View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_20 (Length: 481)
Name: NF11668_low_20
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 47117109 - 47117572
Alignment:
| Q |
1 |
tcttcgccggtgatgatgtcgccattgaaccgacatgctcgtgcaggttccacaggttctgccatgaacaacatcgggagaacacaaaacaatgccacaa |
100 |
Q |
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| T |
47117109 |
tcttcaccggtgatgatgtcgccattgaatcgacatgctcgtgcaggttccacaggttctgccatgaacaacatcgggagaacacaaaacaatgccacaa |
47117208 |
T |
|
| Q |
101 |
aagccgctgctcaacgactcgcacaagttatgtcgcatcaaacaattgatgaagaagaagacgatgacgatgttcctcttgactattctgcaattagtgg |
200 |
Q |
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| T |
47117209 |
aagccgctgctcaacgacttgcacaagttatgtcgcatcaaacaattgatgaagaagaagacgatgacgatgttcctcttgactattctgcaattagtgg |
47117308 |
T |
|
| Q |
201 |
cactagaagcatcggacttggtggtggaagagcagcgcggcctcgctcccctgtggtagctattattcctttcttacttgtatttatattgatatgttgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47117309 |
cactagaagcatcggacttggtggtggaagagcagcgcggcctcgctcccctgtggtagctattatttctttcttacttgtatttatattgatatgttgt |
47117408 |
T |
|
| Q |
301 |
tgaatgttcattcatccaattcgatgatgttgttgcattctattagacagttaagagtactcaagaacaacctccaccaatgagacctcgttcacctatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47117409 |
tgaatgttcattcatccaattcgatgatgttgttgcattctattagacagttaagagtactcaagaacaacctccaccaatgagacctcgttcacctatg |
47117508 |
T |
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| Q |
401 |
gtaagcttcatgcgagttgaatttactactaatcacattattttgaaaattagtatgaaatttt |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47117509 |
gtaagcttcatgcgagttgaatttactactaatcacattattttgaaaattagtatgaaatttt |
47117572 |
T |
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