View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_34 (Length: 372)
Name: NF11668_low_34
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 53007779 - 53008018
Alignment:
| Q |
19 |
aaatattggtgcgaagtccaaactataggctttcttaaaggctgtggtcttaaatttgggtgccatataaatcatctaagattctaaagcactatattag |
118 |
Q |
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| T |
53007779 |
aaatattggtgcgaagtacaaactataggctttcttaaaggcagtggtcttaaatttgggtgccatataaatcatctaagattctaaagcactatattag |
53007878 |
T |
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| Q |
119 |
gatgctgggccctatgatggttactcatcaggtaacaacgtgtagtggacaagtttcactcatccaccattcaggtgtagttttacaatattcgtcaaat |
218 |
Q |
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| T |
53007879 |
gatgctgggccctacgatggttactcatcaggtgacaacgtgtagtggacaaatttcactgatccaccattctggtgtagttttacgatattcggcaaat |
53007978 |
T |
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| Q |
219 |
aaatttgcgttaaatatatttttggtctctacaattatat |
258 |
Q |
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| T |
53007979 |
aaatttggattaaatatatttttgatctctataaatatat |
53008018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 53008085 - 53008122
Alignment:
| Q |
321 |
aagggatatatttagatgttcatgtgttttgtatgtcc |
358 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
53008085 |
aaggaatatatttagatgttcatgtgttttgtatgtcc |
53008122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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