View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_high_58 (Length: 240)
Name: NF11668_high_58
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_58 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 8846511 - 8846276
Alignment:
| Q |
5 |
gccaatgctatcaaatcaaattgaaggcctacgacgttcaaaacgtaggaatgtccaacccaaacgttacataggttcttctgttgagaagttggaagtt |
104 |
Q |
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| T |
8846511 |
gccaatgctatcaaatcaaattgaaggcctacgacgttcaaaacgtaggaatgtccaacccaaacgttacataggttcttctgttgagaagttggaagtt |
8846412 |
T |
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| Q |
105 |
ggtacttttcgaatgaggccatacaagataggagcttatttgatagaggatgaaaattcttcagatttagaagttgatgataatgttactttgggacatt |
204 |
Q |
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| T |
8846411 |
ggtacttttcgaatgaggccatacaagataggatgttatttgatagaggatgaaaattcttcagatttagaagttgatgataatgttactttgggacatt |
8846312 |
T |
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| Q |
205 |
attatagtttctgcaaagagaagcctacgaagaggc |
240 |
Q |
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| T |
8846311 |
attatagtttctgcaaagagaagcctacgaagaggc |
8846276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 8821259 - 8821422
Alignment:
| Q |
14 |
atcaaatcaaattgaaggcctacgacgttcaaaacgtaggaatgtccaacccaaacgttacataggttcttctgttgagaagttggaagttggtactttt |
113 |
Q |
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| T |
8821259 |
atcaaatcaaattgaaggcctgcgacgttaaaaacgtaggaatgtcaaacccaaacattacatggattttactgttgagaagttggaagttggtactctt |
8821358 |
T |
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| Q |
114 |
cgaatgaggccatacaagataggagcttatttgatagaggatgaaaattcttcagatttagaag |
177 |
Q |
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| T |
8821359 |
caaacgaggccatacaagagaggagcttatgtgatcaaggattaaaataattcaaatttagaag |
8821422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 8820528 - 8820376
Alignment:
| Q |
14 |
atcaaatcaaattgaaggcctacgacgttcaaaacgtaggaatgtccaacccaaacgttacataggttcttctgttgagaagttggaagttggtactttt |
113 |
Q |
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| T |
8820528 |
atcaaatcaaattgaaggcctgagacgttcaaaacataggaatgataaacccaaaagttacatggattgtgatgttgagaagttggaatttggtactttt |
8820429 |
T |
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| Q |
114 |
cgaatgaggccatacaagataggagcttatttgatagaggatgaaaattcttc |
166 |
Q |
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| T |
8820428 |
cgaacgaggccaaacaagtgaggagcttatgtgattgaggatgaaaattcttc |
8820376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 8820251 - 8820186
Alignment:
| Q |
172 |
tagaagttgatgataatgttactttgggacattattatagtttctgcaaagagaagcctacgaaga |
237 |
Q |
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| T |
8820251 |
tagaagttgatgataatgttattttggaacattcttatagtttatgcatatagaatcctacaaaga |
8820186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 8821513 - 8821583
Alignment:
| Q |
172 |
tagaagttgatgataatgttactttgggacattattatagtttctgc--aaagagaagcctacgaagaggc |
240 |
Q |
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| T |
8821513 |
tagaagttgatgataatgttacaatgagacattcttatagattttgccaagagagaagcctacgaagaggc |
8821583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 32252398 - 32252246
Alignment:
| Q |
14 |
atcaaatcaaattgaaggcctacgacgttcaaaacgtaggaatgtccaacccaaacgttacataggttcttctgttgagaagttggaagttggtactttt |
113 |
Q |
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| T |
32252398 |
atcaaatgaagttgaaggcttgcgacgttcgaaacgtaggaatgtacagcctgagcgttacgtaggttgtgttgttgagaagttggaagtgggtaatttt |
32252299 |
T |
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| Q |
114 |
cgaatgaggccatacaagataggagcttatttgatagaggatgaaaattcttc |
166 |
Q |
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| T |
32252298 |
cgaacgtgtccctacaagagaacaacttatatgatagaagatgaaaactcttc |
32252246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 32229390 - 32229358
Alignment:
| Q |
175 |
aagttgatgataatgttactttgggacattatt |
207 |
Q |
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| T |
32229390 |
aagttgatgataatgttactttgggacattatt |
32229358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 32251996 - 32251942
Alignment:
| Q |
173 |
agaagttgatgataatgttactttgggacattattatagtttctgcaaagagaag |
227 |
Q |
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| T |
32251996 |
agaagttgatggtaatgttactttgagagattataatagtttcttcaaggagaag |
32251942 |
T |
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