View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11668_high_6 (Length: 668)
Name: NF11668_high_6
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 341 - 654
Target Start/End: Complemental strand, 52477358 - 52477045
Alignment:
| Q |
341 |
tattctatccaactaaacgtcactcatataaaccaacacttgcacttagacactatgcagtgagcatgtgacgtgacctcgtcgccataatgtagaaact |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52477358 |
tattctatccaactaaacgtcactcatataaaccaacacttgcacttagacactatgcagtgagcatgtgacatgacctcgtcgccataatgtagaaact |
52477259 |
T |
|
| Q |
441 |
aaaataaattaacattaacttgtttcaataaatgaatatatataaacaaattcatgctttcttcaagggactctgggaaccatcatattagtctttgagc |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52477258 |
aaaataaattaacattaacttgtttcaataaatgaatatatataaacaaattcatgttttcttcaagggactctgggaaccatcatattagtctttgagc |
52477159 |
T |
|
| Q |
541 |
tatcacataaataaaattggacataacatcttcaccccaaaactttaagacatgcgggttcttgatgacaatttatagttatagtgaaaataacagtaac |
640 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52477158 |
tatcacataaatgaaattggacataacatcttcaccccaaaactttaagacatgcgggttcttgatgacaatttatagttatagtgaaaataacagtaac |
52477059 |
T |
|
| Q |
641 |
aaagaggaacttag |
654 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
52477058 |
aaagaggaacttag |
52477045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 52477686 - 52477420
Alignment:
| Q |
11 |
caaaggtgtctatgaatttgtccgacttcgccgcctccggtaaccaaatccgttatttcacttgatttatttttgactctgactctcatgctggttttgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
52477686 |
caaaggtgtctatgaatttgtccgacttcgccgcctccggtaaccaaatccgttatttcacttgatttatttttgact--gactctcatgctggttttgt |
52477589 |
T |
|
| Q |
111 |
ccttggaacttatgttccttatcacttctagtcacaattgcatcttcaaaacaaaacgcaagacacttctctgatcttgcaaactttgatttcagaaaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52477588 |
ccttggaacttatgttccttatcacttctagtcacaattgcatcttcaaaacaaaacgcaagacacttctctgatcttgcaaactttgatttcagaaaac |
52477489 |
T |
|
| Q |
211 |
actttcagtttttcactatattcaaaactaaacaatgaagttgtcttccatacaaatagttgacaacag |
279 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52477488 |
actttcagtttttcactatattaaaaactaaacaatgaagttgtcttccatacaaatagttgacaacag |
52477420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University