View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11668_low_38 (Length: 360)
Name: NF11668_low_38
Description: NF11668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11668_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 13409000 - 13408662
Alignment:
| Q |
12 |
atgaatgaaaaataagttgaatcatctggcccgcagcaatctggtgttatagttataataatcgttagattttaagcgataaaatctaactgttcttaca |
111 |
Q |
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| T |
13409000 |
atgaatgaaaaataacttgaatcatctagcccgcagctgtctggtgttatagttataataaccgttagattttaagcgataaaatgtaaccgttcttaca |
13408901 |
T |
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| Q |
112 |
actgtggcaccatactgcagttgtagatgattcaaacaataatgttttgtgatcaagaaatgaatgaaaaaataagttaaatcatctacgactgtagtat |
211 |
Q |
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| T |
13408900 |
actgtggcaccatactgcagttgtagatgattcaaacaataatgttttgtgatcaagaaatgaatgaaaaaataagttaaatcatctacaactgcagtat |
13408801 |
T |
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| Q |
212 |
ggtgttgtagctgttataacggttagattttaagcgataaaatccaaccgtttgtataactatgacaac------atactgcaggcgtagacgatggag- |
304 |
Q |
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| T |
13408800 |
ggtgttgtagctgttataacggttagattttaagcgataaaattcaaccgtttgtataactatgacaccatactgatactgcaggcgtagacgatggagt |
13408701 |
T |
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| Q |
305 |
taagaaaaagtatgatatagaagtgcacctgatgataat |
343 |
Q |
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| T |
13408700 |
taagaaaaagtatgatatagaagtgcacctgatgataat |
13408662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 289
Target Start/End: Complemental strand, 13409027 - 13408881
Alignment:
| Q |
144 |
caaacaataatgttttgtgatcaagaaatgaatgaaaaaataagttaaatcatcta--cgactgtagtatggtgttgtagctgttataacggttagattt |
241 |
Q |
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| T |
13409027 |
caaataataatgttttgtgatcaagaaatgaatga-aaaataacttgaatcatctagcccgcagctgtctggtgttatagttataataaccgttagattt |
13408929 |
T |
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| Q |
242 |
taagcgataaaatccaaccgtttgtataactatgacaacatactgcag |
289 |
Q |
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| T |
13408928 |
taagcgataaaatgtaaccgttcttacaactgtggcaccatactgcag |
13408881 |
T |
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