View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_23 (Length: 445)
Name: NF11668_low_23
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 43695760 - 43696171
Alignment:
| Q |
20 |
tcactgagtgaaggattatcagaatatgtttcctccatttgtcctacactacggaaatccgtaagttcttcaattgagggtgagaacaacactgcatcag |
119 |
Q |
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| T |
43695760 |
tcactgagtgaaggattatcagaatatgtttcctccatttgtcctacactactgaaatccataagttcttcaattgagggtgagaacaacactgcatcag |
43695859 |
T |
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| Q |
120 |
taattattgacaaatggttgctgatgctagatcaggctatataagnnnnnnnnnnnnnnncccagggagatttgccactgagtcttgaggcaagcaagct |
219 |
Q |
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| T |
43695860 |
taattattgacaaatggttgctgatgctagatcaggctatataagtttttttttctttttcccagggagatttgccactgagtcttgaggcaagcaagct |
43695959 |
T |
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| Q |
220 |
tgacctgagaaaaggagaaggggaaagaaatgggaaaaagtaggtaaatgaatcttaacctacaaattttaaaatgctttgcaaaggggtagttcaatag |
319 |
Q |
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| T |
43695960 |
tgacctgagaaaaggagaaggggaaagaaatgggaaaaagtaggtaaatgaatcttaacctacaaattttaaaatgcgttgcaaaggggtagttcaatag |
43696059 |
T |
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| Q |
320 |
taatgttttcacactattttttgaaaataaatccttaaagacatcgagaaccataaatatttcataccaacatgcatatttggctataggtttatggttt |
419 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43696060 |
tattgttttcacactattttttgaaaataaatccttaaagacatcgagaaccataaatatttcataccaacatgcatatttggctataggtttatggttt |
43696159 |
T |
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| Q |
420 |
cacacaaatcct |
431 |
Q |
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| T |
43696160 |
cacacaaatcct |
43696171 |
T |
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