View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_18 (Length: 516)
Name: NF11668_low_18
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 34698852 - 34699337
Alignment:
| Q |
1 |
gagtgatttgttttggtcaaggattaacatttgtgtctcatgttctaactcatgtccgttggttccggtccaatgagttgtccaccaaaccttaaaccgg |
100 |
Q |
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| T |
34698852 |
gagtgatttgttttggtcaaggattaacatttgtgtctcatgttctaactcatgtccgttggttccggtccaatgagttgtccaccaaaccttaaaacgg |
34698951 |
T |
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| Q |
101 |
aatatactcatgaaccggattcctttgagtttgccaagtggaaccacgtggtggcttttgggttcggtggtgttgaaaccaacgaagcaaccatgttgca |
200 |
Q |
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| T |
34698952 |
aatatactcatgaaccggattcctttgagtttgccaagtggaaccacgtggtggcttttgggttcggtggtgttgaaaccaacgaagcaaccatgttgca |
34699051 |
T |
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| Q |
201 |
acgtggtattgtagttggtgtttttgttggatttggaattatggagaaaaggggaaggggtggtggttgttatgttgggtgggacttgagtgagaaaagg |
300 |
Q |
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| T |
34699052 |
acgtggtattgtagttg------------gatttggaattatggagaaaaggggaaggggtggtggttgttatgttgggtgggacttgagtgagaaaagg |
34699139 |
T |
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| Q |
301 |
gtgaccatttgcaagaaaacatgagtcgtttaaggtgatggataagggtgggttagttatatcgacgaggcctattacatctatgggtgtagcggttttg |
400 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
34699140 |
gtggccatttgcaagaaaacatgagtcatttaaggtgatggataagggtgggttagttatttcgacgaggcctattacatctatgggtgtagctgttttg |
34699239 |
T |
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| Q |
401 |
gttatgctcggtggtgccatggtgattgatgagaaacagagcttggttactactagctagtttaacttgatagctaacttggctctatggttgaaaat |
498 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34699240 |
gttatgctcggtggtgccatggtgattgatgagagactgagcttggttactactagctagtttaacttgatagctaacttggctctatggttgaaaat |
34699337 |
T |
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