View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_high_60 (Length: 238)
Name: NF11668_high_60
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_60 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1613279 - 1613048
Alignment:
| Q |
1 |
tgaagaggatatgtggttctggcaattcaattcagccaaacgttacgttatgtgtaatgcatatgattacttgactgtaatggattctaatgttattcct |
100 |
Q |
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| T |
1613279 |
tgaagaggatatgtggttctggcaattcaattcggccaaacgttacgttgtgtgtaatgcatatgattacttgactgtaatggattctaatgttgttact |
1613180 |
T |
|
| Q |
101 |
gatgacaactacaata-----ttcaacgctgttcct-------tttctttgtttgtttggcgtttgctgtttaatcgtctctctacaaaggataaccttt |
188 |
Q |
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||||||||||| |||| ||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
1613179 |
gatgacaactataatatttggttcaaagttgttcctcttaaagtttctttgtttgtttggcgtttgctgtttaatagtctctctacaaaggagaaccttt |
1613080 |
T |
|
| Q |
189 |
tgaaaaaagaaattatttctttgaacaattgt |
220 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
1613079 |
tgaaaaaagaaattatttctttgaacgattgt |
1613048 |
T |
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