View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11668_low_3 (Length: 760)

Name: NF11668_low_3
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11668_low_3
NF11668_low_3
[»] chr5 (10 HSPs)
chr5 (10-586)||(19850572-19851149)
chr5 (10-225)||(38981847-38982063)
chr5 (21-241)||(27342954-27343170)
chr5 (230-284)||(38982344-38982398)
chr5 (235-282)||(27343341-27343388)
chr5 (136-222)||(458673-458758)
chr5 (235-284)||(458931-458980)
chr5 (20-67)||(17244715-17244762)
chr5 (458-528)||(40380784-40380854)
chr5 (613-646)||(16566784-16566817)
[»] chr3 (6 HSPs)
chr3 (10-277)||(45279541-45279809)
chr3 (10-282)||(35850935-35851203)
chr3 (458-547)||(37407338-37407427)
chr3 (458-547)||(5259752-5259841)
chr3 (21-66)||(10687890-10687935)
chr3 (581-646)||(27421235-27421300)
[»] chr4 (7 HSPs)
chr4 (161-284)||(17871951-17872074)
chr4 (10-157)||(17872230-17872377)
chr4 (92-240)||(33610220-33610372)
chr4 (235-282)||(24368210-24368257)
chr4 (458-528)||(7123376-7123446)
chr4 (458-528)||(8394086-8394156)
chr4 (20-66)||(22335681-22335727)
[»] chr8 (2 HSPs)
chr8 (613-725)||(18199232-18199344)
chr8 (458-539)||(34255936-34256017)
[»] chr2 (1 HSPs)
chr2 (92-216)||(947303-947425)
[»] chr6 (5 HSPs)
chr6 (458-547)||(30444010-30444099)
chr6 (584-716)||(4567395-4567527)
chr6 (458-528)||(16553344-16553414)
chr6 (458-528)||(16629900-16629970)
chr6 (458-528)||(16651604-16651674)
[»] chr1 (3 HSPs)
chr1 (463-646)||(3805616-3805799)
chr1 (10-47)||(25267203-25267240)
chr1 (324-369)||(39570053-39570098)
[»] scaffold1920 (1 HSPs)
scaffold1920 (35-64)||(1016-1045)
[»] chr7 (1 HSPs)
chr7 (22-55)||(33323139-33323172)


Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 10 - 586
Target Start/End: Original strand, 19850572 - 19851149
Alignment:
Q  10 agatgaagggcgaaagtgttatctaaaattaaattaagagacgaatcatgtaattttttcataaactaaaaaccaaatattgtatatctcaattcccaag 109  Q
    ||||||||||  |||||||||||||||||||| |||||||| |||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19850572 agatgaagggtaaaagtgttatctaaaattaatttaagagatgaactatgtaatttttccataaactaaaaaccaaatattgtatatctcaattcccaag 19850671  T
Q  110 ttgcaaaccatattccaccagaaagcatggcaactgcaactaatgaaatagttt-ctttattacgagtatttacgagaattggatgcaaaattacatgga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||    
T  19850672 ttgcaaaccatattccaccagaaagcatggcaactgcaactaatgaaatagttttctttattatgagtatttacgagaattggatgcaaaattgcatgga 19850771  T
Q  209 agatgaatagttaaatatttgtttacttatatttatgtggccgacactacttaaaatttctgggtccgtcactgatcagaatggcttcatcccttttgaa 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||    
T  19850772 agatgaatagttaaatatttgtttacttatatttatgtggccgacactacttaaaatttctgggtccgtcattgatcggaatggcttcatccctcttgaa 19850871  T
Q  309 gaaattgcctctaactaccttataatttttaggcagctctacaagtttcaccataacttctttaactcaaagtgataattttcgtacttgtgaagatatt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19850872 gaaattgcctctaactaccttataatttttaggcagctctacaagtttcaccataacttctttaactcaaagtgataattttcgtacttgtgaagatatt 19850971  T
Q  409 tttgctcttaattagagcataacacacaaggtcctcatagtcctaaagaagtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatat 508  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19850972 tttgctctcaattagagcataacacacaaggtcctcatagtcctaaagaagtagagttgttgcttcacaaattgtctatgaaccaatgacttgatcatat 19851071  T
Q  509 acaacgactctaacgtagacaacattgatgtcgtggttgtcaccttcgtaaattctctcgtaactttagcttcaaggc 586  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  19851072 acaacgactctaacatagacaacattgatgccgtggttgtcaccttcgcaaattctctcgtaattttagcttcaaggc 19851149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 38981847 - 38982063
Alignment:
Q  10 agatgaagggcgaaagtgttatctaaaattaaattaagagacgaatcatgtaattttttcataaactaaaaaccaaatattgtatatctcaattcccaag 109  Q
    ||||||||| ||||||||||| ||||||||||||||||||| |||  ||||||||||   ||||||||||||||||||| |||||||||| ||||||||     
T  38981847 agatgaaggacgaaagtgttacctaaaattaaattaagagatgaactatgtaattttacaataaactaaaaaccaaatagtgtatatctcgattcccaaa 38981946  T
Q  110 ttgcaaaccatattccaccagaaagcatggcaactgcaactaatgaaatag-tttctttattacgagtatttacgagaattggatgcaaaattacatgga 208  Q
    |||||||||  ||||||||||||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  38981947 ttgcaaaccccattccaccagaaaacatgacaactgcaactaatgaattagttttctttattacgagtatttacgaaaattggatggaaaattacatgga 38982046  T
Q  209 agatgaatagttaaata 225  Q
    |||||||| ||||||||    
T  38982047 agatgaatggttaaata 38982063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 27342954 - 27343170
Alignment:
Q  21 gaaagtgttatctaaaattaaattaagagacgaatcatgtaattttttcataaactaaaaaccaaatattgtatatctcaattcccaagttgcaaaccat 120  Q
    ||||||| || || ||||||||||||  ||  ||| ||||||||||  |||||||||||||||||||||     |||||||||||||| |||||||||      
T  27342954 gaaagtggtacctgaaattaaattaaaggaaaaattatgtaattttaccataaactaaaaaccaaatat-----atctcaattcccaaattgcaaacctc 27343048  T
Q  121 attccaccagaaagcatggcaactgcaactaatgaaatagtttcttt-attacgagtatttacgagaattggatgcaaaattacatggaagatgaatagt 219  Q
    ||||||||  ||| ||||||||||||||||||||||||| ||| ||| |||| | ||||||||||||||||||||||||||| |||||||||||||| |     
T  27343049 attccaccgaaaaacatggcaactgcaactaatgaaataattttttttattatgtgtatttacgagaattggatgcaaaattgcatggaagatgaatcga 27343148  T
Q  220 taaatatttgtttacttatatt 241  Q
    ||||||||||||||||||||||    
T  27343149 taaatatttgtttacttatatt 27343170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 38982344 - 38982398
Alignment:
Q  230 tttacttatatttatgtggccgacactacttaaaatttctgggtccgtcactgat 284  Q
    |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  38982344 tttacttatatttacgtggcctacactacttaaaatttctgggcccgtcactgat 38982398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 27343341 - 27343388
Alignment:
Q  235 ttatatttatgtggccgacactacttaaaatttctgggtccgtcactg 282  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||    
T  27343341 ttatatttatgtggcctacactacttacaatttctgggtccgtcactg 27343388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 458673 - 458758
Alignment:
Q  136 atggcaactgcaactaatgaaatagtttctttattacgagtatttacgagaattggatgcaaaattacatggaagatgaatagttaa 222  Q
    ||||||||| ||||||||||||| |||  ||| ||| |||||||||| |||||||||||  ||||| |||||| |||||||| ||||    
T  458673 atggcaactacaactaatgaaatggtta-tttgttatgagtatttacaagaattggatgtgaaattgcatggatgatgaataattaa 458758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 458931 - 458980
Alignment:
Q  235 ttatatttatgtggccgacactacttaaaatttctgggtccgtcactgat 284  Q
    |||||||| ||||||| ||||||||||||||| || ||||||||||||||    
T  458931 ttatatttttgtggcctacactacttaaaattcctcggtccgtcactgat 458980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 17244715 - 17244762
Alignment:
Q  20 cgaaagtgttatctaaaattaaattaagagacgaatcatgtaattttt 67  Q
    ||||||||||| |||||||||||||||||||  ||| |||||||||||    
T  17244715 cgaaagtgttacctaaaattaaattaagagatcaattatgtaattttt 17244762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 40380854 - 40380784
Alignment:
Q  458 agtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagac 528  Q
    |||||||||||||||| |  |||||||||||| |||| ||||||  |||||||||||| || ||| |||||    
T  40380854 agtagagttgttgcttaaggaattgtctatgagccaacgacttggtcatatacaacgattccaacttagac 40380784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 646
Target Start/End: Complemental strand, 16566817 - 16566784
Alignment:
Q  613 tccatcatcttgatcttgtctgcttgtgacatgg 646  Q
    |||| |||||||||||||||||||||||||||||    
T  16566817 tccaccatcttgatcttgtctgcttgtgacatgg 16566784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 3e-90; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 45279541 - 45279809
Alignment:
Q  10 agatgaagggcgaaagtgttatctaaaattaaattaagagacgaatcatgtaattttttcataaactaaaaaccaaatattgtatatctcaattcccaag 109  Q
    ||||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||   ||||||||||||||||||| |||||||||||||||||||     
T  45279541 agatgaaggacgaaagtgttacctaaaattaaattaagagatgaaccatgtaattttacaataaactaaaaaccaaatagtgtatatctcaattcccaaa 45279640  T
Q  110 ttgcaaaccatattccaccagaaagcatggcaactgcaactaatgaaatag-tttctttattacgagtatttacgagaattggatgcaaaattacatgga 208  Q
    |||||  ||  ||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  45279641 ttgcatgcctcattccaccagaaaacatggcaactgcaactaatgaaatagttttctttattatgagtatttacgagaattggatgcaaaattatatgga 45279740  T
Q  209 agatgaatagttaaatatttgtttacttatatttatgtggccgacactacttaaaatttctgggtccgt 277  Q
    ||||| || |||||||| || ||||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  45279741 agatggatggttaaataattatttacttatatttatatggcctacactacttaaaattcctgggtccgt 45279809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 10 - 282
Target Start/End: Original strand, 35850935 - 35851203
Alignment:
Q  10 agatgaagggcgaaagtgttatctaaaattaaattaagagacgaatcatgtaattttttcataaactaaaaaccaaatattgtatatctcaattcccaag 109  Q
    ||||||||  ||||||||||| ||||||||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  35850935 agatgaagaacgaaagtgttacctaaaattaaattaaaagacgaattatgtaattttgccataaactaaaaaccaaatattgtatatctcaattcccaaa 35851034  T
Q  110 ttgcaaaccatattccaccagaaagcatggcaactgcaactaatgaaatag-tttctttattacgagtatttacgagaattggatgcaaaattacatgga 208  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||| |||||| |||||||||| |||||||| ||||||||| ||||||||||| ||||||    
T  35851035 ttgcaaaccctattccacgagaaaacatggcaactgcaactaattaaatagttttctttattgcgagtattaacgagaattcgatgcaaaattgcatgga 35851134  T
Q  209 agatgaatagttaaatatttgtttacttatatttatgtggccgacactacttaaaatttctgggtccgtcactg 282  Q
    | |||    ||||||||||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||||||    
T  35851135 atatg----gttaaatatttgtttacttatatttat-tggcctacactacttaaattttttgggtccgtcactg 35851203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 547
Target Start/End: Complemental strand, 37407427 - 37407338
Alignment:
Q  458 agtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagacaacattgatgtcgtggttg 547  Q
    |||||||||||||||| |  ||||| |||||| |||| ||||||  ||||||||||||||| ||| | ||| ||||||||| || |||||    
T  37407427 agtagagttgttgcttaaggaattgcctatgagccaaagacttggtcatatacaacgactccaactttgaccacattgatgccgcggttg 37407338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 547
Target Start/End: Original strand, 5259752 - 5259841
Alignment:
Q  458 agtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagacaacattgatgtcgtggttg 547  Q
    |||||||||||||||| |  ||||| |||||| |||| ||||||  ||||||||||||||| ||| | ||| |||| |||| || |||||    
T  5259752 agtagagttgttgcttaaggaattgcctatgagccaaagacttggtcatatacaacgactccaactttgaccacatagatgccgcggttg 5259841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 10687890 - 10687935
Alignment:
Q  21 gaaagtgttatctaaaattaaattaagagacgaatcatgtaatttt 66  Q
    |||||||||| |||||||||| |||||||||||||  |||||||||    
T  10687890 gaaagtgttacctaaaattaagttaagagacgaattgtgtaatttt 10687935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 646
Target Start/End: Complemental strand, 27421300 - 27421235
Alignment:
Q  581 caaggcataagacaatgacacttatggcattttccatcatcttgatcttgtctgcttgtgacatgg 646  Q
    ||||||| ||||||||||||||  |||| ||||||| ||| ||| |||| || |||||||||||||    
T  27421300 caaggcacaagacaatgacactcctggccttttccaccatattggtcttctccgcttgtgacatgg 27421235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 161 - 284
Target Start/End: Complemental strand, 17872074 - 17871951
Alignment:
Q  161 tttctttattacgagtatttacgagaattggatgcaaaattacatggaagatgaatagttaaatatttgtttacttatatttatgtggccgacactactt 260  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||| || ||||||||||||||||||||| |||||||||    
T  17872074 tttctttattacgggtatttacgagaattggatgcaaaattacatagaagataaatggttaaataattatttacttatatttatgtggcctacactactt 17871975  T
Q  261 aaaatttctgggtccgtcactgat 284  Q
    ||||||| |||||| |||||||||    
T  17871974 aaaatttatgggtctgtcactgat 17871951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 17872377 - 17872230
Alignment:
Q  10 agatgaagggcgaaagtgttatctaaaattaaattaagagacgaatcatgtaattttttcataaactaaaaaccaaatattgtatatctcaattcccaag 109  Q
    ||||||||| ||||||||||  | ||||||||||||||||| |||| ||||||||||   ||||||||||||||||||| |||||||||||||||||||     
T  17872377 agatgaaggacgaaagtgtttccaaaaattaaattaagagatgaattatgtaattttacaataaactaaaaaccaaatagtgtatatctcaattcccaaa 17872278  T
Q  110 ttgcaaaccatattccaccagaaagcatggcaactgcaactaatgaaa 157  Q
    |||||||||  |||| |||| ||| |||||||||||||||||||||||    
T  17872277 ttgcaaaccccattcaaccaaaaaacatggcaactgcaactaatgaaa 17872230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 33610220 - 33610372
Alignment:
Q  92 tatatctcaattcccaagttgcaaaccatattccaccagaaagcatggcaactgcaactaatgaaatag-tttctttattacgagtatttacgagaattg 190  Q
    |||||||  ||||||||||||||||||  |||||| | |||| |||| ||| ||||||||||||||||| ||||||  ||| ||||||||||   |||||    
T  33610220 tatatcttgattcccaagttgcaaaccccattccatcggaaaacatgacaattgcaactaatgaaatagttttcttagttatgagtatttacagaaattg 33610319  T
Q  191 gatgcaaaattacatggaagatgaatagttaaa----tatttgtttacttatat 240  Q
    ||||  ||||| ||| |||| ||||| || |||    |||||||||||||||||    
T  33610320 gatgtgaaattgcat-gaagctgaatggtcaaacaattatttgtttacttatat 33610372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 24368210 - 24368257
Alignment:
Q  235 ttatatttatgtggccgacactacttaaaatttctgggtccgtcactg 282  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  24368210 ttatatttttgtggcctacactacttaaaatttctgagtccgtcactg 24368257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 7123446 - 7123376
Alignment:
Q  458 agtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagac 528  Q
    |||||||||||||||| |  |||||||||||| |||| ||||||  |||||||||||| || ||| |||||    
T  7123446 agtagagttgttgcttaaggaattgtctatgagccaacgacttggtcatatacaacgattccaacttagac 7123376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 8394156 - 8394086
Alignment:
Q  458 agtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagac 528  Q
    |||||||||||||||| |  |||||||||||| |||| ||||||  |||||||||||| || ||| |||||    
T  8394156 agtagagttgttgcttgaggaattgtctatgagccaacgacttggtcatatacaacgattccaacttagac 8394086  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 22335681 - 22335727
Alignment:
Q  20 cgaaagtgttatctaaaattaaattaagagacgaatcatgtaatttt 66  Q
    ||||| ||||| ||||||||||||||| ||||||||| |||||||||    
T  22335681 cgaaattgttacctaaaattaaattaatagacgaatcgtgtaatttt 22335727  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 613 - 725
Target Start/End: Original strand, 18199232 - 18199344
Alignment:
Q  613 tccatcatcttgatcttgtctgcttgtgacatgggggccaacaatgcagactcttccttcagagcttccgcacacttttgttgaatcaagacatcttaca 712  Q
    |||| ||||| ||||||||||  |||| | |||| | || ||||  ||||||| ||||||| |||||| |||||||||||||||||||||||  ||| ||    
T  18199232 tccaccatctcgatcttgtctagttgtaatatggtgaccgacaacacagactcatccttcaaagcttctgcacacttttgttgaatcaagactgcttgca 18199331  T
Q  713 tctttaccttcca 725  Q
    | |||||||||||    
T  18199332 tatttaccttcca 18199344  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 539
Target Start/End: Original strand, 34255936 - 34256017
Alignment:
Q  458 agtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagacaacattgatgt 539  Q
    |||||||||||||||| |  ||||| |||||| |||| ||||||  ||||||||||||||| ||| | ||| |||| |||||    
T  34255936 agtagagttgttgcttaaggaattgcctatgagccaaagacttggtcatatacaacgactccaactttgaccacatcgatgt 34256017  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 216
Target Start/End: Original strand, 947303 - 947425
Alignment:
Q  92 tatatctcaattcccaagttgcaaaccatattccaccagaaagcatggcaactgcaactaatgaaatagtttctttattacgagtatttacgagaattgg 191  Q
    ||||||||||||| ||| |||||||||  |||| |  | ||| |||||||||| |||||||||||||||||  ||| ||| || ||||||| ||||||||    
T  947303 tatatctcaattctcaaattgcaaaccccattcgag-ataaaacatggcaactacaactaatgaaatagtta-tttgttatgaatatttacaagaattgg 947400  T
Q  192 atgcaaaattacatggaagatgaat 216  Q
    |||  ||||| ||||||||||||||    
T  947401 atgtgaaattgcatggaagatgaat 947425  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 458 - 547
Target Start/End: Complemental strand, 30444099 - 30444010
Alignment:
Q  458 agtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagacaacattgatgtcgtggttg 547  Q
    ||||||||||| |||| | ||||||||||||| |||| ||||||  ||||||||||||||| ||| | ||| |||| |||| ||||||||    
T  30444099 agtagagttgtggctttagaaattgtctatgagccaaagacttggtcatatacaacgactccaactttgaccacatcgatgccgtggttg 30444010  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 716
Target Start/End: Complemental strand, 4567527 - 4567395
Alignment:
Q  584 ggcataagacaatgacacttatggcattttccatcatcttgatcttgtctgcttgtgacatgggggccaacaatgcagactcttccttcagagcttccgc 683  Q
    |||| |||||||||||||| ||||| || |||| ||||| | |||||| ||||||| ||||||  ||    |  |||  ||| |||||||| ||||| ||    
T  4567527 ggcacaagacaatgacactcatggccttgtccaccatctcggtcttgtttgcttgtaacatggtagctgggagagcaacctcatccttcagtgcttctgc 4567428  T
Q  684 acacttttgttgaatcaagacatcttacatctt 716  Q
    | |||||||||||||||| ||||||| ||||||    
T  4567427 aaacttttgttgaatcaacacatctttcatctt 4567395  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 16553414 - 16553344
Alignment:
Q  458 agtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagac 528  Q
    |||||||||||||||| |  |||||||||||| |||| ||||||  |||||||||||| || ||| |||||    
T  16553414 agtagagttgttgcttaaggaattgtctatgagccaacgacttggtcatatacaacgattccaacttagac 16553344  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 16629970 - 16629900
Alignment:
Q  458 agtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagac 528  Q
    |||||||||||||||| |  |||||||||||| |||| ||||||  |||||||||||| || ||| |||||    
T  16629970 agtagagttgttgcttaaggaattgtctatgagccaacgacttggtcatatacaacgattccaacttagac 16629900  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 528
Target Start/End: Complemental strand, 16651674 - 16651604
Alignment:
Q  458 agtagagttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagac 528  Q
    |||||||||||||||| |  |||||||||||| |||| ||||||  |||||||||||| || ||| |||||    
T  16651674 agtagagttgttgcttaaggaattgtctatgagccaacgacttggtcatatacaacgattccaacttagac 16651604  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 646
Target Start/End: Original strand, 3805616 - 3805799
Alignment:
Q  463 agttgttgcttcacaaattgtctatgaaccaatgacttgagcatatacaacgactctaacgtagacaacattgatgtcgtggttgtcaccttcgtaaatt 562  Q
    ||||||||||| |  ||||| | |||| |||| || |||  |||| ||||| |||||||||| ||| |||| ||||||| |||||   ||||||  |  |    
T  3805616 agttgttgctttaggaattgccaatgagccaaagatttggtcataaacaacaactctaacgttgaccacatcgatgtcgcggttggttccttcgctatat 3805715  T
Q  563 ctctcgtaactttagcttcaaggcataagacaatgacacttatggcattttccatcatcttgatcttgtctgcttgtgacatgg 646  Q
    |||||  ||||||| |  | || || ||||||||||||||| ||||||| |||| ||||| | |||| || |||||||||||||    
T  3805716 ctctcaaaactttatccccgagacacaagacaatgacacttctggcattgtccaccatctcggtcttctccgcttgtgacatgg 3805799  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 25267240 - 25267203
Alignment:
Q  10 agatgaagggcgaaagtgttatctaaaattaaattaag 47  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  25267240 agataaaggacgaaagtgttatctaaaattaaattaag 25267203  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 39570053 - 39570098
Alignment:
Q  324 taccttataatttttaggcagctctacaagtttcaccataacttct 369  Q
    ||||||| | ||||||||||||| ||||||||||||||| ||||||    
T  39570053 taccttagactttttaggcagctttacaagtttcaccatgacttct 39570098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1920 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1920
Description:

Target: scaffold1920; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 1045 - 1016
Alignment:
Q  35 aaattaaattaagagacgaatcatgtaatt 64  Q
    ||||||||||||||||||||||||||||||    
T  1045 aaattaaattaagagacgaatcatgtaatt 1016  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 33323172 - 33323139
Alignment:
Q  22 aaagtgttatctaaaattaaattaagagacgaat 55  Q
    |||||||||| |||||||||||||||||||||||    
T  33323172 aaagtgttatttaaaattaaattaagagacgaat 33323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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