View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_high_7 (Length: 665)

Name: NF11668_high_7
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_high_7
NF11668_high_7
[»] chr7 (12 HSPs)
chr7 (516-655)||(28014282-28014421)
chr7 (511-655)||(25471780-25471924)
chr7 (552-655)||(20046504-20046607)
chr7 (531-655)||(44963261-44963385)
chr7 (97-239)||(28014430-28014562)
chr7 (584-655)||(28124596-28124667)
chr7 (584-655)||(28126423-28126494)
chr7 (554-647)||(8405628-8405721)
chr7 (584-655)||(4895735-4895806)
chr7 (22-76)||(28014587-28014641)
chr7 (22-77)||(28006028-28006084)
chr7 (537-618)||(29598018-29598100)
[»] chr6 (11 HSPs)
chr6 (551-655)||(5376996-5377100)
chr6 (551-655)||(5378851-5378955)
chr6 (531-655)||(19645309-19645433)
chr6 (531-655)||(1088662-1088786)
chr6 (551-655)||(8915586-8915690)
chr6 (551-655)||(20985817-20985921)
chr6 (571-632)||(24544757-24544818)
chr6 (570-642)||(9415205-9415277)
chr6 (551-586)||(15149116-15149151)
chr6 (551-630)||(30488554-30488632)
chr6 (613-655)||(31528957-31528999)
[»] chr3 (3 HSPs)
chr3 (551-655)||(17402791-17402895)
chr3 (531-655)||(1140099-1140223)
chr3 (551-655)||(6789738-6789842)
[»] chr8 (12 HSPs)
chr8 (531-655)||(5567524-5567648)
chr8 (531-655)||(30224328-30224452)
chr8 (531-655)||(25249104-25249228)
chr8 (551-630)||(31032038-31032116)
chr8 (531-630)||(3379149-3379247)
chr8 (593-655)||(36535860-36535922)
chr8 (571-655)||(6428879-6428963)
chr8 (555-630)||(19473654-19473728)
chr8 (555-630)||(19544579-19544653)
chr8 (555-630)||(19588043-19588117)
chr8 (590-655)||(3375443-3375508)
chr8 (551-630)||(14939633-14939711)
[»] chr4 (11 HSPs)
chr4 (531-655)||(18656206-18656330)
chr4 (531-655)||(7040459-7040583)
chr4 (531-655)||(23564684-23564808)
chr4 (551-630)||(56074680-56074759)
chr4 (584-655)||(52518911-52518982)
chr4 (584-655)||(52520753-52520824)
chr4 (551-630)||(52545137-52545215)
chr4 (590-650)||(23566383-23566443)
chr4 (531-622)||(54296526-54296617)
chr4 (515-618)||(18395689-18395792)
chr4 (551-618)||(42665051-42665118)
[»] chr2 (4 HSPs)
chr2 (531-655)||(29758218-29758342)
chr2 (511-630)||(18612074-18612194)
chr2 (531-613)||(8759115-8759197)
chr2 (582-622)||(17148670-17148710)
[»] scaffold0189 (1 HSPs)
scaffold0189 (551-655)||(19064-19167)
[»] chr1 (6 HSPs)
chr1 (531-655)||(17449409-17449532)
chr1 (584-655)||(16808587-16808658)
chr1 (551-622)||(5924828-5924898)
chr1 (559-639)||(48941728-48941810)
chr1 (551-630)||(9487459-9487535)
chr1 (191-228)||(42332227-42332264)
[»] scaffold0057 (1 HSPs)
scaffold0057 (531-630)||(58884-58982)
[»] scaffold0006 (1 HSPs)
scaffold0006 (551-614)||(39262-39325)
[»] chr5 (3 HSPs)
chr5 (556-628)||(20012959-20013030)
chr5 (533-606)||(25076173-25076246)
chr5 (533-606)||(25134142-25134215)
[»] scaffold0079 (1 HSPs)
scaffold0079 (491-558)||(15656-15722)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 5e-61; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 516 - 655
Target Start/End: Complemental strand, 28014421 - 28014282
Alignment:
Q  516 tataaatatcttactctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttat 615  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  28014421 tataaatagcttactctattgtactcattattcatcttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagcactcttat 28014322  T
Q  616 gcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  28014321 gcttgctatcttgcttacatctatgatctttctccctatg 28014282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 511 - 655
Target Start/End: Complemental strand, 25471924 - 25471780
Alignment:
Q  511 actcctataaatatcttactctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtact 610  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| ||| || |    
T  25471924 actcctataaatacctcactctattgtactcattattcatcttttatcaatctattcatttatataatgagtttctattagtatctcccacgtgaataat 25471825  T
Q  611 cttatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    ||||||||||||||||| |||||||||||||| ||||||| ||||    
T  25471824 cttatgcttgctatctttcttacatctatgatctttctccttatg 25471780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 552 - 655
Target Start/End: Complemental strand, 20046607 - 20046504
Alignment:
Q  552 ttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctccc 651  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  20046607 ttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatctcgcttacatctatgacttttctccc 20046508  T
Q  652 tatg 655  Q
    ||||    
T  20046507 tatg 20046504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 531 - 655
Target Start/End: Original strand, 44963261 - 44963385
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||||||| ||||| | |||||||||| ||||| ||||||||||||||||||||| ||    
T  44963261 ctattgtactcattcatcatcttttatcaatctattcatttctacaatgaatttctttgagtatctccctcatgaatactcttatgcttgctatcttact 44963360  T
Q  631 tacatctatgatttttctccctatg 655  Q
    ||||||||||| |||||||||||||    
T  44963361 tacatctatgacttttctccctatg 44963385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 28014562 - 28014430
Alignment:
Q  97 aacggtaaatattaatattgttgtttattttaaaaccaaatgtattcttcacgtacaactgcataaattaattccctcaaaacaactataagattcattt 196  Q
    ||||||||||||||||||| |||||||||||||||||||||        |||||||||||| |||||||||||||||||||||||||| ||  |||||||    
T  28014562 aacggtaaatattaatatttttgtttattttaaaaccaaat--------cacgtacaactgaataaattaattccctcaaaacaactaaaa--ttcattt 28014473  T
Q  197 aaggtcctgacctcttccaacaaatattttttcatatgtatca 239  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  28014472 aaggtcccaacctcttccaacaaatattttttcatatgtatca 28014430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 584 - 655
Target Start/End: Complemental strand, 28124667 - 28124596
Alignment:
Q  584 tctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  28124667 tctatgagtatctcccacatgagtactcttatgcttgctctcttgcttacatctatgatctttctccctatg 28124596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 584 - 655
Target Start/End: Complemental strand, 28126494 - 28126423
Alignment:
Q  584 tctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  28126494 tctatgagtatctcccacatgagtactcttatgcttgctctcttgcttacatctatgatctttctccctatg 28126423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 554 - 647
Target Start/End: Original strand, 8405628 - 8405721
Alignment:
Q  554 ttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttc 647  Q
    ||||||||||| ||||||||||||||||||||||  | |||||||| ||||| |||||||||||||||||| |||||||||| |||||| ||||    
T  8405628 ttatcaatctagtcatttctacaatgagtttctacgattatctcccccatgaatactcttatgcttgctattttgcttacatatatgatctttc 8405721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 584 - 655
Target Start/End: Original strand, 4895735 - 4895806
Alignment:
Q  584 tctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    ||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  4895735 tctatgagtatctcccagatgagtactcttatgtttgctctcttgcttacatctatgatctttctccctatg 4895806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 28014641 - 28014587
Alignment:
Q  22 gtatccattgtgaattctacatattagattgggaaaatcaaggtaatgacaatac 76  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28014641 gtatccattgtgaattctacatattagattgggaaaatcaaggcaatgacaatac 28014587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 28006084 - 28006028
Alignment:
Q  22 gtatccattgtgaatt-ctacatattagattgggaaaatcaaggtaatgacaatact 77  Q
    |||| ||||||||||| | |||||||||||| ||||||||||||||||| |||||||    
T  28006084 gtattcattgtgaatttccacatattagattaggaaaatcaaggtaatggcaatact 28006028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 618
Target Start/End: Complemental strand, 29598100 - 29598018
Alignment:
Q  537 tactcattattcaacttttatcaa-tcta-ttcatttctacaatgagtttctattagtatctcccacatgagtactcttatgct 618  Q
    ||||| ||||||| |||||||||| |||| |||||| |||| |||||| |||||  ||||||||||||||| ||||||||||||    
T  29598100 tactctttattcatcttttatcaaatctagttcatt-ctactatgagtctctatgggtatctcccacatgaatactcttatgct 29598018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 551 - 655
Target Start/End: Original strand, 5376996 - 5377100
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctcc 650  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5376996 cttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgacttttctcc 5377095  T
Q  651 ctatg 655  Q
    |||||    
T  5377096 ctatg 5377100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 551 - 655
Target Start/End: Original strand, 5378851 - 5378955
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctcc 650  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5378851 cttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgacttttctcc 5378950  T
Q  651 ctatg 655  Q
    |||||    
T  5378951 ctatg 5378955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 531 - 655
Target Start/End: Complemental strand, 19645433 - 19645309
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  | | |||||||||||||||| ||||||||||||| ||||| | |||||||||| ||||||||||||||| |||||||||||| |    
T  19645433 ctattgtactcattcattatcttttatcaatctatttatttctacaatgaatttctttgagtatctccctcatgagtactcttatacttgctatcttggt 19645334  T
Q  631 tacatctatgatttttctccctatg 655  Q
    ||||||||||| |||||||||||||    
T  19645333 tacatctatgacttttctccctatg 19645309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 531 - 655
Target Start/End: Complemental strand, 1088786 - 1088662
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctatt-agtatctcccacatgagtactcttatgcttgctatcttgc 629  Q
    ||||||||||||||  ||| |||||||||||||||||||| ||| ||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||    
T  1088786 ctattgtactcattcatcatcttttatcaatctattcatt-ctataatgagtttcttttgagtatctcccatatgagtactcttatgtttgctatcttgc 1088688  T
Q  630 ttacatctatgatttttctccctatg 655  Q
    |||||||||||| || ||| ||||||    
T  1088687 ttacatctatgacttctcttcctatg 1088662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 551 - 655
Target Start/End: Original strand, 8915586 - 8915690
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctcc 650  Q
    ||||||| |||||||||||||||| ||| ||||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||     
T  8915586 cttttattaatctattcatttctataataagtttctatgagtatcttccacacgagtactcttatgcttgctctcttgcttacatctatgatttttatct 8915685  T
Q  651 ctatg 655  Q
    |||||    
T  8915686 ctatg 8915690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 551 - 655
Target Start/End: Complemental strand, 20985921 - 20985817
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctcc 650  Q
    |||||||||||||||||||||||| ||||| ||| ||| ||||||| |||||||||||||||||||||||| | |||| ||||||||||||| ||  |||    
T  20985921 cttttatcaatctattcatttctataatgaatttttataagtatctaccacatgagtactcttatgcttgcaaacttgattacatctatgatcttgatcc 20985822  T
Q  651 ctatg 655  Q
    |||||    
T  20985821 ctatg 20985817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 571 - 632
Target Start/End: Original strand, 24544757 - 24544818
Alignment:
Q  571 tctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgctta 632  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  24544757 tctactatgagtttctatgagtatctccctcatgagtactcttatgcttgctttcttgctta 24544818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 570 - 642
Target Start/End: Original strand, 9415205 - 9415277
Alignment:
Q  570 ttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgat 642  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||| | | ||| |||||| ||||||    
T  9415205 ttctacaatgagtttctatgagtatctcccacatgagtactcttatgtttgttcttttgtttacatttatgat 9415277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 586
Target Start/End: Complemental strand, 15149151 - 15149116
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttct 586  Q
    ||||||||||||||||||||||||||||||||||||    
T  15149151 cttttatcaatctattcatttctacaatgagtttct 15149116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 630
Target Start/End: Original strand, 30488554 - 30488632
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    |||||||||||||||||||| ||| ||||||||| |||  |||||| ||||||||||| | |||||||| || |||||||    
T  30488554 cttttatcaatctattcatt-ctataatgagtttttatcggtatcttccacatgagtatttttatgcttactttcttgct 30488632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 613 - 655
Target Start/End: Original strand, 31528957 - 31528999
Alignment:
Q  613 tatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    |||||||||||||||||||||||||||||| ||  ||||||||    
T  31528957 tatgcttgctatcttgcttacatctatgatcttcatccctatg 31528999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 551 - 655
Target Start/End: Complemental strand, 17402895 - 17402791
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctcc 650  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17402895 cttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgacttttctcc 17402796  T
Q  651 ctatg 655  Q
    |||||    
T  17402795 ctatg 17402791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 531 - 655
Target Start/End: Original strand, 1140099 - 1140223
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||    
T  1140099 ctattgtactcattcatcatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgct 1140198  T
Q  631 tacatctatgatttttctccctatg 655  Q
    ||||||||||| |||||||||||||    
T  1140199 tacatctatgacttttctccctatg 1140223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 551 - 655
Target Start/End: Original strand, 6789738 - 6789842
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatc-ttgcttacatctatgatttttctc 649  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||    
T  6789738 cttttttcaatctattcatt-ctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatctttgcttacatctatgacttctctc 6789836  T
Q  650 cctatg 655  Q
    ||||||    
T  6789837 cctatg 6789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 531 - 655
Target Start/End: Original strand, 5567524 - 5567648
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||    
T  5567524 ctattgtactcattcatcatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgct 5567623  T
Q  631 tacatctatgatttttctccctatg 655  Q
    ||||||||||| |||||||||||||    
T  5567624 tacatctatgacttttctccctatg 5567648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 531 - 655
Target Start/End: Original strand, 30224328 - 30224452
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  | | ||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||    
T  30224328 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgct 30224427  T
Q  631 tacatctatgatttttctccctatg 655  Q
    ||||||||||| |||||||||||||    
T  30224428 tacatctatgacttttctccctatg 30224452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 531 - 655
Target Start/End: Original strand, 25249104 - 25249228
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  | | ||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||| ||||||||||||||||||||    
T  25249104 ctattgtactcattcatgatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtacccttatgcttgctatcttgct 25249203  T
Q  631 tacatctatgatttttctccctatg 655  Q
    ||||| ||||| |||||||||||||    
T  25249204 tacatatatgacttttctccctatg 25249228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 551 - 630
Target Start/End: Complemental strand, 31032116 - 31032038
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  31032116 cttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 31032038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 531 - 630
Target Start/End: Complemental strand, 3379247 - 3379149
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  |||  ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||    
T  3379247 ctattgtactcattcatcattttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtacttttatacttgctttcttgct 3379149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 593 - 655
Target Start/End: Complemental strand, 36535922 - 36535860
Alignment:
Q  593 atctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  36535922 atctcccacatgagtactcttatgcttgctatcttgcttacatctatgacctttctccctatg 36535860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 571 - 655
Target Start/End: Original strand, 6428879 - 6428963
Alignment:
Q  571 tctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    |||||||||||||||| | |||||||| |||||||||||||||||| |||||||||| ||||||||||||| || ||||| ||||    
T  6428879 tctacaatgagtttctttgagtatctctcacatgagtactcttatgtttgctatcttacttacatctatgacttctctccttatg 6428963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 630
Target Start/End: Original strand, 19473654 - 19473728
Alignment:
Q  555 tatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||| |||||||    
T  19473654 tatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19473728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 630
Target Start/End: Original strand, 19544579 - 19544653
Alignment:
Q  555 tatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||| |||||||    
T  19544579 tatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19544653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 555 - 630
Target Start/End: Complemental strand, 19588117 - 19588043
Alignment:
Q  555 tatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||| |||||||    
T  19588117 tatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgct 19588043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 590 - 655
Target Start/End: Complemental strand, 3375508 - 3375443
Alignment:
Q  590 agtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||  ||||||||||||    
T  3375508 agtatctcccacatgagtactcttttgcttgctatcttacttacatctatgacctttctccctatg 3375443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 630
Target Start/End: Original strand, 14939633 - 14939711
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    |||||||||||||||||||| ||| ||||||||||||  ||||||| | |||||||||||| |||||||||| |||||||    
T  14939633 cttttatcaatctattcatt-ctataatgagtttctacgagtatcttctacatgagtactcatatgcttgctttcttgct 14939711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 531 - 655
Target Start/End: Original strand, 18656206 - 18656330
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  ||| ||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||    
T  18656206 ctattgtactcattcatcatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgct 18656305  T
Q  631 tacatctatgatttttctccctatg 655  Q
    ||||||||||| |||||||||||||    
T  18656306 tacatctatgacttttctccctatg 18656330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 531 - 655
Target Start/End: Original strand, 7040459 - 7040583
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  | | ||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||    
T  7040459 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgct 7040558  T
Q  631 tacatctatgatttttctccctatg 655  Q
    ||||||||||| |||||||||||||    
T  7040559 tacatctatgacttttctccctatg 7040583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 531 - 655
Target Start/End: Complemental strand, 23564808 - 23564684
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  | | ||||||||||||||||||||||||||||||||| || | |||||||||| |||||||||||||||||||||||| |||||    
T  23564808 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctattttgct 23564709  T
Q  631 tacatctatgatttttctccctatg 655  Q
    ||||||||||| |||||||||||||    
T  23564708 tacatctatgacttttctccctatg 23564684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 551 - 630
Target Start/End: Complemental strand, 56074759 - 56074680
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||| |||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  56074759 cttttatcattctattcatttctataacgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 56074680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 584 - 655
Target Start/End: Original strand, 52518911 - 52518982
Alignment:
Q  584 tctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  52518911 tctatgagtatctcccacatgagttctcttatgcttgctctcttgcttacatctatgatctttctccctatg 52518982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 584 - 655
Target Start/End: Original strand, 52520753 - 52520824
Alignment:
Q  584 tctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||    
T  52520753 tctatgagtatctcccacatgagtactcttatgcttgctctctttcttacatctatgatctttctccctatg 52520824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 551 - 630
Target Start/End: Complemental strand, 52545215 - 52545137
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||    
T  52545215 cttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgctcgctttcttgct 52545137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 590 - 650
Target Start/End: Complemental strand, 23566443 - 23566383
Alignment:
Q  590 agtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctcc 650  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  23566443 agtatctccctcatgggtactcttatgcttgctatcttgcttacatctatgacttttctcc 23566383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 531 - 622
Target Start/End: Original strand, 54296526 - 54296617
Alignment:
Q  531 ctattgtactcattattcaactttta-tcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgct 622  Q
    ||||||||||||||  | | |||||| |||||| |||||||| || ||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  54296526 ctattgtactcattcatgatcttttaatcaatcaattcattt-tataatgagtttctatgagtatctccctcatcagtactcttatgcttgct 54296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 515 - 618
Target Start/End: Complemental strand, 18395792 - 18395689
Alignment:
Q  515 ctataaatatcttactctattgtactcattattcaacttttatca-atctattcatttctacaatgagtttctattagtatctcccacatgagtactctt 613  Q
    |||||||||||| |||||||||||||||||    | ||||||||| ||||||||| |  ||| |||||| | ||| |||||||||||||||| |||||||    
T  18395792 ctataaatatctcactctattgtactcattcactatcttttatcatatctattcacta-tactatgagtctatatgagtatctcccacatgaatactctt 18395694  T
Q  614 atgct 618  Q
    |||||    
T  18395693 atgct 18395689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 618
Target Start/End: Original strand, 42665051 - 42665118
Alignment:
Q  551 cttttatcaa-tctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgct 618  Q
    |||||||||| |||||||||| |||| ||||||||||||  |||||||||| || | ||||||||||||    
T  42665051 cttttatcaaatctattcatt-ctactatgagtttctatgggtatctcccagataaatactcttatgct 42665118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 531 - 655
Target Start/End: Original strand, 29758218 - 29758342
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  | | ||||||||||||||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||    
T  29758218 ctattgtactcattcattatcttttatcaatctattcatttctacaatgagttactttgagtatctccctcatgagtactcttatgcttgctatcttgct 29758317  T
Q  631 tacatctatgatttttctccctatg 655  Q
    ||||||||||| |||||||||||||    
T  29758318 tacatctatgacttttctccctatg 29758342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 511 - 630
Target Start/End: Complemental strand, 18612194 - 18612074
Alignment:
Q  511 actcctataaatatcttactctattgtactcatt-attcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtac 609  Q
    |||||||||||||  | ||||||||||||||| | |||  ||||||||||||||||||||||||| ||||||||| | | | ||||||||||||||||||    
T  18612194 actcctataaatacttcactctattgtactcaatcattatacttttatcaatctattcatttctataatgagtttttgtaaatatctcccacatgagtac 18612095  T
Q  610 tcttatgcttgctatcttgct 630  Q
    ||||||||||||| |||||||    
T  18612094 tcttatgcttgctttcttgct 18612074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 531 - 613
Target Start/End: Complemental strand, 8759197 - 8759115
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactctt 613  Q
    ||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||| | |||||||||| |||||||||||||    
T  8759197 ctattgtactcattcatcatcttttatcaatctgttcatttctacaatgagtttctttgagtatctccctcatgagtactctt 8759115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 622
Target Start/End: Complemental strand, 17148710 - 17148670
Alignment:
Q  582 tttctattagtatctcccacatgagtactcttatgcttgct 622  Q
    ||||||| ||||||||||||||||||||| ||||| |||||    
T  17148710 tttctatgagtatctcccacatgagtactgttatgtttgct 17148670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 551 - 655
Target Start/End: Original strand, 19064 - 19167
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctcc 650  Q
    |||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  19064 cttttatcaatctattcatt-ctataatgagtttctatgagcatctcccacatgagtactcctatgctttctatcttgcttacatctatgatttttctcc 19162  T
Q  651 ctatg 655  Q
    |||||    
T  19163 ctatg 19167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 531 - 655
Target Start/End: Original strand, 17449409 - 17449532
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  | | ||||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  17449409 ctattgtactcattcattatctttt-tcaatctattcatgtctacaatgagattctatgagtatctcccacatgagtactcttttgcttgctatcttgct 17449507  T
Q  631 tacatctatgatttttctccctatg 655  Q
    |||||||||||  ||||||||||||    
T  17449508 tacatctatgacctttctccctatg 17449532  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 584 - 655
Target Start/End: Complemental strand, 16808658 - 16808587
Alignment:
Q  584 tctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctatgatttttctccctatg 655  Q
    ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  16808658 tctatgagtatctccgacatgagtactcttatgcttgctctcttgcttacatctatgatctttctccctatg 16808587  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 551 - 622
Target Start/End: Complemental strand, 5924898 - 5924828
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgct 622  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||| | |||| ||||||||||||||||    
T  5924898 cttttatcaatctattcatt-ctataatgagtttctatgagtatctcctatatgaatactcttatgcttgct 5924828  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 559 - 639
Target Start/End: Original strand, 48941728 - 48941810
Alignment:
Q  559 aatctattcatttctaca--atgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgcttacatctat 639  Q
    |||||||||||||||| |  |||||||| ||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||||    
T  48941728 aatctattcatttctatataatgagtttatatgagtatctctcacatgaatactcttatacttgctctcttgcttacatctat 48941810  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 630
Target Start/End: Original strand, 9487459 - 9487535
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    |||||||||||||||||||| ||||||||| | |||   |||||||| ||||||| || ||||||||||||| |||||||    
T  9487459 cttttatcaatctattcatt-ctacaatgaatctctg--agtatctctcacatgaataatcttatgcttgctttcttgct 9487535  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 42332264 - 42332227
Alignment:
Q  191 tcatttaaggtcctgacctcttccaacaaatatttttt 228  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  42332264 tcatttaaggtgctgacatcttccaacaaatatttttt 42332227  T

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Target: scaffold0057 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 531 - 630
Target Start/End: Original strand, 58884 - 58982
Alignment:
Q  531 ctattgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttgct 630  Q
    ||||||||||||||  ||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  58884 ctattgtactcattcatcatcttttatcaatctattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgct 58982  T

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Target: scaffold0006 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 551 - 614
Target Start/End: Original strand, 39262 - 39325
Alignment:
Q  551 cttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactctta 614  Q
    |||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  39262 cttttatcaatctattcatttctataatgagtttttatgagtatctcccacatgagtactctta 39325  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 556 - 628
Target Start/End: Complemental strand, 20013030 - 20012959
Alignment:
Q  556 atcaatctattcatttctacaatgagtttctattagtatctcccacatgagtactcttatgcttgctatcttg 628  Q
    ||||||| ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  20013030 atcaatcaattcatt-ctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttg 20012959  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 606
Target Start/End: Complemental strand, 25076246 - 25076173
Alignment:
Q  533 attgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgag 606  Q
    ||||||||| ||  ||| ||||||||||| |||||||||||| ||||||||||||| | |||||| | ||||||    
T  25076246 attgtactctttcatcatcttttatcaatatattcatttctataatgagtttctatgaatatctctctcatgag 25076173  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 606
Target Start/End: Complemental strand, 25134215 - 25134142
Alignment:
Q  533 attgtactcattattcaacttttatcaatctattcatttctacaatgagtttctattagtatctcccacatgag 606  Q
    ||||||||| ||  ||| ||||||||||| |||||||||||| ||||||||||||| | |||||| | ||||||    
T  25134215 attgtactctttcatcatcttttatcaatatattcatttctataatgagtttctatgaatatctctctcatgag 25134142  T

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Target: scaffold0079 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 558
Target Start/End: Original strand, 15656 - 15722
Alignment:
Q  491 agttagttagggagttagttactcctataaatatcttactctattgtactcattattcaacttttatc 558  Q
    ||||||||||||||||| |||||| ||||| || ||||||||||||||||||| ||||| ||||||||    
T  15656 agttagttagggagttatttactc-tataagtaccttactctattgtactcatgattcatcttttatc 15722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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