Target: chr1; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 72 - 232
Target Start/End: Complemental strand, 48628531 - 48628371
Alignment:
Q  72 gatggcttcttggaggaaacaagtgggagaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacac 171  Q
    ||||| ||||||||||||||||||| | |||||||||| ||||| ||||||||||||||  ||||||||| |||| |||| |||||||||||| | ||||    
T  48628531 gatgggttcttggaggaaacaagtgagtgaggaaaagtggtgaagtggagtccacaagaggaagtacttgatcatccttcggtggcatgtttcgtgacac 48628432  T
Q  172 attgtggttggaattcatcgatggaagcaattactttaggggttccaatgttgacatttcc 232  Q
    ||||||| ||||||||| |||||||||||||| ||| ||| |||||| ||||| |||||||    
T  48628431 attgtggctggaattcaacgatggaagcaattgcttcaggagttccagtgttggcatttcc 48628371  T

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Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 48585011 - 48584791
Alignment:
Q  15 gggttattgaattctcaagtctcgtttttgtgggtattaaaacaacatg---ttttccccgatggcttcttggaggaaacaagtgggagaggaaaagtag 111  Q
    |||||||||||||||||||||||||||||||||  |||||   | | ||   |||| || ||||  || ||||||||||||| || |||||| ||||| |    
T  48585011 gggttattgaattctcaagtctcgtttttgtggtcattaagcaatcctggtgttttgcctgatgattttttggaggaaacaaatgagagagggaaagtgg 48584912  T
Q  112 tgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacacattgtggttggaattcatcgatggaagcaattactttagg 211  Q
    || | ||||||||||||| | | |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |||||  || |||||||    
T  48584911 tggagtggagtccacaagtagatgtacttgctcatccttcagttgcatgtttcataacacattgtggttggaattcatcaattgaagctctttctttagg 48584812  T
Q  212 ggttccaatgttgacatttcc 232  Q
     |||||  |||||||||||||    
T  48584811 agttcctgtgttgacatttcc 48584791  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 48618633 - 48618687
Alignment:
Q  3 gaaattgcacatgggttattgaattctcaagtctcgtttttgtgggtattaaaac 57  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  48618633 gaaattgcatatgggttattggattctcaagtatcgtttttgtgggtattaaaac 48618687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 48652822 - 48652768
Alignment:
Q  3 gaaattgcacatgggttattgaattctcaagtctcgtttttgtgggtattaaaac 57  Q
    ||||| ||| ||||||||||| |||||||||| ||||||||||||||||||||||    
T  48652822 gaaatagcatatgggttattggattctcaagtatcgtttttgtgggtattaaaac 48652768  T

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Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 232
Target Start/End: Original strand, 19666091 - 19666245
Alignment:
Q  78 ttcttggaggaaacaagtgggagaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacacattgtg 177  Q
    ||||| |||||||||| || |||||||||||| ||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  19666091 ttcttagaggaaacaaatgagagaggaaaagtggtgaattggagtccacaagaagaagtacttgctcatccttcagtagcatgtttcataacacattgtg 19666190  T
Q  178 gttggaattcatcgatggaagcaattactttaggggttccaatgttgacatttcc 232  Q
    |||||||||| |||||||||||  ||| |||||| ||||||||||||||||||||    
T  19666191 gttggaattcgtcgatggaagcgcttagtttaggagttccaatgttgacatttcc 19666245  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 19665989 - 19666043
Alignment:
Q  3 gaaattgcacatgggttattgaattctcaagtctcgtttttgtgggtattaaaac 57  Q
    ||||||||||||||||||||| ||||| | || || |||||||||||| ||||||    
T  19665989 gaaattgcacatgggttattggattctaatgtttcatttttgtgggtactaaaac 19666043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 232
Target Start/End: Complemental strand, 27227761 - 27227601
Alignment:
Q  72 gatggcttcttggaggaaacaagtgggagaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacac 171  Q
    ||||| |||||||||||||| ||||||| ||||||||| | ||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||| ||||    
T  27227761 gatgggttcttggaggaaactagtgggaaaggaaaagttgcgaagtggtgtccacaagaacaagtactagctcatccttcagtggcatgtttcatgacac 27227662  T
Q  172 attgtggttggaattcatcgatggaagcaattactttaggggttccaatgttgacatttcc 232  Q
    ||||||||||||| || |||||||| ||| |||||||||| || || ||||| ||||||||    
T  27227661 attgtggttggaactcgtcgatggaggcacttactttaggagtgccgatgttaacatttcc 27227601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 232
Target Start/End: Complemental strand, 27223564 - 27223410
Alignment:
Q  78 ttcttggaggaaacaagtgggagaggaaaagtagtgaaatggagtccacaagaacaagtacttgctcattcttcagtggcatgtttcataacacattgtg 177  Q
    ||||| |||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||| |||| |||||||| ||  ||||||||||||    
T  27223564 ttcttcgaggaaactagtgggagaggaaaagtggtgaagtggtgtccacaagaacaagtactagctcatccttcggtggcatgctttgtaacacattgtg 27223465  T
Q  178 gttggaattcatcgatggaagcaattactttaggggttccaatgttgacatttcc 232  Q
    ||||||| || |||||||||||| |||||||||| || || ||||| ||||||||    
T  27223464 gttggaactcgtcgatggaagcacttactttaggagtgccgatgttaacatttcc 27223410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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