View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_21 (Length: 466)
Name: NF11668_low_21
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 42313556 - 42313985
Alignment:
| Q |
18 |
cagagacaaggagagtctcatacttaatagagagatgtgcggagtattctccataccaataaaatccgggctatatttcacatccaaccataattctttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313556 |
cagagacaaggagagtctcatacttaatagagagatgtgcggagtattctccataccaataaaatccgggctatatttcacatccaaccataattctttc |
42313655 |
T |
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| Q |
118 |
taactgttccacaagcaggaagctaattggagcaagagctttctacaaaggttatgaggcatatgtaggcaaacttgatgcatcattttacactgcacgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313656 |
taactgttccacaagcaggaagctaattggagcaagagctttctacaaaggttatgaggcatatgtaggcaaacttgatgcatcattttacactgcacgt |
42313755 |
T |
|
| Q |
218 |
gacacaataggccatggttctcacactctatcaacagctggtggtaatttcgttcaaggagtaagtgtttatggaaatggtaatggcactgcaaaaggtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313756 |
gacacaataggccatggttctcacactctatcaacagctggtggtaatttcgttcaaggagtaagtgtttatggaaatggtaatggcactgcaaaaggtg |
42313855 |
T |
|
| Q |
318 |
gttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgcagatgtcttagctggttttgaagctgccataagtgacgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42313856 |
gttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgcagatgtcttagctggttttgaagctgccataagtgacgg |
42313955 |
T |
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| Q |
418 |
tgttgatgtgctctcagtttctcttggtat |
447 |
Q |
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| T |
42313956 |
tgttgatgtgctctcagtttctcttggtat |
42313985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 435
Target Start/End: Original strand, 23040693 - 23040754
Alignment:
| Q |
374 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
435 |
Q |
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||||||||| | || ||||||||||||||||| |||||||| ||||||||||| || ||||| |
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| T |
23040693 |
gatgcagatattttggctggttttgaagctgcaataagtgatggtgttgatgtactttcagt |
23040754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 435
Target Start/End: Original strand, 42734729 - 42734790
Alignment:
| Q |
374 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
435 |
Q |
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||||||||| | || |||||||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
42734729 |
gatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagt |
42734790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 42762750 - 42762710
Alignment:
| Q |
389 |
gctggttttgaagctgccataagtgacggtgttgatgtgct |
429 |
Q |
| |
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| T |
42762750 |
gctggttttgaagctgccataagtgatggtgttgatgtgct |
42762710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 42717156 - 42717095
Alignment:
| Q |
374 |
gatgcagatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
435 |
Q |
| |
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||||||||| | || |||||||||||||||||||||||||| ||||| || ||||| ||||| |
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| T |
42717156 |
gatgcagatattttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagt |
42717095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 435
Target Start/End: Complemental strand, 42743875 - 42743720
Alignment:
| Q |
280 |
aagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgca |
379 |
Q |
| |
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|||||| | ||| ||||| ||||| || |||| ||||| || |||||||| | ||||||||||| || || |||||| | | ||| || ||||||| |
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| T |
42743875 |
aagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgca |
42743776 |
T |
|
| Q |
380 |
gatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
435 |
Q |
| |
|
||| | || ||||||||||||||||| |||||||| ||||| || ||||| ||||| |
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|
| T |
42743775 |
gatattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagt |
42743720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 435
Target Start/End: Complemental strand, 42753234 - 42753079
Alignment:
| Q |
280 |
aagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgca |
379 |
Q |
| |
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|||||| | ||| ||||| ||||| || |||| ||||| || |||||||| | ||||||||||| || || |||||| | | ||| || ||||||| |
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| T |
42753234 |
aagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgca |
42753135 |
T |
|
| Q |
380 |
gatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
435 |
Q |
| |
|
||| | || ||||||||||||||||| |||||||| ||||| || ||||| ||||| |
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|
| T |
42753134 |
gatattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagt |
42753079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 31108871 - 31108828
Alignment:
| Q |
227 |
ggccatggttctcacactctatcaacagctggtggtaatttcgt |
270 |
Q |
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||||||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
31108871 |
ggccatggtactcacacactatcaacagctggtggaaatttcgt |
31108828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 24266787 - 24266846
Alignment:
| Q |
299 |
aatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttgg |
358 |
Q |
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||||| ||||| |||||||| || |||| | | ||||||||||||||||||||||||||| |
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| T |
24266787 |
aatggtactgctaaaggtggatcaccaagatcacatgttgcagcctacaaagtgtgttgg |
24266846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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