View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_17 (Length: 524)
Name: NF11668_low_17
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 5444930 - 5445222
Alignment:
| Q |
18 |
aatccctcaacacttggccaattattctccgtgtatattttccatactccttcctcattccccaacttttctgaaaaatgttctcttaggcctataaaaa |
117 |
Q |
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| T |
5444930 |
aatccctcaacacttgcccaattattctccgtgtatattttccatactccttcctcattccccaacttttctgaaaaatgttctcttatgcctataaaaa |
5445029 |
T |
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| Q |
118 |
ctaccttttgatcaatcagatccatattctcagttcactaaccaaaacgccattcttcttttgttctctcctctcaaattaagtgcaatggcaacaagaa |
217 |
Q |
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| T |
5445030 |
ctaccttttgatcaatcagatccatattctcggttcactaaccaaaacaccattcttcttttgttctctcctctcaaattaagtgcaatggcaacaagaa |
5445129 |
T |
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| Q |
218 |
aaagcaaagccataggcattgaccttggtacaagctacagctgcattgcagtgtggcgaaacaatcgtgttgagatcattccaaacgaccaag |
310 |
Q |
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| T |
5445130 |
aaagcaaagccataggcattgaccttggtacaagctacagctgcattgcagtgtggcgaaacaatcgtgttgagatcattccaaacgaccaag |
5445222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 123 - 507
Target Start/End: Complemental strand, 5441182 - 5440796
Alignment:
| Q |
123 |
ttttgatcaatcagatccatattctcagttcactaaccaaaacgccattcttcttttgttctctcctctcaaattaag---tgcaatggcaacaagaaaa |
219 |
Q |
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| T |
5441182 |
tttttatcaatcacatccagattttcagtttactacccaaaacatcatt-ttcttttgttctctcctctcaaactctcgtttgtcgtggcaataacaaaa |
5441084 |
T |
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| Q |
220 |
agcaaagccataggcattgaccttggtacaagctacagctgcattgcagtgtggcgaaacaatcgtgttgagatcattccaaacgaccaagaaaatgtag |
319 |
Q |
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| T |
5441083 |
agaaaagccattggcatcgacattggcacaacctacagctgcatttgagagtggcaacacaatcatgttgagatcattccaaacgaccaagaaaatgtag |
5440984 |
T |
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| Q |
320 |
agagaaggtgagaaaaatgcacccgtgttcgaccttggtggtggaacttttgatgtttccttagtctatcattgacgaaggaatattcaaagttaaagca |
419 |
Q |
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| T |
5440983 |
agagaaggtgagaaaaatgcacccgtgttcgaccttggtggtggaacttttgatgtttccttagtccatcattgacgaaggaatattcaaagttaaagca |
5440884 |
T |
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| Q |
420 |
acattgagacatacgttaacgtttgggtgatgttgagtttgataacaatttggtgaaccttcttgttgaattattttatagaaagtac |
507 |
Q |
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| T |
5440883 |
acattgagacatacgttaatgtttgggtgatgttgagtttgataacaatttggtgaaccttcttgttgaattattttatagaaagtac |
5440796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 307 - 507
Target Start/End: Original strand, 5445683 - 5445878
Alignment:
| Q |
307 |
caagaaaatgtagagagaaggtgagaaaaatgcacccgtgttcgaccttggtggtggaacttttgatgtttccttagtctatcattgacgaaggaatatt |
406 |
Q |
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||||||||||| ||||||||||||||| |||| | ||||| || |||||||||||||| || |||||||||||||| | |||||| |||||||| || |
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| T |
5445683 |
caagaaaatgtggagagaaggtgagaagaatgtgcttgtgtttgatcttggtggtggaacattcgatgtttccttagtg-accattgatgaaggaatgtt |
5445781 |
T |
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| Q |
407 |
caaagttaaagcaacattgagacatacgttaacgtttgggtgatgttgagtttgataacaatttggtgaaccttcttgttgaattattttatagaaagta |
506 |
Q |
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| T |
5445782 |
ccaggttaaggccacattgggagatact----catttgggtggtattgatttcgataacaatttggtgaaccgtcttgttgaattatttcatagaaagta |
5445877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 507
Target Start/End: Complemental strand, 5433461 - 5433404
Alignment:
| Q |
450 |
tgttgagtttgataacaatttggtgaaccttcttgttgaattattttatagaaagtac |
507 |
Q |
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| T |
5433461 |
tgttgactttgataacaatttggtgaaccgtcttgttgaattgtttcatagaaagtac |
5433404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 10688218 - 10688291
Alignment:
| Q |
18 |
aatccctcaacacttggccaattattctccgtgtatattttccatactccttcctcattccccaacttttctgaaaaatgtt |
99 |
Q |
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| T |
10688218 |
aatcccacaacacttgcacaattattctccttgtatattttccatac--------aattccccaacttttctgaaaaatgtt |
10688291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 375
Target Start/End: Complemental strand, 8647073 - 8647045
Alignment:
| Q |
347 |
ttcgaccttggtggtggaacttttgatgt |
375 |
Q |
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| T |
8647073 |
ttcgaccttggtggtggaacttttgatgt |
8647045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 23587705 - 23587737
Alignment:
| Q |
347 |
ttcgaccttggtggtggaacttttgatgtttcc |
379 |
Q |
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| T |
23587705 |
ttcgatcttggtggtggaacttttgatgtttcc |
23587737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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