View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11668_low_30 (Length: 388)
Name: NF11668_low_30
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 6443327 - 6442963
Alignment:
| Q |
19 |
ttattttggaaattttagtttgtgaaggatttggttaatggagaggcagagagtttctcaggactataacaaggaggagaagacatattcaacgagagca |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6443327 |
ttattttagaaattttagtttgtgaaggatttggttaatggagaggcagagagtttctcaggactataacaaggaggagaagacatattcaacgagagca |
6443228 |
T |
|
| Q |
119 |
taaattattatgaattttgtattttgtaccataagaatacaaagcagtaaaataacaggaattatactaactataagtctacaaacactaaatattcttc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6443227 |
taaattattatgaattttgtattttgtaccataagaatacaaagcagtaaaataacaggaattatactaacta-aagtctacaaacactaaatattcttc |
6443129 |
T |
|
| Q |
219 |
catgctttagtcattagacaaaaggttacaaatataataacatatcctctaaagaatttggataatacattctatcactaacagatacatttcttagtaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6443128 |
catgctttagtcattagacaaaaggttacaaatataataacatatcctctaaagaatttggataatacattctatcactaacagatacatttcttagtaa |
6443029 |
T |
|
| Q |
319 |
ttcccact-----gatgctgactcagctagcagaggtgccttctagatctaagctggttttcttct |
379 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6443028 |
ttcccactgatgcgatgctgactcagctagcagaggtgccttctagatctaagctggttttcttct |
6442963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 254 - 379
Target Start/End: Complemental strand, 44098456 - 44098331
Alignment:
| Q |
254 |
aataacatatcctctaaagaatttggataatacattctatcactaacagatacatttcttagtaattcccactgatgctgactcagctagcagaggtgcc |
353 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||| || |
|
|
| T |
44098456 |
aataatatatcctctaaagaatttggataatacattctgtctctaacacatacatttcttagtaattcccattgatgatgactcggctagcagaggtacc |
44098357 |
T |
|
| Q |
354 |
ttctagatctaagctggttttcttct |
379 |
Q |
| |
|
||||||||||||| ||| |||||||| |
|
|
| T |
44098356 |
ttctagatctaagttggctttcttct |
44098331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 48611093 - 48611003
Alignment:
| Q |
260 |
atatcctctaaagaatttggataatacattctatcactaacagatacatttcttagtaattcccactgatgctgactcagctagcagaggt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || |||||| |||||||||||||||||| ||| |||| |||||||||||||| |||| |
|
|
| T |
48611093 |
atatcctctaaagaatttggataatacattatgtctctaacacatacatttcttagtaatttccatcgatgatgactcagctagcaaaggt |
48611003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University