View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_19 (Length: 483)
Name: NF11668_low_19
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 33 - 246
Target Start/End: Complemental strand, 12855590 - 12855381
Alignment:
| Q |
33 |
ttctacttaagcttagtttctgaaacttatagtgagattttaatgcaattctatgccttagttttaagattattttttaaacttatagtgagatatttag |
132 |
Q |
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| T |
12855590 |
ttcttcttaagcttagtttctgaagcttatagtgagattttaatgcaattctatgccttagttttaagtttattttttaaacttatagtgagata----g |
12855495 |
T |
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| Q |
133 |
taattgtatctaatattgtaggtttttgaaccatttactaagattttgaatttccaaaacataatatcaagaaaaaagagaatgctaattagtgtattta |
232 |
Q |
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| T |
12855494 |
taattgtatctaatattgtaggtttttgaaccatttactaagattttgaatttccaaaacataatatcaagaaaaaaaagaatgctaattagtgtattta |
12855395 |
T |
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| Q |
233 |
gaacattgattaag |
246 |
Q |
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| T |
12855394 |
gaacattgattaag |
12855381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 320 - 458
Target Start/End: Complemental strand, 12855308 - 12855171
Alignment:
| Q |
320 |
atgtaaaaaatttctttttggtttctttaactaatgatccgtaacactattagtatnnnnnnnncactggtgtgatatcannnnnnnnnaaagagtgata |
419 |
Q |
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| T |
12855308 |
atgtaaaaaatttctttttggtttctttaactaatgatccgtaacactattagtataaaaaaaa-actggtgtgatatcatttttttttaaagagtgata |
12855210 |
T |
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| Q |
420 |
tcctttttcttggtaattactaattgagaaatatgtgac |
458 |
Q |
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| T |
12855209 |
tcctttttcttggtaattactaattgagaaatatgtgac |
12855171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 2632641 - 2632677
Alignment:
| Q |
53 |
tgaaacttatagtgagattttaatgcaattctatgcct |
90 |
Q |
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| T |
2632641 |
tgaaacttatagtgag-ttttaatgcaattctatgcct |
2632677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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