View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_33 (Length: 380)
Name: NF11668_low_33
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 35680646 - 35680295
Alignment:
| Q |
17 |
accaaagaggtataggtacactcagagatggttggagcatgcaaacaggtcaccaaaagcagaaatcacagaatctaccttttgggctgaggtggaagaa |
116 |
Q |
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| T |
35680646 |
accaaagaggtataggtacactcagagatggttggagcatgcaaacaggtcaccaaaagcagaaatcacagaatctaccttttgggctgaggtggaagaa |
35680547 |
T |
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| Q |
117 |
ctttgcagctggactagtaataataaaccttttgaagatatcaaggaaagggttctcaaacttgagcaagatattaaaatgtggactgataaagaggtac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35680546 |
ctttgcagctggactagtaataataaaccttttgaagatatcaaggaaagggttctcaaacttgagcaagatattaaaatgtggactgataaagaggtac |
35680447 |
T |
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| Q |
217 |
taaccaaggatgtgttgtcaaaggatcctacctacataaagttatgggaaactctacctcaggaacataaagcaacatcctgcatctccactctctttac |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35680446 |
taaccaaggatgtgttgtcaaaggatcctaccttcataaagttatgggaaactctacctcaggaacataaagcaacatcctgcatctccactctctttac |
35680347 |
T |
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| Q |
317 |
tgttaaagaataaatcgattggctatctttaaaccctcacgagttggctctgtg |
370 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
35680346 |
tgttaaagaataaat--attggctatctttaaaccctcacgagttggctttgtg |
35680295 |
T |
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