View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_high_9 (Length: 655)
Name: NF11668_high_9
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 38 - 642
Target Start/End: Original strand, 13974795 - 13975399
Alignment:
| Q |
38 |
gttatgtataaatatatttcctgtattttaacctgtacagtcacgtacatgaaattatgcaggttgatgttccattatttactattgatgatgacattcc |
137 |
Q |
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| T |
13974795 |
gttaagtataaatatatttcctgtattttaacctgtacagtcacgtacatgaaattatgcaggttgatgttccattatttactattgatgatgacattcc |
13974894 |
T |
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| Q |
138 |
agcttctggtttggaaagccaaactagtactgatgcgcaacaacagcctttagaaaatcttagcctgataactgttgatgatattttgggttcagtaagt |
237 |
Q |
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| T |
13974895 |
agcttctggtttggaaagccaaactagtactgatgcgcaacaacagcctttagaaaatcttagcctgataactgttgatgatattttgggttcagtaagt |
13974994 |
T |
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| Q |
238 |
ttttctgttcattgatatgtacacaccgataacatattcgattttaattaagctatagagnnnnnnnnnnnnncattctcttaacactcatccatttctc |
337 |
Q |
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| T |
13974995 |
ttttctgttcattgaaatgtacacaacgataacatattcgattttaattaagctattgagaaaaatgaaaaaacattctcttaacactcatccatttctc |
13975094 |
T |
|
| Q |
338 |
tcttcaatttcctcgtcgaattatactattaattctaaaaaataatgagttgtaaaacgataattcatatgcaggttgtggagacaacacatcatgtagg |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13975095 |
tcttcaatttcctcgtcgaattatactattaattctaaaaaataatgagttgtaaaacgataattcatatgcaggttgtggagacaacacatcatgtagg |
13975194 |
T |
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| Q |
438 |
aaggatttctgtttcaacaccttctaacatgccatataaagaaatggctctccattgtgagaacctcctcgccggaaagcaacagaagatttccacattc |
537 |
Q |
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| T |
13975195 |
aaggatttctgtttcaacaccttctaacatgccatataaagaaatggctctccattgtgagaacctcctcgccggaaagcaacagaagatttccacattc |
13975294 |
T |
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| Q |
538 |
atgggtgcccaatcattacttgccaattcattcaggattcctcttcctgattacaaccaagaaaaggacgaatccacaaattccaatgttcagccaagtt |
637 |
Q |
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| T |
13975295 |
atgggtgcccaatcattacttgccaattcattcaggattcctcttcctgattacaaccaagaaaaggacgaatccacaaattccaatgttcagccaagtt |
13975394 |
T |
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| Q |
638 |
tgcct |
642 |
Q |
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| T |
13975395 |
tgcct |
13975399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 475 - 602
Target Start/End: Original strand, 13985461 - 13985588
Alignment:
| Q |
475 |
aaagaaatggctctccattgtgagaacctcctcgccggaaagcaacagaagatttccacattcatgggtgcccaatcattacttgccaattcattcagga |
574 |
Q |
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| T |
13985461 |
aaagaaatgactctccattgtgagaacctcctcaccggaaagcaacagaagatatccactttcatgggtgcccattcattacttaccaattcattcagga |
13985560 |
T |
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| Q |
575 |
ttcctcttcctgattacaaccaagaaaa |
602 |
Q |
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| T |
13985561 |
ttcctcttccagattacaaccaagaaaa |
13985588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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